Mercurial > repos > mvdbeek > deseq_with_replicates
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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/deseq1_with_replicates commit f95b47ed1a09ce14d3b565e8ea56d8bf12c35814-dirty
| author | mvdbeek |
|---|---|
| date | Sat, 05 Mar 2016 07:02:52 -0500 |
| parents | |
| children |
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id baseMean baseMeanA baseMeanB foldChange log2FoldChange pval padj NM_030724 464.868786987954 42.7278970921829 746.296046918467 17.4662479950365 4.12649782447528 1.301203881287e-07 3.18794950915314e-05 NM_001290814 187.149839999681 13.8361846647093 302.692276889662 21.8768601478492 4.45133378666581 2.20753427324853e-06 0.000270422948472945 NM_009255 17377.4803462975 27214.4775715473 10819.482196131 0.397563472151408 -1.33074288569062 1.26299483519261e-05 0.00103144578207396 NM_008801 794.929008530628 238.766220843347 1165.70420032215 4.88219898193623 2.28753109569312 2.27017297587472e-05 0.00139048094772327 NM_029342 426.444164482568 102.585720376899 642.349793886348 6.26159071190768 2.64652920997787 2.93862583292896e-05 0.00143992665813519 NM_023645 1272.93826196929 2043.5349277896 759.207151422419 0.371516601501702 -1.42850141475866 6.31001964014258e-05 0.00257659135305822 NM_010472 948.952494632214 166.814206844757 1470.37801982385 8.81446519235758 3.13987303832141 9.62076604480214e-05 0.00336726811568075 NM_001033408 119.62526279713 10.067353877567 192.663868743505 19.1374884688235 4.25832960332563 0.000122215527847981 0.00374285054034442 NM_175382 1910.39709045197 2935.45700718525 1227.02381262979 0.418000948276996 -1.25842187967937 0.00016990111544303 0.00462508592039359 NM_199021 798.815536654893 342.796872715182 1102.82797928137 3.21714714182259 1.68578192166773 0.000235479574374799 0.00576924957218258 NM_175296 580.069211259048 42.3873901225727 938.523758683365 22.1415792755678 4.46868622268762 0.000261981858289968 0.00583505048009475 NM_177445 634.123989017518 251.161459424046 889.432342079833 3.54127716935331 1.82426976527713 0.000386356913372476 0.00788812031468805 NM_001097644 5656.42949344398 9785.54102308009 2903.68847368657 0.296732543130519 -1.75276493672982 0.000428557781643688 0.00807666588482335 NM_172841 255.340995570976 76.8729625733449 374.319684236064 4.86932819687967 2.28372274276223 0.00103305109562912 0.0180783941735096 NM_173760 7135.15414312214 10652.175633968 4790.47314922489 0.449717814823562 -1.15290805978294 0.00119487163224213 0.0195162366599547 NM_008869 14.2613474177756 35.653368544439 0 0 -Inf 0.00164781004679372 0.0252320913415289 NM_001081011 246.866528214717 77.0353110707106 360.087339644055 4.67431538393519 2.22475507847012 0.001900484724797 0.0273893386808979 NM_175460 173.915785480411 309.419841869487 83.5797478876932 0.270117609079986 -1.88834040208126 0.00270013168939119 0.0367517924389357 NM_172849 135.110038683475 25.633576260334 208.094346965569 8.11803803153208 3.02113109881538 0.00318585569976094 0.0410807708653385 NM_019570 667.236145828762 1001.9294894235 444.107250098934 0.443252000052885 -1.17380095398366 0.00353131292726281 0.0432585833589694 NM_025819 5469.28632187872 7436.56591598075 4157.76659247737 0.559097658711337 -0.838827791366467 0.00657852410213002 0.0767494478581835 NM_001014974 483.347071564526 236.628450845237 647.826152044052 2.73773567688085 1.45298316388533 0.00698778563875668 0.077818521886154 NM_026719 652.998273135163 949.926448892427 455.046155963654 0.479033041446754 -1.0618029251736 0.00850392397982781 0.0905852771764267 NM_133684 2878.96199510956 4027.59094501628 2113.20936183842 0.524683214032271 -0.930481459699431 0.00964104350011133 0.0984189857303032 NM_174874 346.67831283459 168.195766771353 465.666676876747 2.76859926867113 1.46915625091004 0.0112447463952348 0.107123964522455 NM_001081304 2722.19496356928 3655.36508406539 2100.08154990521 0.574520328779187 -0.799570152912335 0.0113682574595259 0.107123964522455 NM_030013 192.330601118414 73.361471801667 271.643353996245 3.70280676389146 1.88861926243159 0.0141665399744583 0.128548233101566 NM_011800 304.203328010883 466.439713158195 196.045737912676 0.420302415043691 -1.25050034869596 0.0155095948530449 0.135708954964143 NM_001003948 2725.66269217368 3786.72269120433 2018.28935948658 0.532991064852622 -0.907816747270382 0.0185797954855018 0.156967237722343 NM_001037725 6644.90338815206 8983.50890428911 5085.83304406069 0.566129905167956 -0.820794960491282 0.0195184752203024 0.158083992844955 NM_001039644 171.774567206686 269.664974721322 106.514295530262 0.394987504922864 -1.34012107924558 0.0200024644007902 0.158083992844955 NM_133239 296.723997013175 146.730914425186 396.719385405167 2.70372052787447 1.43494603405832 0.0206754478430046 0.158296397548004 NM_001004173 96.5355719291591 164.517942091383 51.2139918210098 0.311297303929091 -1.68363501286014 0.0231005369869886 0.171503986721582 NM_133832 5303.02897475022 6772.25221029071 4323.54681772322 0.638420821237789 -0.647420390998373 0.0317429800934462 0.228736180085127 NM_175642 864.44635753998 1232.45723936754 619.10576965494 0.502334482592391 -0.993279783131577 0.0342824597602441 0.239977218321709 NM_001013025 1799.57872468567 1275.34017247936 2149.0710928232 1.68509636816759 0.752831099360814 0.0408734235655782 0.274859721832748 NM_172513 5036.63898938401 3647.63477073224 5962.64180181852 1.63465976628509 0.708990388278606 0.0415094273788232 0.274859721832748 NM_018872 2350.94283519382 3131.69249478152 1830.44306213535 0.584490036996131 -0.774749661574018 0.0455973853061001 0.293983142105119 NM_001277076 61.7075003718312 10.6176392691796 95.767407773599 9.01965167074266 3.17307171922393 0.0487504695005019 0.30625294942623 NM_009581 51.4425572416925 9.18453233819633 79.6145738440232 8.66833181183595 3.11575437887322 0.0555651437498872 0.340336505468059 NM_145519 91.2776768442418 32.6763531894948 130.345225947406 3.98897714171211 1.99601885628217 0.0783668088831435 0.446610437950957 NM_026456 2274.50918863231 1687.97108458083 2665.53459133329 1.57913522078799 0.659134713951539 0.0783846891097598 0.446610437950957 NM_031179 19275.962335504 23699.3093701959 16327.064312376 0.688925742828138 -0.537579607207459 0.0776275790059344 0.446610437950957 NM_028250 34.9107637335827 4.22013924973014 55.3711800561511 13.1206997635663 3.7137727598514 0.0814670380353496 0.45362327996956 NM_028450 102.193058310328 159.031029818961 64.3010773045724 0.404330383685322 -1.30639347489113 0.0866827576083122 0.469012992330921 NM_028759 239.407924207461 121.778220435247 317.827726722269 2.60988972893775 1.38398885243676 0.0880595822335607 0.469012992330921 NM_028096 34.4641160569965 75.5388325713863 7.08097171407003 0.0937394909747686 -3.41519922907525 0.097362037867118 0.50752551654136 NM_011086 860.402467413874 1088.38700913089 708.41277293586 0.650883157362881 -0.619529512206765 0.101861225589857 0.51991667228156 NM_001011874 31.2253859854412 59.0581686994909 12.6701975094081 0.214537595533627 -2.2206976073619 0.109365651947175 0.54179978514201 NR_015470 140.174745384666 70.7288171584337 186.47203086882 2.63643643935286 1.39858921585836 0.110571384722859 0.54179978514201 NM_001081290 1894.79108003727 2338.77116055352 1598.80435969311 0.68360872010869 -0.548757294746738 0.132316722330643 0.589410854018317 NM_013862 113.776074791648 57.9773933020706 150.9751957847 2.60403559363383 1.38074916832232 0.12710501791434 0.589410854018317 NM_026626 8.02574816780758 17.7633785382913 1.53399458748513 0.086357141136097 -3.53354070622261 0.130305658605754 0.589410854018317 NM_025824 1704.51760445409 2082.07391057534 1452.81340037326 0.697772251500816 -0.51917186826099 0.130198102339998 0.589410854018317 NM_011273 1537.8772673651 1169.7213776569 1783.31452717056 1.52456350822856 0.608396249460829 0.129316719749806 0.589410854018317 NM_001198955 1607.35550052106 1974.40117105304 1362.65838683308 0.690162874096304 -0.5349912258629 0.150768534565022 0.659612338721971 NM_001081433 14169.9568942575 11747.7968160752 15784.7302797123 1.3436332383714 0.426139390057227 0.15646186116085 0.672511508498389 NM_172463 20.0278519388288 37.6605416637659 8.27272545553742 0.21966559932665 -2.18661914031399 0.161077837247264 0.680415002165167 NM_145381 383.866448168575 486.321197977616 315.563281629214 0.648878319393634 -0.623980132019078 0.182327740772926 0.720488653054304 NM_153179 140.134596577315 66.0335886493847 189.535268529269 2.87028575011477 1.52119437096094 0.177559765307991 0.720488653054304 NM_013673 79.6275242890593 117.934061846986 54.0898325837749 0.458644701426074 -1.12455112203831 0.179604467170355 0.720488653054304 NM_021433 2147.18991881435 2597.21521525258 1847.17305452219 0.71121293440542 -0.491646533046912 0.177582750126643 0.720488653054304 NM_133806 1019.67288853948 1244.98307482702 869.466097681126 0.698375837600789 -0.517924449403022 0.188671223035897 0.733721422917376 NM_181750 1375.31426768289 988.145510107309 1633.42677273327 1.6530225113869 0.725106371844446 0.194430161128502 0.744302960570048 NM_001081198 47.5134250677491 15.5068362253521 68.8511509626804 4.44005146904924 2.15057640038433 0.20472279169637 0.759955817660766 NM_001145781 201.285881149154 132.344444368864 247.24683900268 1.86820716337413 0.901654442735486 0.203792572233524 0.759955817660766 NM_009307 51.9979627179024 19.1370993118597 73.9052049885975 3.86188124878448 1.9493038027081 0.209671194392116 0.766708098896542 NM_028320 127.799832512654 66.3503148222639 168.766177639581 2.54356257527434 1.34685058699688 0.214283622577091 0.772051287226283 NM_027188 371.203150424209 255.385452415877 448.41494909643 1.7558359133402 0.812158028203934 0.24022315136493 0.784524820502114 NM_001033288 27.8616226858942 46.7817024336213 15.2482361874094 0.325944448239035 -1.61730199263742 0.239558035788244 0.784524820502114 NM_199007 63.9084663036558 91.9324757470352 45.2257933414029 0.4919457783977 -1.02342878246823 0.232759706150201 0.784524820502114 NM_172406 157.350236487001 80.5110648128793 208.576350936415 2.59065448235196 1.3733166149634 0.243359574541049 0.784524820502114 NM_001039493 1150.58792673418 1428.37333206825 965.397656511462 0.675872081085125 -0.565177874189458 0.226257950272297 0.784524820502114 NM_033563 2979.22536478403 3436.93270985466 2674.08713473694 0.778044657979358 -0.362075129911994 0.240158119030528 0.784524820502114 NM_008781 4.0544004515759 9.02616925175671 0.73988791812203 0.0819714208193061 -3.60873518527555 0.24336280146188 0.784524820502114 NM_001081386 99.9020312679628 149.652529033641 66.7350327575103 0.445933210674365 -1.16510044717315 0.24051935553781 0.784524820502114 NM_133826 2420.37799709927 2834.37415610363 2144.38055776303 0.756562274301456 -0.402469256162199 0.263038308231203 0.798126785755544 NM_145142 69.3473794860799 99.2642126414181 49.4028240491877 0.497690181935461 -1.00668016801455 0.270385809051878 0.798126785755544 NM_001001883 97.5005128917484 55.7010556033265 125.366817750696 2.25070811302918 1.17037897052378 0.263305472927496 0.798126785755544 NM_145128 14.9525463728557 0.902616925175671 24.3191660046423 26.9429536787261 4.75183611287642 0.266914403146554 0.798126785755544 NM_001033409 77.2720110305167 37.292400155324 103.925084947312 2.78676310761605 1.47859036950553 0.253048251025253 0.798126785755544 NM_001039184 285.262465095949 208.975876901623 336.120190558832 1.60841622268709 0.685640792526831 0.259614662807454 0.798126785755544 NM_033652 28.116902355404 7.33970771623508 41.9683654481833 5.71798865441894 2.51550775738948 0.267819107271986 0.798126785755544 NM_021605 818.922664876066 653.788520885111 929.012094203369 1.42096727691954 0.506873331519829 0.277349883538183 0.808937160319701 NM_001080809 293.592415712171 219.613311556608 342.911818482546 1.56143457813192 0.642872123772902 0.281470013640937 0.811295921670936 NM_009418 528.400801433587 421.973939194928 599.352042926026 1.42035321913366 0.506249749535657 0.288159590744194 0.812242294215837 NM_007733 235.995583838189 160.60655819268 286.254934268529 1.78233652155791 0.833769756695197 0.291254350713282 0.812242294215837 NM_010629 46.6916037868376 20.3920477705985 64.224641130997 3.14949444280907 1.65512026563225 0.295059445653916 0.812242294215837 NM_001109985 67.5635201677879 92.6807149966973 50.8187236151817 0.548320366507667 -0.86690903359276 0.292838624049461 0.812242294215837 NM_177235 40.0653036476286 59.5213017260315 27.0946382620267 0.455209101217907 -1.13539869244788 0.308346231932525 0.821139421994224 NM_029122 7819.19496883259 9036.25672533423 7007.82046449817 0.775522506443504 -0.366759444556658 0.305345183362496 0.821139421994224 NM_080844 1777.65747472144 2024.56854280344 1613.05009600011 0.796737705786194 -0.327823242494694 0.30472075961265 0.821139421994224 NM_019790 97.9969040181651 130.66967572847 76.2150562112951 0.583265059673594 -0.777776442380548 0.3120143754457 0.82197335466878 NM_001113391 29.4079904018623 10.3048985072265 42.1433849982861 4.08964580958584 2.03197590163135 0.328706867794713 0.8462382216563 NM_133235 25.2135209746682 45.2417794205865 11.8613486773893 0.26217688228222 -1.93138761484703 0.326985331499965 0.8462382216563 NM_001099276 458.290136786246 369.159024508198 517.710878304945 1.40240612834713 0.487904205628723 0.331587221546958 0.8462382216563 NM_001160386 966.020722248755 1129.64194518283 856.939906959368 0.75859427016998 -0.398599620208249 0.340768095934388 0.860702922720876 NM_011066 38.2214691585989 55.851447867914 26.4681500190554 0.47390266554327 -1.07733731921915 0.344302625650937 0.860756564127343 NM_007561 2879.83673030684 3260.16527769211 2626.28436538333 0.805567859811846 -0.311921970399474 0.352219905158578 0.871655320846986 NM_139270 1.0831403102108 2.70785077552701 0 0 -Inf 0.361031206899792 0.884526456904491 NM_001098528 45.3109093859619 63.9591902196161 32.8787221635257 0.514057824225577 -0.959997443578384 0.367703042560927 0.889040901573636 NM_145506 67.5121833024041 37.1142416830794 87.7774777152872 2.36506186667706 1.2418779229223 0.371782026511119 0.889040901573636 NM_177756 328.164893098357 250.432883891363 379.986232569686 1.51731764081957 0.601523136254061 0.373760052498304 0.889040901573636 NM_001033373 327.852090323009 386.98577461483 288.429634128461 0.7453236088989 -0.424061135641379 0.379153281228781 0.890762392270344 NM_001077425 8.81319414189195 0 14.6886569031533 Inf Inf 0.38401193854299 0.890762392270344 NM_177644 251.890380534713 197.047888427216 288.452041939711 1.46386771379312 0.549785186629022 0.385391075839414 0.890762392270344 NM_008922 2165.55846761846 2503.14641786452 1940.49983412108 0.775224261861821 -0.367314372018789 0.450653120578717 0.898817386939539 NM_011465 0.722093540140537 1.80523385035134 0 0 -Inf 0.399881803976858 0.898817386939539 NM_201365 0.188441539357115 0.471103848392788 0 0 -Inf 0.445303995647571 0.898817386939539 NM_173437 1225.15104646515 1356.8960123225 1137.32106922691 0.838178503657213 -0.254670573018945 0.413537999932838 0.898817386939539 NM_022563 372.99660018354 275.005743477733 438.323837987411 1.59387157680546 0.672535391580696 0.454911657063277 0.898817386939539 NM_001159751 0.565324618071345 1.41331154517836 0 0 -Inf 0.416115306518978 0.898817386939539 NM_183019 4.21693113230598 7.39909387364994 2.09548930474334 0.28320890916196 -1.82006144457377 0.400503256898516 0.898817386939539 NM_001290720 0.37688307871423 0.942207696785575 0 0 -Inf 0.432954694014542 0.898817386939539 NM_153556 423.231788631277 332.484266723754 483.730136569625 1.4548963213695 0.540916347652119 0.431022497475702 0.898817386939539 NM_175510 132.69794087079 89.1810487889722 161.709202258668 1.81326867596408 0.858592708183287 0.424480790516582 0.898817386939539 NM_172430 8.38600357296334 0 13.9766726216056 Inf Inf 0.425680654531199 0.898817386939539 NM_013784 846.494211026049 963.07763420699 768.771928905422 0.798245023661501 -0.325096440967662 0.452571331472871 0.898817386939539 NM_001113416 2224.26580319931 2518.69936732625 2027.97676044802 0.805168249436944 -0.312637811951268 0.41010818190919 0.898817386939539 NM_172516 2983.69678223329 3294.58016609682 2776.44119299094 0.842729893648414 -0.246857792944573 0.407936831310694 0.898817386939539 NM_020025 0.75376615742846 1.88441539357115 0 0 -Inf 0.397040832834711 0.898817386939539 NR_027640 0.188441539357115 0.471103848392788 0 0 -Inf 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