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comparison meme.xml @ 2:6b2d1988a579 draft default tip

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planemo upload for repository http://meme-suite.org/tools/meme
author mvdbeek
date Thu, 28 May 2015 11:58:21 -0400
parents d358e2bd1598
children
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1:d358e2bd1598 2:6b2d1988a579
1 <tool id="meme_meme" name="MEME" version="1.0.2"> 1 <tool id="meme_meme" name="MEME" version="1.0.3">
2 <requirements> 2 <requirements>
3 <requirement type="package" version="4.10.0_4">meme</requirement> 3 <requirement type="package" version="4.10.0_4">meme</requirement>
4 </requirements> 4 </requirements>
5 <description>motif discovery</description> 5 <description>motif discovery</description>
6 <command>meme "$input1" -o "${html_outfile.files_path}" 6 <command>meme "$input1" -o "${html_outfile.files_path}"
7 -nostatus 7 -nostatus
8 8
9 -p \${GALAXY_SLOTS:-4} ##number of processors 9 ##-p \${GALAXY_SLOTS:-4} ##number of processors, but requires MPI.
10 10
11 #if str( $options_type.options_type_selector ) == 'advanced': 11 #if str( $options_type.options_type_selector ) == 'advanced':
12 -sf "${ str( $options_type.sf ).replace( ' ', '_' ) }" 12 -sf "${ str( $options_type.sf ).replace( ' ', '_' ) }"
13 -${options_type.alphabet_type.alphabet_type_selector} 13 -${options_type.alphabet_type.alphabet_type_selector}
14 -mod "${options_type.mod_type.mod_type_selector}" 14 -mod "${options_type.mod_type.mod_type_selector}"