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1 from argparse import ArgumentParser
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2 import os
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3 from vhom import RegionRunner
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4
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5
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6 def printDir(directory):
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7 rval=["<ul>"]
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8 flist = os.listdir(directory)
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9
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10 for entry in flist:
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11 if(os.path.isdir(os.path.join(directory,entry))):
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12 rval.append('<li>%s</li>'%entry)
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13 rval.extend(printDir(os.path.join(directory,entry)))
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14 else:
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15 rval.append( '<li><a href="%s">%s</a></li>' % ( os.path.join(directory,entry), entry) )
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16 rval.append("</ul>")
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17 return rval
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18
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19
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20
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21 if __name__ == "__main__":
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22
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23
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24 parser = ArgumentParser()
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25
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26 a = parser.add_argument
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27 a("-o","--html_file",dest="html_file")
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28 a("-d","--directory",dest="directory")
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29
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30 (options,args)= parser.parse_known_args()
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31
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32 args.insert(0,"dummy")
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33 try:
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34 RegionRunner.run(argv=args)
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35 except SystemExit:
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36 f = open(options.html_file,'w')
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37 rval = ["<html><head><title>Homologous groups and regions derived from hit files </title></head><body><p/>\n"]
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38 rval.append('<div>This composite dataset is composed of the following files:<p/>')
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39 directory= options.directory
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40 rval.extend(printDir(directory))
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41
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42 rval.append( '</body></html>' )
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43
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44 f.write("\n".join( rval ))
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45 f.close()
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