# HG changeset patch
# User mzeidler
# Date 1380113262 14400
# Node ID 4db3249f8544ecb6bb543c9a5ccf1dc94e496d8b
# Parent  d50aaf4471c1092c35c599515f4486f679fc5ff0
Uploaded

diff -r d50aaf4471c1 -r 4db3249f8544 vhom_region.xml
--- a/vhom_region.xml	Wed Sep 25 08:47:00 2013 -0400
+++ b/vhom_region.xml	Wed Sep 25 08:47:42 2013 -0400
@@ -5,6 +5,7 @@
 	<requirements>
         <requirement type="package" version="1.02.00">lastz</requirement>
         <requirement type="package" version="1.0">virana_python</requirement>
+        <requirement type="package" version="2.8">jalview</requirement>
     </requirements>
 
     <command interpreter="python">vhom_regionplot.py --html_file $hom_output --directory ${hom_output.files_path} --stats $stat_output
@@ -43,6 +44,7 @@
     
     --output_dir ${hom_output.files_path}
     
+    --jalview_jar_dir $JALVIEW_DIR
     
     --region_stats $stat_output
     </command>