Mercurial > repos > morinlab > vcf2maf

changeset 10:fa20a5e56cf2 draft default tip

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Uploaded
author morinlab
date Fri, 27 Jan 2017 20:25:23 -0500
parents 4e76e1a1790e
children
files vcf2maf.xml
diffstat 1 files changed, 2 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/vcf2maf.xml	Fri Jan 27 20:10:26 2017 -0500
+++ b/vcf2maf.xml	Fri Jan 27 20:25:23 2017 -0500
@@ -23,6 +23,8 @@
             --ref-fasta \${ENSEMBL_VEP_84_INSTALL_DIR}/cache/`echo $species_select.value | sed 's/-/\t/g' | cut -f1`/84_`echo $species_select.value | sed 's/-/\t/g' | cut -f2`/*.fa
             --species `echo $species_select.value | sed 's/-/\t/g' | cut -f1`
             --ncbi-build `echo $species_select.value | sed 's/-/\t/g' | cut -f2`;
+	    mv $output_maf temp.maf;
+	    grep -v version temp.maf > $output_maf;
     </command>
 
     <inputs>