Mercurial > repos > morinlab > vcf2maf

diff vcf2maf.xml @ 9:4e76e1a1790e draft

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author morinlab
date Fri, 27 Jan 2017 20:10:26 -0500
parents 5ed8244ed6a7
children fa20a5e56cf2
line wrap: on
line diff
--- a/vcf2maf.xml	Fri Jan 27 19:34:38 2017 -0500
+++ b/vcf2maf.xml	Fri Jan 27 20:10:26 2017 -0500
@@ -9,7 +9,7 @@
         perl \$VCF2MAF_SCRIPT_PATH/vcf2maf.pl    
             --input-vcf ./input.vcf
             --output-maf $output_maf
-
+	    --vep-forks 1
             #if $sampleid_source.sampleid_selector == "bamfile":
                 --tumor-id `basename $sampleid_source.sampleid_tumour | sed 's/.bam$//g'`
                 --normal-id `basename $sampleid_source.sampleid_normal | sed 's/.bam$//g'`