Mercurial > repos > mvdbeek > data_manager_fetch_genome_dbkeys_all_fasta_compressed

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit c6314fce6475715c091db463f26703440d71349c-dirty
author mvdbeek
date Thu, 25 Aug 2016 06:43:50 -0400
parents 39fc40852a3b
children
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39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
diff changeset
1 <?xml version="1.0"?>
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
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2 <data_managers>
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
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3
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
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4 <data_manager tool_file="data_manager/data_manager_fetch_genome_all_fasta_dbkeys.xml" id="fetch_genome_all_fasta_dbkeys">
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
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5 <data_table name="all_fasta">
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
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6 <output>
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
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7 <column name="value" />
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
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8 <column name="dbkey" />
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
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9 <column name="name" />
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
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10 <column name="path" output_ref="out_file" >
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
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11 <move type="file">
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
diff changeset
12 <source>${path}</source>
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
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13 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/seq/${path}</target>
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
diff changeset
14 </move>
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
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15 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/seq/${path}</value_translation>
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
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16 <value_translation type="function">abspath</value_translation>
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
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17 </column>
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
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18 </output>
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
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19 </data_table>
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
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20 <data_table name="__dbkeys__">
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
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21 <output>
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
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22 <column name="value" />
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
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23 <column name="name" />
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
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24 <column name="len_path" output_ref="out_file" >
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
diff changeset
25 <move type="file">
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
diff changeset
26 <source>${len_path}</source>
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
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27 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${value}/len/${len_path}</target>
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
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28 </move>
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
diff changeset
29 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${value}/len/${len_path}</value_translation>
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
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30 <value_translation type="function">abspath</value_translation>
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
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31 </column>
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
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32 </output>
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
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33 </data_table>
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
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34 </data_manager>
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
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35
39fc40852a3b planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit fc158bfe5f5927dc199321a2cf43310373cbc8ba-dirty
mvdbeek
parents:
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36 </data_managers>