# HG changeset patch
# User mzeidler
# Date 1380033715 14400
# Node ID 3eddea30be1ae0e8f29438a4c938a8e104c8765a
# Parent  3ba5983012cf5b05c58f6815cececb8d3fc21742
Uploaded fixed vref for ftputil version > 2.3

diff -r 3ba5983012cf -r 3eddea30be1a vref.py
--- a/vref.py	Tue Sep 24 10:19:40 2013 -0400
+++ b/vref.py	Tue Sep 24 10:41:55 2013 -0400
@@ -327,15 +327,15 @@
 
         if self.host.path.isfile(entry_path):
             logging.debug('Processing refseq entry %s' % entry_path)
-            remote_handle = self.host.file(entry_path)
+            with self.host.file(entry_path) as remote_handle:
             
 
-            for record, project, taxonomy, family, organism, gi\
-                in self._parse_genbank_records(remote_handle):
-
-                cleaned = self._get_fasta_record(record, self.group , family, organism, gi)
-
-                yield cleaned
+                for record, project, taxonomy, family, organism, gi\
+                    in self._parse_genbank_records(remote_handle):
+    
+                    cleaned = self._get_fasta_record(record, self.group , family, organism, gi)
+    
+                    yield cleaned
 
     def _get_nz(self, entry_path):