Mercurial > repos > mvdbeek > docker_scriptrunner
changeset 6:b28d3445992b draft
planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit 87a8f2ec706b231b2db20a9433efa34d967d35cf
| author | mvdbeek |
|---|---|
| date | Fri, 08 Jul 2016 17:31:44 -0400 |
| parents | db65a7426ac7 |
| children | 17e93298c225 |
| files | dockerfiles/scriptrunner/Dockerfile scriptrunner.py |
| diffstat | 2 files changed, 7 insertions(+), 6 deletions(-) [+] |
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--- a/dockerfiles/scriptrunner/Dockerfile Fri Jul 08 17:19:38 2016 -0400 +++ b/dockerfiles/scriptrunner/Dockerfile Fri Jul 08 17:31:44 2016 -0400 @@ -16,12 +16,13 @@ libcurl4-openssl-dev libssl-dev libreadline-dev libxml2-dev liblzma-dev \ libpcre3-dev libbz2-dev libx11-dev -RUN useradd galaxy --create-home --uid 1450 && \ - chown -R galaxy:galaxy /home/galaxy/ +RUN mkdir /var/home && \ + useradd galaxy --create-home --home-dir /var/home/galaxy --uid 1450 && \ + chown -R galaxy:galaxy /var/home/galaxy/ USER galaxy -WORKDIR /home/galaxy -ENV CONDA_PREFIX="/home/galaxy/conda" \ - PATH="/home/galaxy/conda/envs/default/bin:/home/galaxy/conda/bin:$PATH" +WORKDIR /var/home/galaxy +ENV CONDA_PREFIX="/var/home/galaxy/conda" \ + PATH="/var/home/galaxy/conda/envs/default/bin:/var/home/galaxy/conda/bin:$PATH" RUN curl https://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -L -o miniconda.sh RUN bash miniconda.sh -b -p "$CONDA_PREFIX" && rm miniconda.sh
--- a/scriptrunner.py Fri Jul 08 17:19:38 2016 -0400 +++ b/scriptrunner.py Fri Jul 08 17:31:44 2016 -0400 @@ -395,7 +395,7 @@ def update_permissions(): - cmd = ["/bin/chown", "-R", "galaxy:galaxy", "/home/galaxy"] + cmd = ["/bin/chown", "-R", "galaxy:galaxy", "/var/home/galaxy"] subprocess.call(cmd) def main():