Mercurial > repos > mvdbeek > test_sra

comparison tool_dependencies.xml @ 8:ba27f87d7c36 draft

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planemo upload commit 96ecd86165525684766848f98a1c3be4353ec3b1-dirty
author mvdbeek
date Fri, 14 Aug 2015 13:20:15 -0400
parents 5aca2a1c5f2e
children 9c04607bbb08
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7:5aca2a1c5f2e 8:ba27f87d7c36
4 <install version="1.0"> 4 <install version="1.0">
5 <actions> 5 <actions>
6 <action type="make_directory">src</action> 6 <action type="make_directory">src</action>
7 <action type="make_directory">build</action> 7 <action type="make_directory">build</action>
8 <action type="change_directory">src</action> 8 <action type="change_directory">src</action>
9 <action type="download_by_url">https://github.com/ncbi/ncbi-vdb/archive/2.5.2.tar.gz</action>
10 <action type="shell_command">
11 LD_LIBRARY_PATH=LD_LIBRARY_PATH:$INSTALL_DIR/lib64:$INSTALL_DIR/lib
12 ./configure --prefix=$INSTALL_DIR --build-prefix=$INSTALL_DIR/build
13 make
14 make install
15 </action>
9 <action type="download_by_url">https://github.com/ncbi/sra-tools/archive/2.5.2.tar.gz</action> 16 <action type="download_by_url">https://github.com/ncbi/sra-tools/archive/2.5.2.tar.gz</action>
10 <action type="download_by_url">https://github.com/ncbi/ngs/archive/1.1.3.tar.gz</action> 17 <action type="download_by_url">https://github.com/ncbi/ngs/archive/1.1.3.tar.gz</action>
11 <action type="download_by_url">https://github.com/ncbi/ncbi-vdb/archive/2.5.2.tar.gz</action>
12 <action type="change_directory">../src</action> 18 <action type="change_directory">../src</action>
13 <action type="shell_command"> 19 <action type="shell_command">
14 ls 20 ls
15 mv sra-tools-2.5.2 sra-tools 21 mv sra-tools-2.5.2 sra-tools
16 mv ngs-1.1.3 ngs 22 mv ngs-1.1.3 ngs