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familyregion#reads#basepairsregion lengthunaligned fastabam alignmentconsensus fastaconsensus diagram
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"+r+""+i+""+last[0]+""+last[1]+""+last[2]+""+generateDownloadLink(r,i,"unaligned.fa.bzip2")+""+generateDownloadLink(r,i,"alignment.bam")+""+generateDownloadLink(r,i,"consensus.fa")+""+generateShowLink(r,i)+" "+generateDownloadLink(r,i,"consensus.png")+"
"+r+""+i+""+last[0]+""+last[1]+""+last[2]+""+generateDownloadLink(r,i,"unaligned.fa.bzip2")+""+generateDownloadLink(r,i,"alignment.bam")+""+generateDownloadLink(r,i,"consensus.fa")+""+generateShowLink(r,i)+" "+generateDownloadLink(r,i,"consensus.png")+"