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1 <tool id="vref_blast" name="Virana Blast References">
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2
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3 <description>Obtains blast databases. </description>
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4
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5 <requirements>
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6 <requirement type="package" version="1.0">virana_python</requirement>
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12
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7
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8
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9 </requirements>
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10
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11 <command interpreter="python">vref.py blast --output_path $output
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12
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13 #if $database
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14 #set $groups = str($database).split(",")
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15 #for $ref in $groups:
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16 --reference_database $ref
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17 #end for
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18 #end if
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19
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20
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21 </command>
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22
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23
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24 <inputs>
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25 <param name="database" type="select" label="choose BLAST databases" multiple="true" display="checkboxes">
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26 <option value="nr">nr</option>
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27 <option value="nt">nt</option>
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28 </param>
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29
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30
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31 </inputs>
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32
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33
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34 <outputs>
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35 <data format="blastdb" name="output" label="blast_ref.blastdb"/>
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36 </outputs>
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37
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38 </tool> |
