diff Dockerfile @ 4:de4889098f45 default tip

Allow whitespace in gene name and fix missing creation of output section.

--- a/Dockerfile	Wed Dec 03 01:47:58 2014 +0100
+++ b/Dockerfile	Wed Jan 14 17:19:16 2015 +0100
@@ -27,11 +27,679 @@
 
 RUN Rscript -e 'source("http://bioconductor.org/biocLite.R"); biocLite(c("DESeq", "DESeq2", "edgeR", "EDASeq"))'
 RUN Rscript -e 'install.packages(c("latticeExtra", "ggplot2", "reshape", "gridExtra"), dependencies=TRUE, repos="http://cran.us.r-project.org")'
+RUN apt-get install bc
+RUN easy_install intermine
 
 #add galaxy user (could be any username).
 #1001 will be replaced by the actual user id of the system user
 #executing the galaxy tool, so that file write operations are possible.
-RUN adduser galaxy -u 1001
+RUN adduser galaxy -u 1002
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+RUN usermod -aG staff galaxy
+
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+
 
 #VOLUME ["/home/galaxy/"]
 RUN mkdir /home/galaxy/job_working_directory