Mercurial > repos > mvdbeek > docker_scriptrunner

annotate dockerfiles/r-bioperl-python/Dockerfile @ 9:77dca93454b7 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit 40d6cb5308a36b00495fd6072d867ed2c5a37b3c
author mvdbeek
date Sat, 09 Jul 2016 05:07:15 -0400
parents e1f5be390bc3
children ed7cf3f35799
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
b6211faea403 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit ae672027942a606c1a5e302348279a5493151c11-dirty
mvdbeek
parents:
diff changeset
1 # Script runner base image
b6211faea403 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit ae672027942a606c1a5e302348279a5493151c11-dirty
mvdbeek
parents:
diff changeset
2 #
b6211faea403 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit ae672027942a606c1a5e302348279a5493151c11-dirty
mvdbeek
parents:
diff changeset
3 # VERSION 0.3
b6211faea403 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit ae672027942a606c1a5e302348279a5493151c11-dirty
mvdbeek
parents:
diff changeset
4 # This Dockerfile is the base system for executing scripts with the docker scriptrunner.
b6211faea403 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit ae672027942a606c1a5e302348279a5493151c11-dirty
mvdbeek
parents:
diff changeset
5
b6211faea403 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit ae672027942a606c1a5e302348279a5493151c11-dirty
mvdbeek
parents:
diff changeset
6 FROM mvdbeek/scriptrunner
b6211faea403 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit ae672027942a606c1a5e302348279a5493151c11-dirty
mvdbeek
parents:
diff changeset
7
b6211faea403 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit ae672027942a606c1a5e302348279a5493151c11-dirty
mvdbeek
parents:
diff changeset
8 MAINTAINER Marius van den Beek, m.vandenbeek@gmail.com
b6211faea403 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit ae672027942a606c1a5e302348279a5493151c11-dirty
mvdbeek
parents:
diff changeset
9
3
e1f5be390bc3 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit a0b1360bc3e6b97f793caa1e6d60d8864308ee83
mvdbeek
parents: 0
diff changeset
10 USER galaxy
0
b6211faea403 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit ae672027942a606c1a5e302348279a5493151c11-dirty
mvdbeek
parents:
diff changeset
11 RUN bash -c ". activate default && \
b6211faea403 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit ae672027942a606c1a5e302348279a5493151c11-dirty
mvdbeek
parents:
diff changeset
12 conda install -y ncurses biopython perl-bioperl bedtools bioconductor-deseq2 bioconductor-edger numpy scipy"
3
e1f5be390bc3 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit a0b1360bc3e6b97f793caa1e6d60d8864308ee83
mvdbeek
parents: 0
diff changeset
13 USER root
9
77dca93454b7 planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit 40d6cb5308a36b00495fd6072d867ed2c5a37b3c
mvdbeek
parents: 3
diff changeset
14 RUN chown -R galaxy:users /home/galaxy && chmod g=rwx /home/galaxy