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annotate dockerfiles/r-bioperl-python/Dockerfile @ 13:cf6e2bba9714 draft

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planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit 30f8264cdd67d40dec8acde6407f32152e6a29c1
author mvdbeek
date Sat, 09 Jul 2016 11:53:51 -0400
parents ed7cf3f35799
children 5a3652633289
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b6211faea403 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit ae672027942a606c1a5e302348279a5493151c11-dirty
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1 # Script runner base image
b6211faea403 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit ae672027942a606c1a5e302348279a5493151c11-dirty
mvdbeek
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2 #
b6211faea403 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit ae672027942a606c1a5e302348279a5493151c11-dirty
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3 # VERSION 0.3
b6211faea403 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit ae672027942a606c1a5e302348279a5493151c11-dirty
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4 # This Dockerfile is the base system for executing scripts with the docker scriptrunner.
b6211faea403 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit ae672027942a606c1a5e302348279a5493151c11-dirty
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cf6e2bba9714 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit 30f8264cdd67d40dec8acde6407f32152e6a29c1
mvdbeek
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6 FROM artbio/scriptrunner
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b6211faea403 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit ae672027942a606c1a5e302348279a5493151c11-dirty
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b6211faea403 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit ae672027942a606c1a5e302348279a5493151c11-dirty
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8 MAINTAINER Marius van den Beek, m.vandenbeek@gmail.com
b6211faea403 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit ae672027942a606c1a5e302348279a5493151c11-dirty
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e1f5be390bc3 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit a0b1360bc3e6b97f793caa1e6d60d8864308ee83
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10 USER root
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ed7cf3f35799 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit d8d8e8e063698813c9eb646e0df7d93118fd0520
mvdbeek
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11 RUN su - galaxy -c 'bash -c ". /home/galaxy/conda/bin/activate default && \
ed7cf3f35799 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit d8d8e8e063698813c9eb646e0df7d93118fd0520
mvdbeek
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12 conda install -y ncurses biopython perl-bioperl bedtools bioconductor-deseq2 bioconductor-edger numpy scipy"' && \
ed7cf3f35799 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit d8d8e8e063698813c9eb646e0df7d93118fd0520
mvdbeek
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13 chown -R galaxy:users /home/galaxy && chmod g=rwx /home/galaxy