# HG changeset patch
# User morinlab
# Date 1485565826 18000
# Node ID 4e76e1a1790e0947fb6a2469bc781c002bcaf169
# Parent  5ed8244ed6a7d5391e2b4d086b633ce6eaac20bc
Uploaded

diff -r 5ed8244ed6a7 -r 4e76e1a1790e vcf2maf.xml
--- a/vcf2maf.xml	Fri Jan 27 19:34:38 2017 -0500
+++ b/vcf2maf.xml	Fri Jan 27 20:10:26 2017 -0500
@@ -9,7 +9,7 @@
         perl \$VCF2MAF_SCRIPT_PATH/vcf2maf.pl    
             --input-vcf ./input.vcf
             --output-maf $output_maf
-
+	    --vep-forks 1
             #if $sampleid_source.sampleid_selector == "bamfile":
                 --tumor-id `basename $sampleid_source.sampleid_tumour | sed 's/.bam$//g'`
                 --normal-id `basename $sampleid_source.sampleid_normal | sed 's/.bam$//g'`