Mercurial > repos > mvdbeek > incucyte_stack_and_upload_omero_debug

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planemo upload for repository https://github.com/lldelisle/tools-lldelisle/tree/master/tools/incucyte_stack_and_upload_omero commit 4ac9b1d66ba6857357867c8eccb6c9d1ad603364-dirty
author mvdbeek
date Tue, 06 Aug 2024 16:04:29 +0000
parents a599551e800d
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a599551e800d planemo upload for repository https://github.com/lldelisle/tools-lldelisle/tree/master/tools/incucyte_stack_and_upload_omero commit 4ac9b1d66ba6857357867c8eccb6c9d1ad603364-dirty
mvdbeek
parents:
diff changeset
1 I don't know why but I need to run the macro once on GUI before being able to run it in CLI...
a599551e800d planemo upload for repository https://github.com/lldelisle/tools-lldelisle/tree/master/tools/incucyte_stack_and_upload_omero commit 4ac9b1d66ba6857357867c8eccb6c9d1ad603364-dirty
mvdbeek
parents:
diff changeset
2 ```bash
a599551e800d planemo upload for repository https://github.com/lldelisle/tools-lldelisle/tree/master/tools/incucyte_stack_and_upload_omero commit 4ac9b1d66ba6857357867c8eccb6c9d1ad603364-dirty
mvdbeek
parents:
diff changeset
3 ssh -Y updubsrv1
a599551e800d planemo upload for repository https://github.com/lldelisle/tools-lldelisle/tree/master/tools/incucyte_stack_and_upload_omero commit 4ac9b1d66ba6857357867c8eccb6c9d1ad603364-dirty
mvdbeek
parents:
diff changeset
4 . '/data/galaxy/galaxy/var/dependencies/_conda/bin/activate' /data/galaxy/galaxy/var/dependencies/_conda/envs/mulled-v1-db2fcfa8be636326417c50715ab9fec065adbfde66cca33b4958bee1dd8ad945/
a599551e800d planemo upload for repository https://github.com/lldelisle/tools-lldelisle/tree/master/tools/incucyte_stack_and_upload_omero commit 4ac9b1d66ba6857357867c8eccb6c9d1ad603364-dirty
mvdbeek
parents:
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5 sudo chmod -R 777 /data/galaxy/galaxy/var/dependencies/_conda/envs/mulled-v1-db2fcfa8be636326417c50715ab9fec065adbfde66cca33b4958bee1dd8ad945/bin/../uprefs/
a599551e800d planemo upload for repository https://github.com/lldelisle/tools-lldelisle/tree/master/tools/incucyte_stack_and_upload_omero commit 4ac9b1d66ba6857357867c8eccb6c9d1ad603364-dirty
mvdbeek
parents:
diff changeset
6 ImageJ
a599551e800d planemo upload for repository https://github.com/lldelisle/tools-lldelisle/tree/master/tools/incucyte_stack_and_upload_omero commit 4ac9b1d66ba6857357867c8eccb6c9d1ad603364-dirty
mvdbeek
parents:
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7 # I need to check what changed in uprefs
a599551e800d planemo upload for repository https://github.com/lldelisle/tools-lldelisle/tree/master/tools/incucyte_stack_and_upload_omero commit 4ac9b1d66ba6857357867c8eccb6c9d1ad603364-dirty
mvdbeek
parents:
diff changeset
8
a599551e800d planemo upload for repository https://github.com/lldelisle/tools-lldelisle/tree/master/tools/incucyte_stack_and_upload_omero commit 4ac9b1d66ba6857357867c8eccb6c9d1ad603364-dirty
mvdbeek
parents:
diff changeset
9 ```