Mercurial > repos > mzeidler > virana

view fasta_to_bwa_index_converter.xml @ 42:1a7b195cd352 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author mzeidler
date Mon, 23 Sep 2013 12:20:46 -0400
parents b1627b8843ae
children
line wrap: on
line source

<tool id="vmap_dnaindex" name="VMap DNAIndex" version="1.0.0">

    <requirements>
        <requirement type="package" version="0.7.4">bwa</requirement>
        <requirement type="package" version="0.1.19">samtools</requirement>
        <requirement type="package" version="1.0">virana_python</requirement>
        <requirement type="package" version="1.7.1">numpy</requirement>
        <requirement type="package" version="1.61">biopython</requirement>
        <requirement type="package" version="0.5.4">htseq</requirement>
    </requirements>
    <command interpreter="python">vmap_dnaindex.py --html_file $output --index_dir ${output.files_path} --dir ${output.files_path}  --reference_file $input 2&gt;&amp;1 </command>
    
    <inputs>
        <param name="input" format="fasta" type="data" label="Fasta file"/>
    </inputs>
    
    <outputs>
        <data name="output" format="bwa_index"/>
    </outputs>

</tool>