Mercurial > repos > mvdbeek > docker_scriptrunner

comparison dockerfiles/scriptrunner/Dockerfile @ 13:cf6e2bba9714 draft

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planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit 30f8264cdd67d40dec8acde6407f32152e6a29c1
author mvdbeek
date Sat, 09 Jul 2016 11:53:51 -0400
parents 77dca93454b7
children 5a3652633289
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12:81f85bafcc7c 13:cf6e2bba9714
10 # make sure the package repository is up to date 10 # make sure the package repository is up to date
11 ENV DEBIAN_FRONTEND noninteractive 11 ENV DEBIAN_FRONTEND noninteractive
12 RUN apt-get -qq update 12 RUN apt-get -qq update
13 13
14 # Install all requirements that are recommend by the Galaxy project 14 # Install all requirements that are recommend by the Galaxy project
15 RUN apt-get install -y --no-install-recommends imagemagick libfreetype6-dev wget curl \ 15 RUN apt-get install -y --no-install-recommends bc imagemagick libfreetype6-dev wget curl \
16 libcurl4-openssl-dev libssl-dev libreadline-dev libxml2-dev liblzma-dev \ 16 libcurl4-openssl-dev libssl-dev libreadline-dev libxml2-dev liblzma-dev \
17 libpcre3-dev libbz2-dev libx11-dev 17 libpcre3-dev libbz2-dev libx11-dev
18 18
19 RUN mkdir /var/home && \ 19 RUN mkdir /var/home && \
20 useradd galaxy --create-home --home-dir /home/galaxy --uid 1450 && \ 20 useradd galaxy --create-home --home-dir /home/galaxy --uid 1450 && \
29 RUN bash -c "conda create -y -q -c bioconda --name default samtools==0.1.19 bcftools && \ 29 RUN bash -c "conda create -y -q -c bioconda --name default samtools==0.1.19 bcftools && \
30 conda config --add channels r && \ 30 conda config --add channels r && \
31 conda config --add channels bioconda && \ 31 conda config --add channels bioconda && \
32 conda config --add channels iuc && \ 32 conda config --add channels iuc && \
33 . activate default && \ 33 . activate default && \
34 conda install ghostscript" 34 conda install ghostscript coreutils"
35 USER root 35 USER root
36 RUN chown -R galaxy:users /home/galaxy && \ 36 RUN chown -R galaxy:users /home/galaxy && \
37 chmod g=rwx /home/galaxy && \ 37 chmod g=rwx /home/galaxy && \
38 usermod -G users galaxy 38 usermod -G users galaxy