Mercurial > repos > morinlab > strelka
view test-data/strelka.all.somatic.snvs.vcf @ 0:88141dfd5db1 draft
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| author | morinlab |
|---|---|
| date | Thu, 18 Aug 2016 19:34:55 -0400 |
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##fileformat=VCFv4.1 ##fileDate=20150916 ##source=strelka ##source_version=2.0.17.strelka1 ##startTime=Wed Sep 16 20:12:45 2015 ##reference=file:///home/galaxy3/tools-morinlab/tools/strelka/test-data/test.fa ##contig=<ID=chr1,length=84490> ##contig=<ID=chr2,length=70409> ##contig=<ID=chr3,length=56327> ##contig=<ID=chr4,length=42245> ##contig=<ID=chr5,length=28163> ##contig=<ID=chr6,length=14082> ##content=strelka somatic snv calls ##germlineSnvTheta=0.001 ##priorSomaticSnvRate=1e-06 ##INFO=<ID=QSS,Number=1,Type=Integer,Description="Quality score for any somatic snv, ie. for the ALT allele to be present at a significantly different frequency in the tumor and normal"> ##INFO=<ID=TQSS,Number=1,Type=Integer,Description="Data tier used to compute QSS"> ##INFO=<ID=NT,Number=1,Type=String,Description="Genotype of the normal in all data tiers, as used to classify somatic variants. One of {ref,het,hom,conflict}."> ##INFO=<ID=QSS_NT,Number=1,Type=Integer,Description="Quality score reflecting the joint probability of a somatic variant and NT"> ##INFO=<ID=TQSS_NT,Number=1,Type=Integer,Description="Data tier used to compute QSS_NT"> ##INFO=<ID=SGT,Number=1,Type=String,Description="Most likely somatic genotype excluding normal noise states"> ##INFO=<ID=SOMATIC,Number=0,Type=Flag,Description="Somatic mutation"> ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth for tier1 (used+filtered)"> ##FORMAT=<ID=FDP,Number=1,Type=Integer,Description="Number of basecalls filtered from original read depth for tier1"> ##FORMAT=<ID=SDP,Number=1,Type=Integer,Description="Number of reads with deletions spanning this site at tier1"> ##FORMAT=<ID=SUBDP,Number=1,Type=Integer,Description="Number of reads below tier1 mapping quality threshold aligned across this site"> ##FORMAT=<ID=AU,Number=2,Type=Integer,Description="Number of 'A' alleles used in tiers 1,2"> ##FORMAT=<ID=CU,Number=2,Type=Integer,Description="Number of 'C' alleles used in tiers 1,2"> ##FORMAT=<ID=GU,Number=2,Type=Integer,Description="Number of 'G' alleles used in tiers 1,2"> ##FORMAT=<ID=TU,Number=2,Type=Integer,Description="Number of 'T' alleles used in tiers 1,2"> ##FILTER=<ID=DP,Description="Greater than 3.0x chromosomal mean depth in Normal sample"> ##FILTER=<ID=BCNoise,Description="Fraction of basecalls filtered at this site in either sample is at or above 0.4"> ##FILTER=<ID=SpanDel,Description="Fraction of reads crossing site with spanning deletions in either sample exceeeds 0.75"> ##FILTER=<ID=QSS_ref,Description="Normal sample is not homozygous ref or ssnv Q-score < 15, ie calls with NT!=ref or QSS_NT < 15"> ##cmdline=/home/galaxy3/tools/strelka/strelka_workflow-1.0.14/libexec/consolidateResults.pl --config=/home/galaxy3/tools-morinlab/tools/strelka/test-data/strelkaAnalysis/config/run.config.ini ##maxDepth_chr1=88.1222748254231 ##maxDepth_chr2=87.8339274808618 ##maxDepth_chr3=88.4426118912777 ##maxDepth_chr4=86.2327612735235 ##maxDepth_chr5=88.3204559173384 ##maxDepth_chr6=84.97443544951 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NORMAL TUMOR chr1 375 . A G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:20,20:0,0:0,0:0,0 30:0:0:0:23,23:0,0:7,7:0,0 chr1 510 . A G . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 17:0:0:0:17,17:0,0:0,0:0,0 54:0:0:0:51,51:0,0:3,3:0,0 chr1 558 . A T . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 19:0:0:0:19,19:0,0:0,0:0,0 46:0:0:0:45,45:0,0:0,0:1,1 chr1 603 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:9,9:0,0:0,0:22,22 47:0:0:0:0,0:11,11:0,0:36,36 chr1 688 . A G . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:21,21:0,0:0,0:2,2 47:0:0:0:41,41:0,0:6,6:0,0 chr1 713 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:23,23:2,2 50:0:0:0:2,2:0,0:48,48:0,0 chr1 765 . G T . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:29,29:0,0 62:0:0:0:0,0:0,0:61,61:1,1 chr1 784 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:30,30:0,0 63:0:0:0:0,0:0,0:59,59:4,4 chr1 792 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:27,27:0,0:2,2 62:0:0:0:3,3:59,59:0,0:0,0 chr1 808 . G A,T . QSS_ref NT=het;QSS=75;QSS_NT=53;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:3,3:0,0:20,20:0,0 61:1:0:0:0,0:0,0:54,54:6,6 chr1 842 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:3:0:0:10,10:0,0:0,0:8,8 54:8:0:0:46,46:0,0:0,0:0,0 chr1 929 . C A . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:6:0:0:0,0:31,31:0,0:0,0 45:4:0:0:3,3:38,38:0,0:0,0 chr1 980 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:22,22:0,0:7,7 50:0:0:0:14,14:36,36:0,0:0,0 chr1 1117 . C A,T . QSS_ref;BCNoise NT=het;QSS=115;QSS_NT=67;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:14:0:0:6,6:10,10:0,0:0,0 52:28:0:0:0,0:20,20:0,0:4,4 chr1 1250 . G C . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:24,24:0,0 50:0:0:0:0,0:6,6:44,44:0,0 chr1 1302 . A T . QSS_ref NT=het;QSS=16;QSS_NT=13;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:26,26:0,0:2,2:0,0 52:0:0:0:49,49:0,0:0,0:3,3 chr1 1353 . T G . PASS NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:0,0:27,27 45:0:0:0:0,0:0,0:1,1:44,44 chr1 1396 . T C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:10,10:27,27 47:0:0:0:0,0:15,15:0,0:32,32 chr1 1513 . G C . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:33,33:0,0 46:0:0:0:0,0:1,1:45,45:0,0 chr1 1518 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:7,7:25,25 49:0:0:0:0,0:0,0:5,5:44,44 chr1 1646 . G C . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:0,0:36,36:0,0 40:0:0:0:0,0:7,7:33,33:0,0 chr1 1764 . C G,T . QSS_ref NT=het;QSS=9;QSS_NT=9;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:24,24:0,0:2,2 53:0:0:0:0,0:50,50:3,3:0,0 chr1 1804 . A C . PASS NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:29,29:0,0:1,1:0,0 49:0:0:0:47,47:2,2:0,0:0,0 chr1 1828 . T C . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:0,0:30,30 51:0:0:0:0,0:1,1:0,0:50,50 chr1 1835 . G T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:30,30:0,0 50:0:0:0:0,0:0,0:43,43:7,7 chr1 1874 . T A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:0,0:1,1:37,37 42:0:0:0:1,1:0,0:0,0:41,41 chr1 1888 . C A . QSS_ref NT=het;QSS=3;QSS_NT=2;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 44:0:0:0:3,3:41,41:0,0:0,0 45:0:0:0:0,0:43,43:0,0:2,2 chr1 1978 . T C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:4,4:26,26 52:0:0:0:0,0:3,3:0,0:49,49 chr1 2001 . G A . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:30,30:0,0 58:0:0:0:2,2:0,0:56,56:0,0 chr1 2052 . A G . PASS NT=ref;QSS=34;QSS_NT=34;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:34,34:0,0:0,0:0,0 57:0:0:0:39,39:0,0:18,18:0,0 chr1 2137 . C A,T . QSS_ref NT=het;QSS=14;QSS_NT=5;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:0,0:39,39:0,0:3,3 46:0:0:0:2,2:44,44:0,0:0,0 chr1 2250 . C G . PASS NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:34,34:0,0:0,0 47:0:0:0:0,0:41,41:6,6:0,0 chr1 2260 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:29,29:2,2:0,0 45:0:0:0:0,0:38,38:7,7:0,0 chr1 2299 . C A . QSS_ref NT=het;QSS=3;QSS_NT=3;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:2,2:25,25:0,0:0,0 53:0:0:0:0,0:51,51:2,2:0,0 chr1 2328 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:3,3:21,21 54:0:0:0:9,9:0,0:0,0:45,45 chr1 2398 . T C . QSS_ref NT=ref;QSS=3;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:1:0:0:0,0:2,2:0,0:36,36 46:0:0:0:0,0:0,0:2,2:44,44 chr1 2412 . C A,T . QSS_ref NT=het;QSS=468;QSS_NT=65;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:4:0:0:12,12:24,24:0,0:0,0 47:3:0:0:0,0:33,33:0,0:11,11 chr1 2534 . G C,T . QSS_ref NT=het;QSS=69;QSS_NT=49;SGT=GT->CG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:4:0:0:0,0:0,0:15,19:3,3 54:14:0:0:0,0:5,5:35,35:0,0 chr1 2592 . C T . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 19:0:0:0:0,0:19,23:0,0:0,0 52:0:0:0:0,0:51,51:0,0:1,1 chr1 2596 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:2,2:0,0:0,0:18,22 52:0:0:0:0,0:4,4:0,0:48,48 chr1 2610 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:0,0:0,0:22,26 49:0:0:0:1,1:0,0:0,0:48,48 chr1 2637 . G A,C . QSS_ref NT=het;QSS=366;QSS_NT=64;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:9,9:17,17:0,0 46:0:0:0:17,17:0,0:29,29:0,0 chr1 2704 . A C,G . QSS_ref NT=het;QSS=22;QSS_NT=22;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:26,26:0,0:9,9:0,0 48:0:0:0:46,46:2,2:0,0:0,0 chr1 2719 . C G . PASS NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:36,36:0,0:0,0 55:0:0:0:0,0:49,49:6,6:0,0 chr1 2808 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:2,2:28,28:0,0 62:0:0:0:0,0:0,0:58,58:4,4 chr1 2844 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:1,1:30,30:0,0 52:0:0:0:0,0:1,1:51,51:0,0 chr1 3039 . T C . BCNoise;QSS_ref NT=het;QSS=3;QSS_NT=3;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:12:0:0:0,0:0,0:1,1:7,8 48:28:0:0:0,0:2,2:0,0:18,19 chr1 3133 . T C . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:5:0:0:0,0:0,0:0,0:17,17 51:11:0:0:0,0:5,5:0,0:35,35 chr1 3188 . T A . QSS_ref NT=ref;QSS=7;QSS_NT=7;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:0,0:33,33 41:0:0:0:4,4:0,0:0,0:37,37 chr1 3302 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:4,4:29,29 53:0:0:0:0,0:0,0:2,2:51,51 chr1 3401 . C A,G . QSS_ref NT=het;QSS=176;QSS_NT=35;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:6,6:29,29:0,0:0,0 40:0:0:0:0,0:31,31:9,9:0,0 chr1 3505 . G C . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:33,33:0,0 39:0:0:0:0,0:6,6:33,33:0,0 chr1 3552 . C A,G . QSS_ref NT=het;QSS=5;QSS_NT=5;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:3,3:25,25:0,0:0,0 48:0:0:0:0,0:46,46:2,2:0,0 chr1 3620 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:25,25:0,0:0,0:0,0 57:0:0:0:56,56:0,0:0,0:1,1 chr1 3633 . T A,G . QSS_ref NT=het;QSS=48;QSS_NT=48;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:9,9:18,18 51:0:0:0:2,2:0,0:0,0:49,49 chr1 3649 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:24,24:0,0 49:0:0:0:4,4:0,0:45,45:0,0 chr1 3686 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:32,32:0,0:0,0:0,0 49:0:0:0:41,41:8,8:0,0:0,0 chr1 3762 . T G . PASS NT=ref;QSS=21;QSS_NT=21;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:0,0:0,0:38,38 37:0:0:0:0,0:0,0:3,3:34,34 chr1 3870 . A C . PASS NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:8:0:0:26,26:0,0:0,0:0,0 54:8:0:0:42,42:4,4:0,0:0,0 chr1 3905 . A T . QSS_ref NT=het;QSS=2;QSS_NT=2;SGT=AT->AT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:11:0:0:20,20:2,2:0,0:0,0 49:16:0:0:30,34:0,0:0,0:3,3 chr1 3950 . T C . QSS_ref;BCNoise NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:11:0:0:0,0:0,0:0,0:19,25 62:31:0:0:0,0:1,1:0,0:30,36 chr1 4007 . G A,C . QSS_ref NT=het;QSS=333;QSS_NT=63;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:9,9:0,0:18,18:0,0 55:9:0:0:0,0:9,9:37,37:0,0 chr1 4075 . C G . PASS NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:25,25:0,0:0,0 48:0:0:0:0,0:43,43:5,5:0,0 chr1 4091 . T A . QSS_ref NT=het;QSS=2;QSS_NT=2;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:2,2:0,0:24,24 47:0:0:0:4,4:0,0:0,0:43,43 chr1 4139 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:26,26:0,0:0,0 55:0:0:0:0,0:51,51:0,0:4,4 chr1 4152 . G A . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:24,24:0,0 54:0:0:0:4,4:0,0:50,50:0,0 chr1 4181 . C G,T . QSS_ref NT=het;QSS=256;QSS_NT=58;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:22,22:0,0:9,9 52:0:0:0:0,0:42,42:10,10:0,0 chr1 4281 . G C . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:33,33:0,0 59:0:0:0:0,0:6,6:53,53:0,0 chr1 4308 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:0,0:30,30 55:0:0:0:0,0:1,1:0,0:54,54 chr1 4313 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:29,29:1,1:0,0 52:0:0:0:3,3:49,49:0,0:0,0 chr1 4413 . A T . PASS NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:31,31:0,0:1,1:0,0 50:0:0:0:47,47:0,0:0,0:3,3 chr1 4429 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:0,0:27,27 50:0:0:0:5,5:0,0:0,0:45,45 chr1 4464 . T C,G . QSS_ref NT=het;QSS=86;QSS_NT=47;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:5,5:0,0:24,24 53:0:0:0:0,0:0,0:3,3:50,50 chr1 4576 . G A . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:27,27:0,0 43:0:0:0:1,1:0,0:42,42:0,0 chr1 4586 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:18,18:0,0:12,12 46:0:0:0:0,0:34,34:0,0:12,12 chr1 4691 . G A . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:25,25:0,0 54:0:0:0:3,3:0,0:51,51:0,0 chr1 4738 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:21,21:2,2:0,0:0,0 49:0:0:0:49,49:0,0:0,0:0,0 chr1 4754 . T A . PASS NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:0,0:29,29 57:0:0:0:7,7:0,0:0,0:50,50 chr1 4766 . C A,G . QSS_ref NT=het;QSS=60;QSS_NT=16;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:3,3:30,30:0,0:0,0 53:0:0:0:0,0:48,48:5,5:0,0 chr1 4807 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:30,30:0,0:0,0 55:0:0:0:0,0:54,54:0,0:1,1 chr1 4906 . G T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:35,35:0,0 57:0:0:0:0,0:0,0:55,55:2,2 chr1 4939 . T C . QSS_ref NT=het;QSS=3;QSS_NT=3;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:2,2:0,0:0,0:26,26 63:0:0:0:0,0:4,4:0,0:59,59 chr1 4963 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:23,23:0,0:0,0:9,9 61:0:0:0:44,44:0,0:0,0:17,17 chr1 5064 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:36,36:0,0:0,0 38:0:0:0:0,0:37,37:0,0:1,1 chr1 5120 . C A,G . QSS_ref NT=het;QSS=105;QSS_NT=41;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:27,27:5,5:0,0 49:0:0:0:4,4:45,45:0,0:0,0 chr1 5254 . T A . QSS_ref;BCNoise NT=conflict;QSS=6;QSS_NT=0;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:7:0:0:0,0:0,0:1,2:19,19 48:23:0:0:3,5:0,0:0,0:22,25 chr1 5311 . C G,T . QSS_ref NT=het;QSS=33;QSS_NT=7;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:3:0:0:0,0:34,34:3,3:0,0 43:5:0:0:0,0:35,35:0,0:3,3 chr1 5344 . A C,G . QSS_ref NT=het;QSS=277;QSS_NT=42;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:30,30:0,0:8,8:0,0 49:0:0:0:41,41:8,8:0,0:0,0 chr1 5394 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:4,4:28,28 43:0:0:0:0,0:0,0:9,9:34,34 chr1 5504 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:35,35:0,0:0,0:0,0 49:0:0:0:47,47:0,0:0,0:2,2 chr1 5578 . G A,C . QSS_ref NT=het;QSS=56;QSS_NT=21;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:3,3:0,0:28,28:0,0 49:0:0:0:0,0:4,4:45,45:0,0 chr1 5637 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:0,0:0,0:36,36 46:0:0:0:0,0:3,3:0,0:43,43 chr1 5655 . C A,T . QSS_ref NT=het;QSS=40;QSS_NT=15;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:3,3:34,34:0,0:0,0 47:0:0:0:0,0:43,43:0,0:4,4 chr1 5734 . C G . PASS NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:34,34:0,0:1,1 45:0:0:0:0,0:43,43:2,2:0,0 chr1 5811 . G A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:8,8:22,22:0,0 55:0:0:0:10,10:0,0:45,45:0,0 chr1 6026 . A C,G . 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QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:24,25:0,0 53:0:0:0:0,0:0,0:52,52:1,1 chr1 6260 . C A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:32,32:0,0:0,0 46:0:0:0:11,11:35,35:0,0:0,0 chr1 6386 . A C . QSS_ref NT=ref;QSS=11;QSS_NT=11;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:9:0:0:16,17:0,0:0,0:0,0 43:16:0:0:26,31:1,1:0,0:0,0 chr1 6405 . G A,T . QSS_ref NT=het;QSS=68;QSS_NT=51;SGT=GT->AG;SOMATIC;TQSS=2;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:4:0:0:0,0:0,0:19,19:3,3 46:11:0:0:3,3:0,0:32,33:0,0 chr1 6431 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:3:0:0:0,0:0,0:0,0:30,30 44:7:0:0:0,0:2,2:0,0:35,35 chr1 6465 . G T . 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QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:0,0:37,37 47:0:0:0:0,0:0,0:3,3:44,44 chr1 6810 . T C,G . QSS_ref NT=het;QSS=255;QSS_NT=61;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 46:0:0:0:0,0:15,15:0,0:31,31 46:0:0:0:0,0:0,0:7,7:39,39 chr1 6895 . A G,T . QSS_ref NT=het;QSS=92;QSS_NT=37;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:27,27:0,0:4,4:0,0 49:0:0:0:45,45:0,0:0,0:4,4 chr1 6922 . G A,T . QSS_ref NT=het;QSS=135;QSS_NT=49;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:4,4:0,0:18,18:0,0 49:0:0:0:0,0:0,0:38,38:11,11 chr1 7072 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:23,23:0,0:0,0 40:0:0:0:2,2:38,38:0,0:0,0 chr1 7097 . G T . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:30,30:0,0 39:0:0:0:0,0:0,0:36,36:3,3 chr1 7142 . C A . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:27,27:0,0:1,1 46:0:0:0:4,4:42,42:0,0:0,0 chr1 7172 . C A,T . QSS_ref NT=het;QSS=77;QSS_NT=42;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:22,22:0,0:4,4 46:0:0:0:11,11:35,35:0,0:0,0 chr1 7266 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:37,37:0,0:1,1:0,0 58:0:0:0:55,55:0,0:3,3:0,0 chr1 7306 . A G . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:40,40:0,0:0,0:0,0 46:0:0:0:42,42:0,0:4,4:0,0 chr1 7335 . A C,G . QSS_ref NT=het;QSS=53;QSS_NT=7;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:34,34:0,0:3,3:0,0 47:0:0:0:43,43:4,4:0,0:0,0 chr1 7378 . A T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:26,26:0,0:1,1:0,0 46:0:0:0:45,45:0,0:0,0:1,1 chr1 7427 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:4,4:20,20:0,0 46:0:0:0:0,0:11,11:35,35:0,0 chr1 7498 . C A . PASS NT=ref;QSS=28;QSS_NT=28;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:33,33:0,0:0,0 55:0:0:0:11,11:44,44:0,0:0,0 chr1 7658 . T A,G . QSS_ref NT=het;QSS=636;QSS_NT=69;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:21,21:0,0:0,0:13,13 56:0:0:0:0,0:0,0:14,14:42,42 chr1 7770 . C A,T . QSS_ref NT=het;QSS=209;QSS_NT=27;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:6,6:33,33:0,0:0,0 49:0:0:0:0,0:39,39:0,0:10,10 chr1 7822 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:1,1:34,34:0,0 57:0:0:0:0,0:0,0:56,56:1,1 chr1 7836 . G A,C . QSS_ref NT=het;QSS=36;QSS_NT=24;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:4,4:0,0:29,29:0,0 60:0:0:0:0,0:3,3:57,57:0,0 chr1 7872 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:27,27:0,0:4,4:0,0 72:0:0:0:71,71:0,0:1,1:0,0 chr1 7906 . T A,G . QSS_ref NT=het;QSS=104;QSS_NT=21;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:6,6:0,0:0,0:33,33 77:0:0:0:0,0:0,0:5,5:72,72 chr1 7917 . G A . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:0,0:38,38:0,0 72:0:0:0:14,14:0,0:58,58:0,0 chr1 7956 . G A,C . QSS_ref NT=het;QSS=83;QSS_NT=39;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:0,0:8,8:34,34:0,0 61:0:0:0:3,3:0,0:58,58:0,0 chr1 7977 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:0,0:35,35 55:0:0:0:0,0:6,6:0,0:49,49 chr1 8022 . A C . QSS_ref NT=ref;QSS=6;QSS_NT=6;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:32,32:0,0:1,1:0,0 39:0:0:0:37,37:2,2:0,0:0,0 chr1 8074 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:25,25:0,0:0,0 39:0:0:0:0,0:32,32:0,0:7,7 chr1 8157 . G T . 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QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:15,15:0,0:11,11:0,0 48:0:0:0:41,41:0,0:0,0:7,7 chr1 8844 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:23,23:0,0:0,0 60:0:0:0:0,0:55,55:0,0:5,5 chr1 9034 . A C,G . QSS_ref NT=het;QSS=208;QSS_NT=51;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:27,27:0,0:8,8:0,0 61:0:0:0:47,47:14,14:0,0:0,0 chr1 9127 . C A . PASS NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:29,29:1,1:0,0 63:0:0:0:5,5:58,58:0,0:0,0 chr1 9187 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:0,0:31,31:7,7 76:0:0:0:0,0:0,0:72,72:4,4 chr1 9194 . C A . 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PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:36,36:0,0:0,0 58:0:0:0:0,0:50,50:8,8:0,0 chr1 9441 . G A,C . QSS_ref NT=het;QSS=170;QSS_NT=41;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:5,5:0,0:27,27:0,0 62:0:0:0:0,0:9,9:53,53:0,0 chr1 9548 . C A,T . QSS_ref NT=het;QSS=64;QSS_NT=31;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:3,3:24,24:0,0:0,0 58:0:0:0:0,0:52,52:0,0:6,6 chr1 9634 . T C . PASS NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:1,1:34,34 55:0:0:0:0,0:3,3:0,0:52,52 chr1 9675 . T A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:0,0:0,0:0,0:39,39 53:0:0:0:6,6:0,0:0,0:47,47 chr1 9771 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:24,24:0,0 47:0:0:0:0,0:1,1:46,46:0,0 chr1 9823 . T A . QSS_ref NT=ref;QSS=7;QSS_NT=7;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:1,1:0,0:27,27 40:0:0:0:1,1:0,0:0,0:39,39 chr1 9839 . T A . PASS NT=ref;QSS=29;QSS_NT=29;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:0,0:37,37 44:0:0:0:8,8:0,0:0,0:36,36 chr1 9946 . C A . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:22,22:2,2:0,0 56:0:0:0:10,10:46,46:0,0:0,0 chr1 9965 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:22,22:0,0:4,4:0,0 55:0:0:0:50,50:5,5:0,0:0,0 chr1 10005 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:17,17:0,0:5,5:0,0 59:0:0:0:56,56:0,0:3,3:0,0 chr1 10054 . C G,T . QSS_ref NT=het;QSS=24;QSS_NT=24;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:23,23:0,0:2,2 56:0:0:0:0,0:49,49:7,7:0,0 chr1 10112 . A G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:31,31:0,0:2,2:0,0 48:0:0:0:42,42:0,0:0,0:6,6 chr1 10167 . G A,T . QSS_ref NT=het;QSS=80;QSS_NT=18;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 43:0:0:0:5,5:0,0:38,38:0,0 54:0:0:0:0,0:0,0:50,50:4,4 chr1 10211 . T A,G . QSS_ref NT=het;QSS=144;QSS_NT=35;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:6,6:29,29 52:0:0:0:5,5:0,0:0,0:47,47 chr1 10239 . G C . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:27,27:0,0 52:0:0:0:0,0:3,3:49,49:0,0 chr1 10265 . A C,T . QSS_ref NT=het;QSS=235;QSS_NT=58;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:17,17:6,6:0,0:0,0 56:0:0:0:43,43:0,0:0,0:13,13 chr1 10377 . T G . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:0,0:0,0:22,22 48:0:0:0:0,0:0,0:1,1:47,47 chr1 10422 . A T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:24,24:0,0:0,0:0,0 51:0:0:0:50,50:0,0:0,0:1,1 chr1 10450 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:1,1:0,0:0,0:26,26 48:0:0:0:0,0:2,2:0,0:46,46 chr1 10465 . C A,T . QSS_ref NT=het;QSS=182;QSS_NT=45;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:22,22:0,0:5,5 45:0:0:0:11,11:34,34:0,0:0,0 chr1 10530 . C G,T . QSS_ref NT=het;QSS=14;QSS_NT=14;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:17,17:0,0:5,5 51:0:0:0:0,0:50,50:1,1:0,0 chr1 10583 . T C . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:0,0:24,24 48:0:0:0:0,0:10,10:0,0:38,38 chr1 10668 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:0,0:37,37 45:0:0:0:0,0:2,2:0,0:43,43 chr1 10696 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:1,1:0,0:32,32:0,0 47:0:0:0:0,0:0,0:47,47:0,0 chr1 10823 . T C . QSS_ref NT=ref;QSS=7;QSS_NT=7;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:1,1:34,34 48:0:0:0:0,0:1,1:0,0:47,47 chr1 10869 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:0,0:26,26 54:0:0:0:0,0:1,1:0,0:53,53 chr1 10888 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:5,5:0,0:20,20:0,0 53:0:0:0:4,4:0,0:49,49:0,0 chr1 10923 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:25,25:0,0 59:0:0:0:0,0:1,1:58,58:0,0 chr1 10931 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:25,25:0,0:0,0 61:0:0:0:3,3:58,58:0,0:0,0 chr1 11035 . C A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:22,22:1,1:0,0 38:0:0:0:3,3:35,35:0,0:0,0 chr1 11091 . A G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:27,27:0,0:0,0:0,0 47:0:0:0:39,39:0,0:8,8:0,0 chr1 11193 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:37,37:2,2:0,0:0,0 56:0:0:0:56,56:0,0:0,0:0,0 chr1 11215 . T A,C . QSS_ref NT=het;QSS=3;QSS_NT=3;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:2,2:0,0:0,0:30,30 54:0:0:0:0,0:6,6:0,0:48,48 chr1 11278 . C A . QSS_ref NT=ref;QSS=14;QSS_NT=12;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:21,21:1,1:0,0 44:0:0:0:3,3:41,41:0,0:0,0 chr1 11424 . A T . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:26,26:0,0:1,1:0,0 55:0:0:0:49,49:0,0:0,0:6,6 chr1 11471 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:2,2:30,30:0,0:0,0 53:0:0:0:0,0:53,53:0,0:0,0 chr1 11488 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:0,0:30,30 55:0:0:0:0,0:0,0:3,3:52,52 chr1 11499 . T A,C . QSS_ref NT=het;QSS=45;QSS_NT=16;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:3,3:0,0:0,0:31,31 47:0:0:0:0,0:5,5:0,0:42,42 chr1 11548 . T A . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:1,1:0,0:30,30 47:0:0:0:1,1:0,0:0,0:46,46 chr1 11628 . A C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:36,36:0,0:0,0:0,0 43:0:0:0:39,39:4,4:0,0:0,0 chr1 11740 . G C,T . QSS_ref NT=het;QSS=161;QSS_NT=57;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:20,20:7,7 53:0:0:0:0,0:13,13:40,40:0,0 chr1 11842 . C G . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:1,1:28,28:0,0:0,0 52:0:0:0:0,0:51,51:1,1:0,0 chr1 11863 . C A,T . QSS_ref NT=het;QSS=6;QSS_NT=6;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:32,32:0,0:2,2 53:0:0:0:5,5:48,48:0,0:0,0 chr1 11965 . G A . QSS_ref NT=ref;QSS=4;QSS_NT=2;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:0,0:36,36:2,2 44:0:0:0:5,5:0,0:39,39:0,0 chr1 12034 . T . . QSS_ref NT=ref;QSS=1;QSS_NT=0;SGT=TT->TT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:2,2:33,33 42:0:0:0:2,2:0,0:0,0:40,40 chr1 12064 . G A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:2,2:0,0:34,34:0,0 44:0:0:0:0,0:5,5:39,39:0,0 chr1 12097 . G C . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:1,1:0,0:30,30:0,0 50:0:0:0:0,0:1,1:49,49:0,0 chr1 12237 . C G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:26,26:0,0:5,5 56:0:0:0:0,0:49,49:7,7:0,0 chr1 12312 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:0,0:23,23 55:0:0:0:0,0:0,0:9,9:46,46 chr1 12395 . C . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CC->CC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:6:0:0:0,0:29,29:0,0:0,0 48:4:0:0:2,2:42,42:0,0:0,0 chr1 12444 . C G,T . QSS_ref NT=het;QSS=18;QSS_NT=18;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:10:0:0:0,0:22,22:4,4:0,0 47:10:0:0:0,0:35,38:0,0:2,2 chr1 12505 . A C,T . QSS_ref NT=het;QSS=42;QSS_NT=18;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:6:0:0:32,32:4,4:0,0:0,0 58:15:0:0:40,40:0,0:0,0:3,4 chr1 12542 . G A . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:5:0:0:0,0:0,0:32,32:0,0 61:8:0:0:3,3:0,0:50,50:0,0 chr1 12568 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:2:0:0:3,3:0,0:0,0:25,25 57:2:0:0:7,7:0,0:0,0:48,48 chr1 12611 . A C,T . QSS_ref NT=het;QSS=71;QSS_NT=39;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:21,21:0,0:0,0:3,3 53:0:0:0:46,46:7,7:0,0:0,0 chr1 12674 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:6:0:0:0,0:20,20:0,0:0,0 55:8:0:0:0,0:44,44:3,3:0,0 chr1 12747 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:5:0:0:0,0:6,7:0,0:21,21 59:9:0:0:7,8:0,0:0,0:43,43 chr1 12809 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:1:0:0:0,0:0,0:26,26:3,3 68:1:0:0:0,0:0,0:63,63:4,4 chr1 12832 . A C . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:29,29:0,0:0,0:0,0 60:0:0:0:52,52:8,8:0,0:0,0 chr1 13001 . C A . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:6:0:0:0,0:27,27:0,0:0,0 49:10:0:0:12,13:27,28:0,0:0,0 chr1 13074 . C A . QSS_ref NT=het;QSS=2;QSS_NT=2;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:26,26:0,0:2,2 53:0:0:0:6,6:47,47:0,0:0,0 chr1 13120 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:1:0:0:0,0:0,0:27,27:0,0 59:1:0:0:4,4:0,0:54,54:0,0 chr1 13139 . T A,G . QSS_ref NT=het;QSS=58;QSS_NT=45;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:2:0:0:4,4:0,0:0,0:20,20 52:2:0:0:0,0:0,0:4,4:46,46 chr1 13195 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:7:0:0:0,0:0,0:4,4:11,11 56:18:0:0:0,0:0,0:7,8:31,32 chr1 13296 . C A,T . QSS_ref NT=het;QSS=58;QSS_NT=38;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:3:0:0:5,5:26,26:0,0:0,0 43:0:0:0:0,0:40,40:0,0:3,3 chr1 13355 . A G . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:21,21:0,0:8,8:0,0 49:0:0:0:49,49:0,0:0,0:0,0 chr1 13362 . A C . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:28,28:0,0:0,0:0,0 52:0:0:0:45,45:7,7:0,0:0,0 chr1 13455 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:1,1:24,24:0,0:0,0 55:6:0:0:0,0:42,42:0,0:7,7 chr1 13519 . G T . BCNoise;QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:9:0:0:0,0:0,0:17,17:3,3 54:26:0:0:0,0:0,0:28,30:0,0 chr1 13554 . A C,G . QSS_ref NT=het;QSS=70;QSS_NT=67;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:7:0:0:10,10:12,12:0,0:0,0 51:9:0:0:40,41:0,0:2,2:0,0 chr1 13572 . G T . PASS NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:5:0:0:0,0:0,0:22,22:0,0 47:4:0:0:0,0:0,0:35,35:8,8 chr1 13612 . A T . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:28,28:0,0:0,0:0,0 43:0:0:0:36,36:0,0:0,0:7,7 chr1 13690 . T C,G . QSS_ref NT=het;QSS=43;QSS_NT=35;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:3,3:22,22 48:0:0:0:0,0:3,3:0,0:45,45 chr1 13719 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:3,3:19,19:0,0:0,0 45:0:0:0:0,0:36,36:0,0:9,9 chr1 13798 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:27,27:3,3 44:0:0:0:0,0:0,0:43,43:1,1 chr1 13834 . C G,T . QSS_ref NT=het;QSS=75;QSS_NT=42;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:26,26:0,0:3,3 54:0:0:0:0,0:45,45:9,9:0,0 chr1 13908 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:2,2:0,0:0,0:24,24 57:0:0:0:0,0:9,9:0,0:48,48 chr1 13950 . C G,T . QSS_ref NT=het;QSS=15;QSS_NT=15;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:21,21:0,0:2,2 49:0:0:0:0,0:45,45:4,4:0,0 chr1 13961 . C T . PASS NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:24,24:0,0:0,0 44:0:0:0:0,0:38,38:0,0:6,6 chr1 13998 . T C . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:1,1:24,24 40:0:0:0:0,0:1,1:0,0:39,39 chr1 14013 . T A,C . QSS_ref NT=het;QSS=61;QSS_NT=43;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:4,4:0,0:21,21 44:0:0:0:10,10:0,0:0,0:34,34 chr1 14088 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:25,25:0,0:3,3:0,0 52:0:0:0:51,51:0,0:1,1:0,0 chr1 14164 . G A,C . QSS_ref NT=het;QSS=26;QSS_NT=26;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:3,3:0,0:26,26:0,0 56:0:0:0:0,0:4,4:52,52:0,0 chr1 14184 . C G,T . QSS_ref NT=het;QSS=143;QSS_NT=53;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:24,24:0,0:7,7 56:0:0:0:0,0:51,51:5,5:0,0 chr1 14211 . C T . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:21,21:1,1:0,0 60:0:0:0:0,0:58,58:0,0:2,2 chr1 14321 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:10,10:22,22:0,0:0,0 53:0:0:0:0,0:40,40:0,0:13,13 chr1 14414 . C A,T . QSS_ref NT=het;QSS=127;QSS_NT=31;SGT=CT->AC;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:8:0:0:0,0:28,29:0,0:5,5 52:7:0:0:7,7:38,42:0,0:0,0 chr1 14457 . G A,T . BCNoise;QSS_ref NT=het;QSS=21;QSS_NT=21;SGT=GT->AG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:16:0:0:0,0:0,0:9,12:7,7 59:31:0:0:1,1:0,0:27,30:0,0 chr1 14553 . G C . QSS_ref NT=conflict;QSS=3;QSS_NT=0;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:8:0:0:1,2:0,0:19,19:0,0 52:9:0:0:0,0:3,3:40,40:0,0 chr1 14584 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:1:0:0:10,10:0,0:0,0:16,16 53:2:0:0:0,0:2,2:0,0:49,49 chr1 14588 . C A . PASS NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:29,29:0,0:0,0 52:2:0:0:3,3:47,47:0,0:0,0 chr1 14633 . G A . PASS NT=ref;QSS=25;QSS_NT=25;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:35,35:0,0 50:0:0:0:9,9:0,0:41,41:0,0 chr1 14733 . G A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:33,33:2,2 60:0:0:0:10,10:0,0:50,50:0,0 chr1 14845 . A G,T . QSS_ref NT=het;QSS=32;QSS_NT=31;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:7:0:0:20,23:0,0:3,3:0,0 51:8:0:0:38,38:0,0:0,0:5,5 chr1 14930 . C A,G . QSS_ref NT=het;QSS=14;QSS_NT=14;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:2:0:0:0,0:31,31:6,6:0,0 59:3:0:0:2,2:54,54:0,0:0,0 chr1 15023 . C A . QSS_ref NT=ref;QSS=12;QSS_NT=12;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:4:0:0:0,0:21,21:0,0:0,0 59:9:0:0:1,1:49,49:0,0:0,0 chr1 15123 . G C . QSS_ref NT=ref;QSS=6;QSS_NT=6;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:7:0:0:0,0:0,0:27,27:0,0 51:19:0:0:0,0:3,3:29,31:0,0 chr1 15167 . G C,T . QSS_ref NT=het;QSS=331;QSS_NT=61;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:8:0:0:0,0:10,10:21,21:0,0 49:3:0:0:0,0:0,0:29,29:17,17 chr1 15270 . T A,C . QSS_ref NT=het;QSS=22;QSS_NT=22;SGT=CT->AT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 18:0:0:0:0,0:4,4:0,0:14,19 51:0:0:0:2,2:0,0:0,0:49,49 chr1 15346 . C T . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 18:0:0:0:0,0:18,20:0,0:0,0 57:0:0:0:0,0:55,55:0,0:2,2 chr1 15375 . T A . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:0,0:24,24 64:0:0:0:4,4:0,0:0,0:60,60 chr1 15400 . G A,C . QSS_ref NT=het;QSS=419;QSS_NT=57;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:10,10:24,24:0,0 61:0:0:0:15,15:0,0:46,46:0,0 chr1 15512 . G A,C . QSS_ref NT=het;QSS=122;QSS_NT=49;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:4,4:18,18:0,0 38:0:0:0:10,10:0,0:28,28:0,0 chr1 15599 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:0,0:10,10:26,26 55:0:0:0:6,6:0,0:0,0:49,49 chr1 15682 . G A,T . QSS_ref NT=het;QSS=55;QSS_NT=4;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:0,0:0,0:38,38:3,3 55:0:0:0:5,5:0,0:50,50:0,0 chr1 15767 . G . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=GG->GG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:25,25:0,0 42:0:0:0:2,2:0,0:40,40:0,0 chr1 15777 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:24,24:0,0:1,1 40:0:0:0:0,0:40,40:0,0:0,0 chr1 15778 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:22,22:3,3:0,0 40:0:0:0:0,0:40,40:0,0:0,0 chr1 15779 . A C . PASS NT=ref;QSS=26;QSS_NT=26;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:24,24:0,0:0,0:0,0 40:0:0:0:31,31:9,9:0,0:0,0 chr1 15871 . T . . QSS_ref NT=ref;QSS=1;QSS_NT=0;SGT=TT->TT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:3:0:0:1,1:0,0:0,0:18,18 48:11:0:0:0,0:2,2:0,0:35,36 chr1 15896 . C G . BCNoise NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:13:0:0:0,0:18,18:0,0:0,0 54:24:0:0:1,2:29,29:0,0:0,0 chr1 15898 . A T . BCNoise;QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:13:0:0:20,20:0,0:0,0:0,0 54:24:0:0:29,30:0,0:0,0:1,1 chr1 15926 . C G,T . QSS_ref NT=het;QSS=16;QSS_NT=16;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:9:0:0:0,0:23,23:3,3:0,0 50:10:0:0:0,0:38,38:0,0:2,2 chr1 15970 . C A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:5:0:0:2,2:27,27:0,0:0,0 53:4:0:0:0,0:42,42:7,7:0,0 chr1 15993 . A G,T . QSS_ref NT=het;QSS=7;QSS_NT=7;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:2:0:0:27,27:0,0:2,2:0,0 42:1:0:0:39,39:0,0:0,0:2,2 chr1 16012 . G A . QSS_ref NT=het;QSS=18;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:23,23:2,2 41:0:0:0:3,3:0,0:38,38:0,0 chr1 16037 . T A,G . QSS_ref NT=het;QSS=6;QSS_NT=6;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:5,5:0,0:0,0:24,24 42:0:0:0:0,0:0,0:8,8:34,34 chr1 16095 . T A . PASS NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:0,0:30,30 48:0:0:0:4,4:0,0:0,0:44,44 chr1 16171 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:29,29:0,0:8,8 50:0:0:0:2,2:48,48:0,0:0,0 chr1 16288 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 49:0:0:0:0,0:49,49:0,0:0,0 39:0:0:0:0,0:38,38:0,0:1,1 chr1 16393 . T C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:4,4:0,0:26,26 52:0:0:0:0,0:0,0:7,7:45,45 chr1 16449 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:29,29:0,0 48:0:0:0:0,0:4,4:44,44:0,0 chr1 16576 . T C . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:3:0:0:0,0:2,2:0,0:26,26 59:6:0:0:2,2:0,0:0,0:51,51 chr1 16595 . G A,C . QSS_ref NT=het;QSS=242;QSS_NT=61;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:3:0:0:0,0:6,6:15,15:0,0 56:9:0:0:8,8:0,0:39,39:0,0 chr1 16769 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:0,0:41,41:0,0:0,0 49:0:0:0:0,0:47,47:0,0:2,2 chr1 16782 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 43:0:0:0:0,0:36,36:0,0:7,7 52:0:0:0:0,0:43,43:0,0:9,9 chr1 16850 . C A,G . QSS_ref NT=het;QSS=137;QSS_NT=17;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:5,5:35,35:0,0:0,0 55:0:0:0:0,0:46,46:9,9:0,0 chr1 16921 . T C,G . QSS_ref NT=het;QSS=286;QSS_NT=59;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:2:0:0:0,0:0,0:9,9:21,21 56:6:0:0:0,0:8,8:0,0:42,42 chr1 16960 . T C . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:4:0:0:0,0:0,0:0,0:23,23 54:15:0:0:0,0:4,4:0,0:35,38 chr1 17075 . G A,C . QSS_ref NT=het;QSS=229;QSS_NT=42;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:3:0:0:0,0:6,6:26,26:0,0 52:3:0:0:17,17:0,0:32,32:0,0 chr1 17124 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:25,25:0,0:8,8:0,0 47:0:0:0:42,42:0,0:5,5:0,0 chr1 17136 . G C . PASS NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:28,28:0,0 45:0:0:0:0,0:4,4:41,41:0,0 chr1 17257 . A C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:2:0:0:33,33:0,0:0,0:1,1 49:1:0:0:47,47:1,1:0,0:0,0 chr1 17286 . C . . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=CC->CC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:4:0:0:0,0:28,28:2,2:0,0 47:6:0:0:0,0:39,39:0,0:2,2 chr1 17311 . G A,T . QSS_ref NT=het;QSS=116;QSS_NT=50;SGT=GT->AG;SOMATIC;TQSS=2;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:8:0:0:0,0:0,0:21,21:4,4 45:11:0:0:7,7:0,0:27,28:0,0 chr1 17440 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:1:0:0:5,5:0,0:32,32:0,0 50:0:0:0:3,3:0,0:47,47:0,0 chr1 17490 . A C,T . QSS_ref NT=het;QSS=127;QSS_NT=33;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:28,28:5,5:0,0:0,0 48:0:0:0:40,40:0,0:0,0:8,8 chr1 17599 . A C,T . QSS_ref NT=het;QSS=44;QSS_NT=29;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:28,28:0,0:0,0:3,3 45:0:0:0:40,40:5,5:0,0:0,0 chr1 17660 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:1,1:0,0:41,41:0,0 39:0:0:0:0,0:0,0:39,39:0,0 chr1 17666 . G A,T . QSS_ref NT=het;QSS=215;QSS_NT=46;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:0,0:0,0:32,32:9,9 42:1:0:0:9,9:0,0:32,32:0,0 chr1 17899 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:0,0:35,35 59:0:0:0:0,0:1,1:0,0:58,58 chr1 17932 . T A,G . QSS_ref NT=het;QSS=65;QSS_NT=26;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:0,0:3,3:33,33 47:0:0:0:6,6:0,0:0,0:41,41 chr1 17963 . T A,C . QSS_ref NT=het;QSS=188;QSS_NT=39;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:6,6:0,0:27,27 42:0:0:0:7,7:0,0:0,0:35,35 chr1 18032 . G A,C . QSS_ref NT=het;QSS=63;QSS_NT=42;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:3,3:19,19:0,0 37:0:0:0:3,3:0,0:34,34:0,0 chr1 18088 . T A . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:2:0:0:0,0:0,0:1,1:24,24 43:4:0:0:1,1:0,0:0,0:38,38 chr1 18118 . C A,G . QSS_ref NT=het;QSS=64;QSS_NT=43;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:4:0:0:3,3:22,22:0,0:0,0 48:8:0:0:0,0:37,37:3,3:0,0 chr1 18179 . G C . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:7:0:0:0,0:0,0:26,27:0,0 63:21:0:0:0,0:1,1:41,46:0,0 chr1 18183 . A G,T . QSS_ref NT=het;QSS=305;QSS_NT=66;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:6:0:0:17,17:0,0:0,0:10,11 63:20:0:0:35,37:0,0:8,11:0,0 chr1 18303 . T C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:3,3:23,23 54:0:0:0:0,0:2,2:0,0:52,52 chr1 18326 . C A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:29,29:0,0:0,0 43:0:0:0:1,1:42,42:0,0:0,0 chr1 18344 . C G,T . QSS_ref NT=het;QSS=104;QSS_NT=57;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:22,22:0,0:8,8 45:0:0:0:0,0:41,41:4,4:0,0 chr1 18433 . A C,G . QSS_ref NT=het;QSS=51;QSS_NT=49;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:2:0:0:20,20:6,6:0,0:0,0 51:5:0:0:43,43:0,0:3,3:0,0 chr1 18467 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:6:0:0:0,0:0,0:1,1:19,19 58:16:0:0:0,0:2,2:0,0:40,40 chr1 18570 . C A . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:5:0:0:0,0:23,23:0,0:1,1 52:5:0:0:2,2:45,45:0,0:0,0 chr1 18595 . T A,C . QSS_ref NT=het;QSS=246;QSS_NT=56;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:1:0:0:0,0:7,7:0,0:20,20 51:1:0:0:16,16:0,0:0,0:34,34 chr1 18694 . C T . QSS_ref NT=het;QSS=5;QSS_NT=5;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:22,26:2,2:0,0 45:0:0:0:0,0:43,43:0,0:2,2 chr1 18707 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:1,1:0,0:0,0:21,25 47:0:0:0:0,0:1,1:0,0:46,46 chr1 18715 . T C . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:1,1:0,0:0,0:22,26 47:0:0:0:0,0:3,3:0,0:44,44 chr1 18756 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:2,2:21,21:0,0 60:0:0:0:1,1:0,0:59,59:0,0 chr1 18764 . T A,C . QSS_ref NT=het;QSS=96;QSS_NT=56;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:4,4:0,0:17,17 63:0:0:0:8,8:0,0:0,0:55,55 chr1 18854 . G C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:2,2:22,22:0,0 53:0:0:0:0,0:0,0:45,45:8,8 chr1 18964 . T C . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:1,1:24,24 46:0:0:0:0,0:4,4:0,0:42,42 chr1 19027 . G A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:3,3:0,0:30,30:0,0 59:0:0:0:0,0:0,0:53,53:6,6 chr1 19101 . A C . PASS NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:36,36:0,0:0,0:1,1 72:0:0:0:67,67:5,5:0,0:0,0 chr1 19119 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:32,32:0,0:0,0 63:0:0:0:0,0:61,61:0,0:2,2 chr1 19132 . C A,G . QSS_ref NT=het;QSS=105;QSS_NT=23;SGT=AC->CG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:4,4:27,30:0,0:0,0 62:0:0:0:0,0:51,51:11,11:0,0 chr1 19175 . A C,G . QSS_ref NT=het;QSS=47;QSS_NT=35;SGT=AC->AG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 16:0:0:0:13,22:3,3:0,0:0,0 54:0:0:0:47,47:0,0:7,7:0,0 chr1 19229 . C G . QSS_ref NT=conflict;QSS=1;QSS_NT=0;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 6:0:0:0:0,3:6,17:0,0:0,0 49:0:0:0:0,0:47,47:2,2:0,0 chr1 19242 . T C . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 7:0:0:0:0,0:0,0:0,0:7,18 52:0:0:0:0,0:2,2:0,0:50,50 chr1 19265 . C G . QSS_ref NT=conflict;QSS=3070;QSS_NT=0;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 11:0:0:0:0,0:11,19:0,0:0,0 48:0:0:0:0,0:46,46:2,2:0,0 chr1 19285 . G C,T . QSS_ref NT=het;QSS=22;QSS_NT=22;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 15:0:0:0:0,0:2,2:13,18:0,0 55:0:0:0:0,0:0,0:48,48:7,7 chr1 19359 . G A,C . QSS_ref NT=het;QSS=16;QSS_NT=16;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:2,2:0,0:22,22:0,0 54:0:0:0:0,0:2,2:52,52:0,0 chr1 19401 . A T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:29,32:0,0:1,1:0,0 51:0:0:0:41,41:0,0:0,0:10,10 chr1 19422 . G A . PASS NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:31,37:0,0 42:0:0:0:1,1:0,0:41,41:0,0 chr1 19430 . T C,G . QSS_ref NT=het;QSS=135;QSS_NT=37;SGT=GT->CT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:5,5:23,29 41:0:0:0:0,0:5,5:0,0:36,36 chr1 19531 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:0,0:27,28 51:0:0:0:0,0:0,0:1,1:50,50 chr1 19655 . C A . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:21,25:0,0:0,0 48:0:0:0:5,5:43,43:0,0:0,0 chr1 19723 . G T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 6:0:0:0:0,0:0,0:6,17:0,1 50:0:0:0:0,0:0,0:47,47:3,3 chr1 19736 . C A . QSS_ref NT=conflict;QSS=3070;QSS_NT=0;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 6:0:0:0:0,10:6,9:0,0:0,0 50:0:0:0:11,11:39,39:0,0:0,0 chr1 19799 . C G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 15:0:0:0:0,0:15,21:0,0:0,0 56:0:0:0:0,0:48,48:8,8:0,0 chr1 19839 . G C,T . QSS_ref NT=het;QSS=64;QSS_NT=34;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:25,25:4,4 51:0:0:0:0,0:3,3:48,48:0,0 chr1 19888 . G T . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:32,35:0,0 46:0:0:0:0,0:0,0:43,43:3,3 chr1 19918 . C A . QSS_ref NT=ref;QSS=6;QSS_NT=6;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:30,35:0,0:0,0 40:5:0:0:3,3:32,32:0,0:0,0 chr1 19933 . T A,G . QSS_ref NT=het;QSS=6;QSS_NT=6;SGT=GT->AT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:0,0:2,2:20,26 44:7:0:0:2,2:0,0:0,0:35,35 chr1 20001 . T G . BCNoise;QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 9:5:0:0:0,0:0,0:0,0:4,7 53:28:0:0:0,0:0,0:3,4:22,23 chr1 20100 . A T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 13:0:0:0:13,21:0,0:0,0:0,0 54:0:0:0:52,52:0,0:0,0:2,2 chr1 20116 . T A . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 15:0:0:0:0,0:0,0:0,0:15,22 53:0:0:0:2,2:0,0:0,0:51,51 chr1 20137 . G C,T . QSS_ref NT=het;QSS=4;QSS_NT=4;SGT=GT->CG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:0,0:0,0:18,21:2,2 42:0:0:0:0,0:2,2:40,40:0,0 chr1 20152 . A T . PASS NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:20,20:0,0:0,0:0,0 43:0:0:0:37,37:0,0:0,0:6,6 chr1 20195 . A G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:19,19:0,0:7,7:0,0 39:0:0:0:34,34:0,0:0,0:5,5 chr1 20376 . C G,T . QSS_ref NT=het;QSS=14;QSS_NT=14;SGT=CG->CT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:26,28:2,2:0,0 51:0:0:0:0,0:48,48:0,0:3,3 chr1 20403 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:8,8:17,24 45:0:0:0:0,0:0,0:10,10:35,35 chr1 20466 . C G,T . QSS_ref NT=het;QSS=67;QSS_NT=43;SGT=CG->CT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 15:0:0:0:0,0:11,21:4,4:0,0 50:0:0:0:0,0:46,46:0,0:4,4 chr1 20588 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 10:0:0:0:0,0:10,20:0,0:0,0 58:0:0:0:0,0:57,57:1,1:0,0 chr1 20747 . C A,G . QSS_ref NT=het;QSS=52;QSS_NT=36;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:25,25:3,3:0,0 52:0:0:0:7,7:45,45:0,0:0,0 chr1 20865 . C A,G . QSS_ref NT=het;QSS=53;QSS_NT=37;SGT=AC->CG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:4,4:22,24:0,0:0,0 55:0:0:0:0,0:52,52:3,3:0,0 chr1 20884 . A C,T . QSS_ref NT=het;QSS=89;QSS_NT=61;SGT=AT->AC;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 18:0:0:0:15,18:0,0:0,0:3,3 51:0:0:0:48,48:3,3:0,0:0,0 chr1 20934 . C A . QSS_ref NT=conflict;QSS=3070;QSS_NT=0;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 11:0:0:0:0,0:11,18:0,1:0,0 53:0:0:0:3,3:50,50:0,0:0,0 chr1 21016 . A C,G . QSS_ref NT=het;QSS=59;QSS_NT=44;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:18,18:3,3:0,0:0,0 54:0:0:0:50,50:0,0:4,4:0,0 chr1 21057 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:22,22:1,1 58:0:0:0:0,0:0,0:48,48:10,10 chr1 21158 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:0,0:0,0:36,36 54:0:0:0:0,0:0,0:1,1:53,53 chr1 21162 . C T . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:38,38:0,0:0,0 53:0:0:0:0,0:50,50:0,0:3,3 chr1 21205 . G A,C . QSS_ref NT=het;QSS=35;QSS_NT=7;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:3,3:34,34:0,0 41:0:0:0:3,3:0,0:38,38:0,0 chr1 21215 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:3,3:34,34:0,0 38:0:0:0:1,1:0,0:37,37:0,0 chr1 21264 . G C,T . QSS_ref NT=het;QSS=38;QSS_NT=28;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:4,4:24,24:0,0 47:0:0:0:0,0:0,0:44,44:3,3 chr1 21322 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:25,25:6,6:0,0:0,0 54:0:0:0:42,42:0,0:12,12:0,0 chr1 21423 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:1,1:0,0:20,20:0,0 58:0:0:0:2,2:0,0:56,56:0,0 chr1 21438 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:3,3:0,0:0,0:18,18 53:0:0:0:0,0:18,18:0,0:35,35 chr1 21580 . G C,T . QSS_ref NT=het;QSS=53;QSS_NT=36;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:3,3:25,25:0,0 41:0:0:0:0,0:0,0:36,36:5,5 chr1 21606 . C G . 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QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 43:0:0:0:0,0:0,0:2,2:41,41 56:0:0:0:0,0:0,0:0,0:56,64 chr1 22188 . T G . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=TT->GT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:0,0:1,1:0,0:41,41 58:0:0:0:0,0:0,0:4,4:54,66 chr1 22213 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:36,36:3,3:0,0:0,0 60:0:0:0:60,79:0,0:0,0:0,0 chr1 22265 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:30,30:0,0:3,3 50:0:0:0:0,0:50,79:0,0:0,0 chr1 22682 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 49:0:0:0:39,39:10,10:0,0:0,0 0:0:0:0:0,0:0,0:0,0:0,0 chr1 23152 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:36,36:1,1 0:0:0:0:0,0:0,0:0,0:0,0 chr1 23683 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:26,26:0,0:7,7 0:0:0:0:0,0:0,0:0,0:0,0 chr1 26742 . A G,T . QSS_ref NT=het;QSS=9;QSS_NT=9;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:26,26:0,0:0,0:5,5 44:0:0:0:41,41:0,0:3,3:0,0 chr1 26830 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:3,3:31,31 33:0:0:0:0,0:0,0:0,0:33,33 chr1 26831 . G T . PASS NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:34,34:0,0 34:0:0:0:0,0:0,0:30,30:4,4 chr1 26870 . T C,G . QSS_ref NT=het;QSS=83;QSS_NT=27;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:3,3:29,29 53:0:0:0:0,0:20,20:0,0:33,33 chr1 26948 . G C . PASS NT=ref;QSS=24;QSS_NT=24;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:31,31:0,0 46:0:0:0:0,0:9,9:37,37:0,0 chr1 27002 . T A,G . QSS_ref NT=het;QSS=24;QSS_NT=24;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:8,8:24,24 53:0:0:0:1,1:0,0:0,0:52,52 chr1 27224 . A T . QSS_ref;BCNoise NT=ref;QSS=5;QSS_NT=5;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:14:0:0:17,17:0,0:0,0:0,0 41:21:0:0:19,20:0,0:0,0:1,3 chr1 27243 . C A,T . QSS_ref NT=het;QSS=119;QSS_NT=67;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:4:0:0:0,0:14,14:0,0:7,7 41:11:0:0:3,4:27,27:0,0:0,0 chr1 27289 . A C . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:3:0:0:27,27:0,0:0,0:1,1 46:4:0:0:39,39:3,3:0,0:0,0 chr1 27435 . A G,T . QSS_ref NT=het;QSS=112;QSS_NT=35;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:27,27:0,0:0,0:5,5 31:0:0:0:27,27:0,0:4,4:0,0 chr1 27471 . T A . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:1,1:36,36 24:0:0:0:5,5:0,0:0,0:19,19 chr1 27507 . T C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:6,6:24,24 23:0:0:0:0,0:2,2:0,0:21,21 chr1 27573 . A T . QSS_ref NT=ref;QSS=9;QSS_NT=9;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:35,35:0,0:0,0:0,0 37:0:0:0:36,36:0,0:0,0:1,1 chr1 27585 . T G . QSS_ref NT=ref;QSS=11;QSS_NT=2;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:2,2:0,0:34,34 37:0:0:0:0,0:0,0:3,3:34,34 chr1 27616 . T C,G . QSS_ref NT=het;QSS=252;QSS_NT=58;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:0,0:11,11:25,25 37:0:0:0:0,0:7,7:0,0:30,30 chr1 27668 . C A,G . QSS_ref NT=het;QSS=590;QSS_NT=72;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:15,15:14,14:0,0 37:0:0:0:17,17:20,20:0,0:0,0 chr1 28959 . C T . QSS_ref NT=het;QSS=4;QSS_NT=4;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:23,23:0,0:12,12 42:0:0:0:0,0:42,44:0,0:0,0 chr1 29113 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:12,12:0,0:12,12 64:0:0:0:0,0:0,0:0,0:64,64 chr1 29262 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:23,23:1,1 56:0:0:0:0,0:0,0:56,56:0,0 chr1 29411 . T C . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:0,0:34,34 71:0:0:0:0,0:2,3:0,0:69,70 chr1 29459 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:7,7:0,0:26,26:0,0 134:0:0:0:0,0:0,0:134,191:0,0 chr1 29742 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:2,2:29,29:0,0:0,0 188:0:0:0:0,0:188,194:0,0:0,0 chr1 29779 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:3,3:26,26:0,0:0,0 203:0:0:0:0,0:203,211:0,0:0,0 chr1 29827 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:3,3:0,0:28,28 195:0:0:0:0,0:0,0:0,0:195,201 chr1 29897 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:29,29:0,0:3,3:0,0 180:0:0:0:180,185:0,0:0,0:0,0 chr1 29924 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:30,30:2,2 171:0:0:0:0,0:0,0:171,175:0,0 chr1 29949 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:34,34:0,0:1,1 161:0:0:0:0,0:161,163:0,0:0,0 chr1 29977 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:23,23:0,0:9,9:0,0 166:0:0:0:166,167:0,0:0,0:0,0 chr1 30048 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:20,20:0,0:3,3 181:0:0:0:0,0:181,182:0,0:0,0 chr1 30165 . A T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:39,39:0,0:0,0:2,2 179:0:0:0:179,182:0,0:0,0:0,0 chr1 30185 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:27,27:5,5:0,0:0,0 200:0:0:0:200,203:0,0:0,0:0,0 chr1 30235 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:29,29:0,0:0,0:2,2 179:0:0:0:179,184:0,0:0,0:0,0 chr1 30274 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:5,5:0,0:25,25 186:0:0:0:0,0:0,0:0,0:186,193 chr1 30397 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 45:0:0:0:0,0:5,5:40,40:0,0 187:0:0:0:0,0:0,0:187,192:0,0 chr1 30447 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:9,9:22,22:0,0 194:0:0:0:0,0:0,0:194,197:0,0 chr1 30591 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:4,4:29,29:0,0 217:0:0:0:0,0:0,0:217,222:0,0 chr1 30667 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:27,31:4,4 198:0:0:0:0,0:0,0:198,204:0,0 chr1 30693 . G C . QSS_ref NT=het;QSS=3;QSS_NT=3;SGT=CG->CG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 19:0:0:0:0,0:8,8:11,15:0,0 179:0:0:0:0,0:0,0:179,184:0,0 chr1 30754 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:3,3:0,0:18,19 194:0:0:0:0,0:0,0:0,0:194,198 chr1 30787 . G T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:27,27:1,1 205:0:0:0:0,0:0,0:205,209:0,0 chr1 30809 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:29,29:2,2:0,0:0,0 213:0:0:0:213,219:0,0:0,0:0,0 chr1 30817 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:25,25:0,0:0,0:4,4 210:0:0:0:210,216:0,0:0,0:0,0 chr1 30861 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:37,37:0,0:3,3:0,0 225:0:0:0:225,234:0,0:0,0:0,0 chr1 30890 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:2,2:0,0:0,0:38,38 221:0:0:0:0,0:0,0:0,0:221,231 chr1 30912 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:7,7:0,0:0,0:33,33 209:0:0:0:0,0:0,0:0,0:209,216 chr1 30967 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:5,5:0,0:22,22 205:0:0:0:0,0:0,0:0,0:205,210 chr1 31030 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:2,2:0,0:31,31 232:0:0:0:0,0:0,0:0,0:232,237 chr1 31063 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:28,28:0,0:6,6:0,0 229:0:0:0:229,232:0,0:0,0:0,0 chr1 31314 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:27,27:0,0:4,4 201:0:0:0:0,0:201,204:0,0:0,0 chr1 31372 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:3,3:0,0:26,26:0,0 214:0:0:0:0,0:0,0:214,218:0,0 chr1 31417 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:1,1:0,0:25,25 231:0:0:0:0,0:0,0:0,0:231,232 chr1 31427 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:4,4:0,0:0,0:21,21 231:0:0:0:0,0:0,0:0,0:231,231 chr1 31462 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:7,7:20,20:0,0:0,0 203:0:0:0:0,0:203,206:0,0:0,0 chr1 31508 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:1,1:0,0:25,25 194:0:0:0:0,0:0,0:0,0:194,201 chr1 31686 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:2,2:36,36:0,0 209:0:0:0:0,0:0,0:209,213:0,0 chr1 31699 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:6,6:0,0:29,29 208:0:0:0:0,0:0,0:0,0:208,212 chr1 31719 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:24,24:0,0:0,0:2,2 211:0:0:0:211,217:0,0:0,0:0,0 chr1 31747 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:23,23:3,3:0,0 221:0:0:0:0,0:221,226:0,0:0,0 chr1 31782 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:1,1:0,0:26,26:0,0 221:0:0:0:0,0:0,0:221,227:0,0 chr1 31800 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:25,25:1,1:0,0 223:0:0:0:0,0:223,229:0,0:0,0 chr1 31810 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:25,25:0,0:0,0:5,5 216:0:0:0:216,221:0,0:0,0:0,0 chr1 31869 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:3,3:21,21 206:0:0:0:0,0:0,0:0,0:206,210 chr1 31935 . C A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:1,1:27,27:0,0:0,0 214:0:0:0:0,0:214,222:0,0:0,0 chr1 31962 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:8,8:0,0:21,21 208:0:0:0:0,0:0,0:0,0:208,213 chr1 32034 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:23,23:1,1 212:0:0:0:0,0:0,0:212,217:0,0 chr1 32050 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:2,2:0,0:28,28 226:0:0:0:0,0:0,0:0,0:226,232 chr1 32053 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:27,27:0,0:0,0:2,2 226:0:0:0:226,232:0,0:0,0:0,0 chr1 32102 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:28,28:0,0:0,0:7,7 222:0:0:0:222,228:0,0:0,0:0,0 chr1 32157 . T A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:3,3:0,0:0,0:36,36 199:0:0:0:0,0:0,0:0,0:199,208 chr1 32193 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:26,26:8,8:0,0 221:0:0:0:0,0:221,229:0,0:0,0 chr1 32253 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:19,19:0,0:0,0:5,5 232:0:0:0:232,235:0,0:0,0:0,0 chr1 32308 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:7,7:0,0:21,21 235:0:0:0:0,0:0,0:0,0:235,238 chr1 32411 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:31,31:0,0:1,1 247:0:0:0:0,0:247,254:0,0:0,0 chr1 32448 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:35,35:0,0:2,2:0,0 219:0:0:0:219,228:0,0:0,0:0,0 chr1 32507 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:22,22:7,7:0,0:0,0 255:0:0:0:255,272:0,0:0,0:0,0 chr1 32670 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:0,0:34,34:2,2 220:0:0:0:0,0:0,0:220,261:0,0 chr1 32746 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:20,20:0,0:1,1:0,0 156:0:0:0:156,233:0,0:0,0:0,0 chr1 32787 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:1,1:0,0:23,23 171:0:0:0:0,0:0,0:0,0:171,257 chr1 32856 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:0,0:33,33 103:0:0:0:0,0:0,0:1,1:102,105 chr1 32936 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:23,23:9,9 87:0:0:0:0,0:0,0:87,90:0,0 chr1 33151 . T A . QSS_ref NT=het;QSS=8;QSS_NT=8;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:12,12:0,0:0,0:17,17 57:0:0:0:0,0:0,0:0,0:57,78 chr1 33872 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:1,1:36,36:0,0:0,0 27:0:0:0:0,0:27,27:0,0:0,0 chr1 33894 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:32,32:0,0:8,8:0,0 23:0:0:0:23,23:0,0:0,0:0,0 chr1 33984 . T C,G . QSS_ref NT=het;QSS=131;QSS_NT=45;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:6,6:27,27 44:0:0:0:0,0:4,4:0,0:40,40 chr1 34019 . T C,G . QSS_ref NT=het;QSS=173;QSS_NT=58;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:7,7:16,16 45:0:0:0:0,0:9,9:0,0:36,36 chr1 34117 . G A,C . QSS_ref NT=het;QSS=157;QSS_NT=58;SGT=CG->AG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:0,0:6,6:14,17:0,0 52:0:0:0:8,8:0,0:44,44:0,0 chr1 34191 . A T . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:22,27:0,0:0,0:0,0 46:0:0:0:44,44:0,0:0,0:2,2 chr1 34228 . G T . PASS NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:25,26:0,0 41:0:0:0:0,0:0,0:35,35:6,6 chr1 34267 . A C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:23,23:0,0:0,0:3,3 47:0:0:0:43,43:4,4:0,0:0,0 chr1 34326 . G T . QSS_ref NT=het;QSS=17;QSS_NT=14;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:2,2:27,27:0,0 52:0:0:0:0,0:0,0:48,48:4,4 chr1 34357 . T A,C . QSS_ref NT=het;QSS=16;QSS_NT=9;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:2,2:0,0:0,0:34,34 43:0:0:0:0,0:5,5:0,0:38,38 chr1 34377 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:9,9:0,0:29,29:0,0 37:0:0:0:1,1:0,0:36,36:0,0 chr1 34391 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:0,0:35,35 39:0:0:0:0,0:4,4:0,0:35,35 chr1 34459 . A G . PASS NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:34,34:0,0:0,0:0,0 57:0:0:0:53,53:0,0:4,4:0,0 chr1 34495 . G A,C . QSS_ref NT=het;QSS=29;QSS_NT=17;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:3,3:0,0:33,33:0,0 56:0:0:0:0,0:5,5:51,51:0,0 chr1 34541 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:30,31:0,0:0,0:0,0 50:0:0:0:49,49:0,0:1,1:0,0 chr1 34566 . T A . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:2,2:0,0:27,29 51:0:0:0:2,2:0,0:0,0:49,49 chr1 34583 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:5,5:0,0:17,20 53:0:0:0:1,1:0,0:0,0:52,52 chr1 34616 . T A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 14:0:0:0:0,0:0,1:0,0:14,17 57:0:0:0:4,4:0,0:0,0:53,53 chr1 34734 . T A . QSS_ref;BCNoise NT=ref;QSS=5;QSS_NT=5;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:12:0:0:0,0:0,0:1,1:17,17 48:26:0:0:0,0:0,0:0,1:22,25 chr1 34798 . A C,G . QSS_ref NT=het;QSS=65;QSS_NT=44;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:4:0:0:18,18:3,3:0,0:0,0 56:5:0:0:48,48:0,0:3,3:0,0 chr1 34864 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:32,32:0,0 45:0:0:0:0,0:0,0:44,44:1,1 chr1 34871 . T C,G . QSS_ref NT=het;QSS=93;QSS_NT=30;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:4,4:27,27 44:0:0:0:0,0:4,4:0,0:40,40 chr1 34890 . C A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:27,27:0,0:0,0 46:0:0:0:3,3:43,43:0,0:0,0 chr1 34932 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:5,5:0,0:0,0:22,22 49:0:0:0:0,0:3,3:0,0:46,46 chr1 34974 . A C,G . QSS_ref NT=het;QSS=305;QSS_NT=51;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:28,28:9,9:0,0:0,0 59:0:0:0:41,41:0,0:18,18:0,0 chr1 35092 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:0,0:33,33 58:0:0:0:0,0:2,2:0,0:56,56 chr1 35118 . C G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:26,26:0,0:0,0 52:0:0:0:0,0:51,51:1,1:0,0 chr1 35160 . C A . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:2:0:0:0,0:27,27:0,0:0,0 52:4:0:0:3,3:45,45:0,0:0,0 chr1 35202 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:6:0:0:0,0:26,27:1,1:0,0 46:9:0:0:0,0:36,36:0,0:1,1 chr1 35258 . T C,G . QSS_ref NT=het;QSS=336;QSS_NT=65;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:5:0:0:0,0:0,0:8,8:15,15 43:4:0:0:0,0:11,11:0,0:28,28 chr1 35415 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:19,19:0,0:0,0:3,3 56:0:0:0:56,56:0,0:0,0:0,0 chr1 35482 . T C . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:0,0:25,25 59:0:0:0:0,0:2,2:0,0:57,57 chr1 35528 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:1,1:29,29:0,0:0,0 57:0:0:0:0,0:57,57:0,0:0,0 chr1 35540 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:0,0:30,30 51:0:0:0:0,0:0,0:1,1:50,50 chr1 35541 . C A,G . QSS_ref NT=het;QSS=213;QSS_NT=49;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:23,23:6,6:0,0 50:0:0:0:7,7:43,43:0,0:0,0 chr1 35610 . T A . PASS NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:0,0:29,29 65:0:0:0:3,3:0,0:0,0:62,62 chr1 35645 . T C . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:0,0:33,33 62:0:0:0:0,0:3,3:0,0:59,59 chr1 35659 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:30,30:0,0:0,0:2,2 61:0:0:0:59,59:0,0:0,0:2,2 chr1 35699 . G A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:24,27:3,3 54:0:0:0:3,3:0,0:51,51:0,0 chr1 35761 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:1,1:0,0:19,22:0,0 55:0:0:0:5,5:0,0:50,50:0,0 chr1 35803 . T A,C . QSS_ref NT=het;QSS=97;QSS_NT=43;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:4:0:0:0,0:4,4:0,0:21,21 45:5:0:0:10,10:0,0:0,0:30,30 chr1 35889 . G A . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 19:6:0:0:0,0:0,0:13,15:0,0 59:18:0:0:6,6:0,0:35,37:0,0 chr1 35967 . G T . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:0,0:0,0:20,23:0,0 56:0:0:0:0,0:0,0:49,49:7,7 chr1 35980 . C G,T . QSS_ref NT=het;QSS=4;QSS_NT=4;SGT=CG->CT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:21,24:2,2:0,0 54:0:0:0:0,0:50,50:0,0:4,4 chr1 36013 . C A,T . QSS_ref NT=het;QSS=87;QSS_NT=39;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:4,4:23,23:0,0:0,0 53:0:0:0:0,0:44,44:0,0:9,9 chr1 36146 . G A,T . QSS_ref NT=het;QSS=173;QSS_NT=47;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:26,26:6,6 46:0:0:0:7,7:0,0:39,39:0,0 chr1 36264 . G T . QSS_ref NT=conflict;QSS=9;QSS_NT=0;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 14:0:0:0:0,0:0,2:14,16:0,0 57:0:0:0:0,0:0,0:54,54:3,3 chr1 36463 . G C . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 14:0:0:0:0,0:0,0:14,18:0,1 59:0:0:0:0,0:3,3:56,56:0,0 chr1 36669 . C G,T . QSS_ref NT=het;QSS=248;QSS_NT=63;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:20,20:0,0:12,12 52:0:0:0:0,0:46,46:6,6:0,0 chr1 36786 . C A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:20,20:1,1:0,0 60:0:0:0:8,8:52,52:0,0:0,0 chr1 36824 . G C,T . QSS_ref NT=het;QSS=83;QSS_NT=21;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:31,31:4,4 60:0:0:0:0,0:4,4:56,56:0,0 chr1 36837 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:37,37:0,0 56:0:0:0:0,0:4,4:52,52:0,0 chr1 36913 . G C,T . QSS_ref NT=het;QSS=8;QSS_NT=8;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:2,2:31,31:0,0 56:0:0:0:0,0:0,0:53,53:3,3 chr1 36935 . T G . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:0,0:24,24 53:0:0:0:0,0:0,0:8,8:45,45 chr1 37001 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:15,15:6,6:0,0:0,0 53:0:0:0:45,45:0,0:8,8:0,0 chr1 37053 . T G . QSS_ref NT=ref;QSS=16;QSS_NT=13;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:2,2:0,0:26,26 61:0:0:0:0,0:0,0:7,7:54,54 chr1 37116 . G C,T . QSS_ref NT=het;QSS=138;QSS_NT=58;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:6,6:20,20:0,0 51:0:0:0:0,0:0,0:47,47:4,4 chr1 37161 . C G,T . QSS_ref NT=het;QSS=164;QSS_NT=54;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:17,17:0,0:5,5 46:0:0:0:0,0:40,40:6,6:0,0 chr1 37253 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:0,0:28,30 47:0:0:0:0,0:0,0:10,10:37,37 chr1 37420 . G A,C . QSS_ref NT=het;QSS=373;QSS_NT=66;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:9,9:0,0:18,18:0,0 51:0:0:0:0,0:15,15:36,36:0,0 chr1 37610 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:19,19:0,0:6,6 53:1:0:0:6,6:46,46:0,0:0,0 chr1 37643 . C A . PASS NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 19:2:0:0:0,0:17,17:0,0:0,0 41:5:0:0:14,14:22,22:0,0:0,0 chr1 37705 . T A . QSS_ref;BCNoise NT=ref;QSS=13;QSS_NT=13;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:11:0:0:0,0:0,0:0,0:15,15 44:27:0:0:2,2:0,0:0,0:15,16 chr1 37737 . G T . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:7:0:0:0,0:0,0:20,21:0,0 44:9:0:0:0,0:0,0:32,32:3,4 chr1 37800 . T . . QSS_ref NT=conflict;QSS=1;QSS_NT=0;SGT=TT->TT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 17:1:0:0:1,1:0,0:0,0:15,20 47:5:0:0:0,0:2,2:0,0:40,40 chr1 37909 . G A . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:2,2:23,23:0,0 48:6:0:0:4,4:0,0:38,38:0,0 chr1 38054 . A G . PASS NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:36,36:0,0:0,0:1,1 39:0:0:0:36,36:0,0:3,3:0,0 chr1 38142 . G A,C . QSS_ref NT=het;QSS=86;QSS_NT=45;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:4,4:0,0:20,20:0,0 57:0:0:0:0,0:13,13:44,44:0,0 chr1 38252 . G A,T . QSS_ref NT=het;QSS=255;QSS_NT=57;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:19,19:7,7 39:0:0:0:10,10:0,0:29,29:0,0 chr1 38319 . C A,T . QSS_ref NT=het;QSS=124;QSS_NT=53;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:21,21:0,0:5,5 33:0:0:0:4,4:29,29:0,0:0,0 chr1 38366 . T A,G . QSS_ref NT=het;QSS=67;QSS_NT=43;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:5,5:23,23 47:0:0:0:3,3:0,0:0,0:44,44 chr1 38478 . A G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 44:0:0:0:41,41:0,0:0,0:3,3 50:0:0:0:48,48:0,0:2,2:0,0 chr1 38496 . T A,G . QSS_ref NT=het;QSS=403;QSS_NT=57;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:0,0:0,0:12,12:30,30 54:0:0:0:11,11:0,0:0,0:43,43 chr1 38553 . T G . PASS NT=ref;QSS=19;QSS_NT=19;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:0,0:37,37 46:0:0:0:0,0:0,0:2,2:44,44 chr1 38599 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:5,5:0,0:0,0:26,26 44:0:0:0:0,0:2,2:0,0:42,42 chr1 38632 . G A,T . QSS_ref NT=het;QSS=23;QSS_NT=23;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:24,24:2,2 50:0:0:0:6,6:0,0:44,44:0,0 chr1 38725 . G A . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:30,30:0,0 52:0:0:0:3,3:0,0:49,49:0,0 chr1 38816 . T C . PASS NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:4:0:0:0,0:0,0:0,0:28,28 56:12:0:0:0,0:6,6:0,0:38,38 chr1 39000 . T C,G . QSS_ref NT=het;QSS=250;QSS_NT=30;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 50:0:0:0:0,0:0,0:10,10:40,40 44:0:0:0:0,0:9,9:0,0:35,35 chr1 39087 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:0,0:29,29 60:0:0:0:0,0:2,2:0,0:58,58 chr1 39195 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:2,2:0,0:0,0:29,29 47:0:0:0:0,0:0,0:0,0:47,47 chr1 39344 . C G . QSS_ref NT=ref;QSS=22;QSS_NT=4;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:2,2:39,39:0,0:0,0 47:0:0:0:0,0:41,41:6,6:0,0 chr1 39384 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:37,37:1,1:0,0 47:0:0:0:0,0:46,46:0,0:1,1 chr1 39427 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:35,35:0,0:0,0 55:0:0:0:1,1:54,54:0,0:0,0 chr1 39445 . C A . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:37,37:0,0:0,0 58:0:0:0:1,1:57,57:0,0:0,0 chr1 39447 . A C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:32,32:0,0:0,0:4,4 58:0:0:0:48,48:10,10:0,0:0,0 chr1 39723 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:6,6:0,0:31,31:0,0 45:0:0:0:2,2:0,0:43,43:0,0 chr1 39751 . G . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=GG->GG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:0,0:36,36:0,0 48:0:0:0:0,0:2,2:46,46:0,0 chr1 39784 . G A,T . QSS_ref NT=het;QSS=178;QSS_NT=25;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 43:0:0:0:0,0:0,0:37,37:6,6 52:0:0:0:6,6:0,0:46,46:0,0 chr1 39821 . G A,T . QSS_ref NT=het;QSS=56;QSS_NT=8;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:34,34:3,3 47:0:0:0:6,6:0,0:41,41:0,0 chr1 39836 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:0,0:34,34 41:0:0:0:2,2:0,0:0,0:39,39 chr1 39852 . G C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:0,0:34,34:2,2 39:0:0:0:0,0:2,2:37,37:0,0 chr1 40034 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:2,2:0,0:30,30 56:0:0:0:0,0:0,0:2,2:54,54 chr1 40056 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:36,36:1,1:0,0 56:0:0:0:1,1:55,55:0,0:0,0 chr1 40064 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:35,35:0,0 55:0:0:0:0,0:0,0:52,52:3,3 chr1 40103 . G A,T . QSS_ref NT=het;QSS=329;QSS_NT=58;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:8,8:0,0:20,20:0,0 57:0:0:0:0,0:0,0:46,46:11,11 chr1 40169 . C A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:21,21:0,0:0,0 40:0:0:0:1,1:39,39:0,0:0,0 chr1 40182 . G T . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:28,28:0,0 44:0:0:0:0,0:0,0:43,43:1,1 chr1 40198 . G A,C . QSS_ref NT=het;QSS=120;QSS_NT=29;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:1:0:0:0,0:4,4:27,27:0,0 38:0:0:0:7,7:0,0:31,31:0,0 chr1 40277 . G A,C . BCNoise;QSS_ref NT=het;QSS=31;QSS_NT=28;SGT=AG->CG;SOMATIC;TQSS=2;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:9:0:0:3,3:0,0:24,24:0,0 45:19:0:0:0,0:4,4:22,24:0,0 chr1 40431 . A C,T . QSS_ref NT=het;QSS=24;QSS_NT=24;SGT=AC->AT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:18,19:2,2:0,0:0,0 58:0:0:0:55,55:0,0:0,0:3,3 chr1 40483 . G A . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 17:0:0:0:0,0:0,0:17,19:0,0 44:0:0:0:2,2:0,0:42,42:0,0 chr1 40538 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:1,1:0,0:20,26 46:0:0:0:6,6:0,0:0,0:40,40 chr1 40648 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:1,1:0,0:22,26 60:0:0:0:0,0:0,0:2,2:58,58 chr1 40657 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:24,26:2,2 58:0:0:0:0,0:0,0:58,58:0,0 chr1 40688 . C T . QSS_ref NT=het;QSS=2;QSS_NT=2;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:34,34:2,2:0,0 66:0:0:0:0,0:64,64:0,0:2,2 chr1 40709 . A G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:35,35:0,0:1,1:0,0 66:0:0:0:61,61:0,0:5,5:0,0 chr1 40769 . C A,T . QSS_ref NT=het;QSS=58;QSS_NT=16;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:3,3:30,30:0,0:0,0 45:0:0:0:0,0:40,40:0,0:5,5 chr1 40886 . A C . QSS_ref NT=ref;QSS=17;QSS_NT=11;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:21,21:0,0:1,1:0,0 55:0:0:0:47,47:8,8:0,0:0,0 chr1 40907 . A T . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 19:0:0:0:19,19:0,0:0,0:0,0 48:0:0:0:45,45:0,0:0,0:3,3 chr1 40967 . G C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:4,4:24,24:0,0 58:0:0:0:0,0:0,0:54,54:4,4 chr1 41022 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 18:0:0:0:0,0:0,0:18,24:0,0 57:0:0:0:2,2:0,0:55,55:0,0 chr1 41028 . A G . QSS_ref NT=ref;QSS=10;QSS_NT=10;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 15:0:0:0:15,23:0,0:0,0:0,0 56:0:0:0:54,54:0,0:2,2:0,0 chr1 41081 . C T . QSS_ref NT=conflict;QSS=3070;QSS_NT=0;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 6:0:0:0:0,0:6,11:0,0:0,6 47:0:0:0:0,0:35,35:0,0:12,12 chr1 41196 . T G . QSS_ref NT=het;QSS=2;QSS_NT=2;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:2,2:0,0:0,0:31,31 48:0:0:0:0,0:0,0:3,3:45,45 chr1 41232 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:1,1:0,0:35,35:0,0 51:0:0:0:0,0:0,0:50,50:1,1 chr1 41257 . T A,G . QSS_ref NT=het;QSS=754;QSS_NT=69;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:18,18:13,13 53:0:0:0:21,21:0,0:0,0:32,32 chr1 41433 . A C . PASS NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:31,31:0,0:0,0:0,0 55:1:0:0:51,51:3,3:0,0:0,0 chr1 41458 . G A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:4:0:0:0,0:0,0:25,25:4,4 51:3:0:0:5,5:0,0:43,43:0,0 chr1 41523 . T C,G . BCNoise;QSS_ref NT=het;QSS=35;QSS_NT=35;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:17:0:0:0,0:0,0:2,2:12,12 49:27:0:0:0,0:4,4:0,0:18,18 chr1 41564 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:10:0:0:0,0:16,16:0,0:0,0 45:13:0:0:0,0:29,30:0,0:3,3 chr1 41585 . A C,T . QSS_ref NT=het;QSS=171;QSS_NT=63;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:8:0:0:12,12:0,0:0,0:5,5 35:8:0:0:17,17:10,10:0,0:0,0 chr1 41726 . G C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:28,28:0,0 51:0:0:0:0,0:2,2:49,49:0,0 chr1 41746 . G A . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:27,27:0,0 46:0:0:0:11,11:0,0:35,35:0,0 chr1 41810 . G A . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:27,27:0,0 42:0:0:0:7,7:0,0:35,35:0,0 chr1 41847 . T C . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:1,1:0,0:0,0:30,30 46:0:0:0:0,0:3,3:0,0:43,43 chr1 41866 . G T . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:25,25:5,5 45:0:0:0:1,1:0,0:44,44:0,0 chr1 41870 . A T . PASS NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:29,29:0,0:0,0:0,0 43:0:0:0:38,38:0,0:0,0:5,5 chr1 41905 . T C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:3,3:0,0:28,28 45:0:0:0:0,0:0,0:5,5:40,40 chr1 41966 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:1,1:0,0:31,31:0,0 50:0:0:0:0,0:0,0:50,50:0,0 chr1 42025 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:0,0:29,29 42:0:0:0:0,0:2,2:0,0:40,40 chr1 42038 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:28,28:0,0:0,0 40:0:0:0:3,3:37,37:0,0:0,0 chr1 42190 . G A,T . QSS_ref NT=het;QSS=106;QSS_NT=47;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:4,4:0,0:19,19:0,0 45:0:0:0:0,0:0,0:41,41:4,4 chr1 42228 . C G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:22,22:0,0:0,0 46:0:0:0:0,0:45,45:1,1:0,0 chr1 42230 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:0,0:4,4:18,18 41:0:0:0:0,0:0,0:3,3:38,38 chr1 42288 . G A . PASS NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:25,25:0,0 51:0:0:0:5,5:0,0:46,46:0,0 chr1 42308 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:24,24:0,0:3,3:0,0 50:0:0:0:42,42:0,0:8,8:0,0 chr1 42346 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:4,4:24,24:0,0:0,0 46:0:0:0:7,7:39,39:0,0:0,0 chr1 42425 . A C,G . QSS_ref NT=het;QSS=81;QSS_NT=17;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:33,33:4,4:0,0:0,0 45:0:0:0:41,41:0,0:4,4:0,0 chr1 42440 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:37,37:0,0:0,0:0,0 46:0:0:0:41,41:5,5:0,0:0,0 chr1 42479 . T A,C . QSS_ref NT=het;QSS=42;QSS_NT=18;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:3,3:0,0:33,33 45:0:0:0:6,6:0,0:0,0:39,39 chr1 42526 . G A,T . QSS_ref NT=het;QSS=64;QSS_NT=39;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:4,4:0,0:23,23:0,0 44:0:0:0:0,0:0,0:41,41:3,3 chr1 42545 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:0,0:28,28 41:0:0:0:0,0:0,0:2,2:39,39 chr1 42687 . A G . BCNoise;QSS_ref NT=ref;QSS=12;QSS_NT=12;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:7:0:0:14,15:0,0:0,0:0,0 44:19:0:0:21,24:0,0:4,4:0,0 chr1 42849 . A C . PASS NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:33,33:0,0:0,0:1,1 37:0:0:0:35,35:2,2:0,0:0,0 chr1 42863 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:32,32:0,0:0,0:1,1 39:0:0:0:38,38:0,0:1,1:0,0 chr1 42875 . A C,T . QSS_ref NT=het;QSS=94;QSS_NT=32;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:29,29:4,4:0,0:0,0 39:0:0:0:34,34:0,0:0,0:5,5 chr1 42932 . C A,T . QSS_ref NT=het;QSS=89;QSS_NT=34;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:0,0:32,32:0,0:7,7 53:0:0:0:4,4:49,49:0,0:0,0 chr1 42968 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:3:0:0:0,0:0,0:0,0:35,35 46:8:0:0:1,1:0,0:0,0:37,37 chr1 42986 . T C,G . QSS_ref NT=het;QSS=166;QSS_NT=43;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:3:0:0:0,0:0,0:5,5:26,26 47:13:0:0:0,0:6,6:0,0:28,28 chr1 43102 . G A,C . QSS_ref NT=het;QSS=162;QSS_NT=61;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:4:0:0:6,6:0,0:20,20:0,0 54:7:0:0:0,0:5,5:42,42:0,0 chr1 43266 . T A . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:9:0:0:0,0:0,0:0,0:29,31 47:13:0:0:4,4:0,0:0,0:30,33 chr1 43287 . G A . QSS_ref;BCNoise NT=ref;QSS=2;QSS_NT=2;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:15:0:0:1,1:0,0:19,19:0,0 46:26:0:0:0,1:0,0:20,20:0,0 chr1 43315 . C G . QSS_ref NT=ref;QSS=6;QSS_NT=6;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:6:0:0:0,0:28,28:0,0:0,0 46:15:0:0:0,0:30,31:1,1:0,0 chr1 43387 . T A . QSS_ref NT=het;QSS=2;QSS_NT=1;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:2,2:0,0:35,35 62:0:0:0:4,4:0,0:0,0:58,58 chr1 43412 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:1,1:0,0:0,0:33,33 64:0:0:0:6,6:0,0:0,0:58,58 chr1 43431 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:23,23:8,8:0,0:0,0 63:0:0:0:53,53:0,0:10,10:0,0 chr1 43525 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:4,4:0,0:0,0:34,34 46:0:0:0:0,0:0,0:4,4:42,42 chr1 43597 . A G,T . QSS_ref NT=het;QSS=4;QSS_NT=4;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:27,27:0,0:2,2:0,0 49:0:0:0:45,45:0,0:0,0:4,4 chr1 43628 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:4,4:23,23:0,0:0,0 46:0:0:0:0,0:46,46:0,0:0,0 chr1 43648 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:0,0:28,28 48:0:0:0:0,0:7,7:0,0:41,41 chr1 43737 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:2,2:0,0:27,27:0,0 59:0:0:0:0,0:0,0:54,54:5,5 chr1 43774 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:1:0:0:5,5:0,0:0,0:19,19 54:2:0:0:0,0:11,11:0,0:41,41 chr1 43814 . A G,T . QSS_ref NT=het;QSS=246;QSS_NT=62;SGT=AT->AG;SOMATIC;TQSS=2;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:7:0:0:16,16:0,0:0,0:7,7 46:9:0:0:30,32:0,0:7,7:0,0 chr1 43884 . T G . QSS_ref NT=ref;QSS=6;QSS_NT=6;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:6:0:0:0,0:0,0:0,0:29,29 53:15:0:0:0,0:0,0:2,2:36,36 chr1 43938 . C G . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:3:0:0:0,0:29,29:0,0:0,0 48:0:0:0:0,0:46,46:2,2:0,0 chr1 43969 . C T . PASS NT=ref;QSS=23;QSS_NT=23;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:1:0:0:1,1:32,32:0,0:0,0 43:4:0:0:0,0:34,34:0,0:5,5 chr1 44052 . G C . BCNoise;QSS_ref NT=ref;QSS=13;QSS_NT=13;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:17:0:0:0,0:0,0:19,19:0,0 53:31:0:0:0,0:1,2:21,21:0,0 chr1 44131 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:1:0:0:29,29:2,2:0,0:0,0 45:3:0:0:38,38:4,4:0,0:0,0 chr1 44189 . G A,C . QSS_ref NT=het;QSS=124;QSS_NT=47;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:2:0:0:4,4:0,0:25,25:0,0 63:12:0:0:0,0:9,9:42,42:0,0 chr1 44414 . G C . PASS NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:4:0:0:0,0:0,0:24,24:0,0 51:7:0:0:0,0:6,6:38,38:0,0 chr1 44487 . C A,T . QSS_ref NT=het;QSS=10;QSS_NT=10;SGT=AC->CT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:5:0:0:3,3:23,24:0,0:0,0 60:23:0:0:0,0:35,37:0,0:2,2 chr1 44534 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:2:0:0:3,3:0,0:0,0:31,31 61:7:0:0:0,0:0,0:1,1:53,53 chr1 44590 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:1,1:28,28:0,0 47:0:0:0:3,3:0,0:44,44:0,0 chr1 44606 . C A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:31,31:0,0:0,0 45:0:0:0:1,1:44,44:0,0:0,0 chr1 44665 . G A . PASS NT=ref;QSS=19;QSS_NT=19;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:35,35:0,0 43:0:0:0:3,3:0,0:40,40:0,0 chr1 44713 . T G . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:0,0:0,0:0,0:42,42 54:0:0:0:0,0:0,0:2,2:52,52 chr1 44782 . G A,T . QSS_ref NT=het;QSS=346;QSS_NT=54;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:0,0:0,0:29,29:10,10 51:0:0:0:9,9:0,0:42,42:0,0 chr1 44844 . T A,C . QSS_ref NT=het;QSS=144;QSS_NT=35;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:5,5:0,0:0,0:27,27 50:0:0:0:0,0:6,6:0,0:44,44 chr1 44956 . T C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:3,3:23,23 47:0:0:0:0,0:3,3:0,0:44,44 chr1 44982 . A T . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:27,27:0,0:0,0:0,0 46:0:0:0:42,42:0,0:0,0:4,4 chr1 45004 . G A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:4,4:0,0:27,27:0,0 45:0:0:0:0,0:6,6:39,39:0,0 chr1 45073 . G A,T . QSS_ref NT=het;QSS=126;QSS_NT=40;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:28,28:5,5 48:0:0:0:11,11:0,0:37,37:0,0 chr1 45115 . C A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:28,28:0,0:0,0 49:0:0:0:2,2:47,47:0,0:0,0 chr1 45127 . C T . QSS_ref NT=het;QSS=3;QSS_NT=3;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:2,2:25,25:0,0:0,0 50:0:0:0:0,0:45,45:0,0:5,5 chr1 45174 . C T . PASS NT=ref;QSS=31;QSS_NT=31;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:32,32:0,0:0,0 52:0:0:0:0,0:40,40:0,0:12,12 chr1 45246 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:3,3:29,29 60:0:0:0:0,0:0,0:1,1:59,59 chr1 45391 . G C,T . QSS_ref NT=het;QSS=47;QSS_NT=34;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:26,26:3,3 49:0:0:0:0,0:3,3:46,46:0,0 chr1 45414 . G T . PASS NT=ref;QSS=21;QSS_NT=21;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:24,24:0,0 54:0:0:0:0,0:0,0:43,43:11,11 chr1 45466 . A G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:24,24:0,0:3,3:0,0 53:0:0:0:51,51:0,0:0,0:2,2 chr1 45550 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:23,23:0,0:4,4:0,0 67:0:0:0:58,58:9,9:0,0:0,0 chr1 45673 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:1,1:22,24 46:0:0:0:0,0:0,0:0,0:46,46 chr1 45678 . A C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:23,25:0,0:0,0:0,0 46:0:0:0:42,42:4,4:0,0:0,0 chr1 45738 . G A,C . QSS_ref NT=het;QSS=105;QSS_NT=41;SGT=CG->AG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:4,4:21,22:0,0 40:0:0:0:8,8:0,0:32,32:0,0 chr1 45777 . T C,G . QSS_ref NT=het;QSS=93;QSS_NT=23;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:4,4:0,0:30,30 42:0:0:0:0,0:0,0:5,5:37,37 chr1 45828 . A C,T . QSS_ref NT=het;QSS=21;QSS_NT=21;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:5:0:0:27,27:5,5:0,0:0,0 59:14:0:0:43,43:0,0:0,0:2,2 chr1 45843 . A . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AA->AA;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:5:0:0:31,31:0,0:1,1:0,0 67:20:0:0:45,45:0,0:0,0:2,2 chr1 45849 . C A,T . QSS_ref NT=het;QSS=6;QSS_NT=6;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:6:0:0:2,2:27,27:0,0:0,0 64:20:0:0:0,0:42,42:0,0:2,2 chr1 45872 . C A,T . QSS_ref;BCNoise NT=het;QSS=39;QSS_NT=37;SGT=AC->CT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:16:0:0:3,3:12,19:0,0:0,0 61:31:0:0:0,0:27,30:0,0:3,5 chr1 45972 . T A,G . QSS_ref NT=het;QSS=143;QSS_NT=59;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:3:0:0:0,0:0,0:4,4:18,18 46:4:0:0:11,11:0,0:0,0:31,31 chr1 46008 . G T . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:2:0:0:0,0:1,1:23,23:0,0 38:8:0:0:0,0:0,0:27,27:3,3 chr1 46035 . G C . BCNoise;QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:13:0:0:0,0:0,0:11,17:0,0 35:23:0:0:0,0:2,2:10,20:0,0 chr1 46118 . T C,G . QSS_ref NT=het;QSS=125;QSS_NT=56;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:3:0:0:0,0:5,5:0,0:22,22 44:3:0:0:0,0:0,0:11,11:30,30 chr1 46239 . A G . QSS_ref NT=ref;QSS=8;QSS_NT=8;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 16:5:0:0:11,13:0,0:0,0:0,0 52:9:0:0:41,42:0,0:2,2:0,0 chr1 46302 . G T . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:1:0:0:0,0:0,0:29,29:0,0 48:14:0:0:0,0:0,0:31,31:3,3 chr1 46407 . G T . QSS_ref NT=ref;QSS=7;QSS_NT=7;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:8:0:0:1,1:0,0:27,27:0,0 37:13:0:0:0,0:0,0:22,22:2,2 chr1 46412 . G A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:10:0:0:3,3:0,0:22,22:0,0 37:13:0:0:0,0:3,3:21,21:0,0 chr1 46488 . C A,T . QSS_ref NT=het;QSS=76;QSS_NT=56;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:7:0:0:7,7:20,20:0,0:0,0 41:2:0:0:0,0:36,36:0,0:3,3 chr1 46508 . T G . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:5:0:0:0,0:0,0:0,0:29,29 46:2:0:0:0,0:0,0:3,3:41,41 chr1 46573 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:0,0:23,23 45:0:0:0:0,0:1,1:0,0:44,44 chr1 46581 . A T . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:24,24:0,0:0,0:0,0 46:0:0:0:40,40:0,0:0,0:6,6 chr1 46636 . T A,G . QSS_ref NT=het;QSS=424;QSS_NT=65;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:10,10:21,21 43:0:0:0:11,11:0,0:0,0:32,32 chr1 46756 . T A . QSS_ref NT=het;QSS=3;QSS_NT=3;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:2,2:0,0:23,23 41:0:0:0:5,5:0,0:0,0:36,36 chr1 46812 . G A,C . QSS_ref NT=het;QSS=134;QSS_NT=41;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:4,4:0,0:22,22:0,0 42:0:0:0:0,0:14,14:28,28:0,0 chr1 46898 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:28,28:0,0 38:0:0:0:2,2:0,0:36,36:0,0 chr1 46931 . A T . QSS_ref NT=ref;QSS=7;QSS_NT=5;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:33,33:0,0:2,2:0,0 41:0:0:0:36,36:0,0:0,0:5,5 chr1 47046 . G A,T . QSS_ref NT=het;QSS=43;QSS_NT=30;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:3,3:0,0:24,24:0,0 51:0:0:0:0,0:0,0:46,46:5,5 chr1 47086 . C G,T . QSS_ref NT=het;QSS=12;QSS_NT=12;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:20,20:2,2:0,0 51:0:0:0:0,0:47,47:0,0:4,4 chr1 47143 . C A,G . QSS_ref NT=het;QSS=90;QSS_NT=43;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:4,4:24,24:0,0:0,0 54:0:0:0:0,0:48,48:6,6:0,0 chr1 47175 . T A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:1,1:27,27 44:0:0:0:3,3:0,0:0,0:41,41 chr1 47293 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:11,11:0,0:0,0:20,20 61:0:0:0:7,7:0,0:0,0:54,54 chr1 47334 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:18,18:3,3:0,0 55:0:0:0:0,0:52,52:3,3:0,0 chr1 47377 . G A . QSS_ref NT=ref;QSS=12;QSS_NT=12;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:0,0:21,21:0,0 50:0:0:0:2,2:0,0:48,48:0,0 chr1 47383 . C A,T . QSS_ref NT=het;QSS=67;QSS_NT=43;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:19,19:0,0:3,3 51:0:0:0:4,4:47,47:0,0:0,0 chr1 47430 . A G,T . QSS_ref NT=het;QSS=6;QSS_NT=5;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:33,33:0,0:2,2:0,0 46:0:0:0:42,42:0,0:0,0:4,4 chr1 47555 . T A,G . QSS_ref NT=het;QSS=17;QSS_NT=16;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:2,2:0,0:0,0:28,28 56:0:0:0:0,0:0,0:7,7:49,49 chr1 47623 . A C,G . QSS_ref NT=het;QSS=358;QSS_NT=54;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:27,27:9,9:0,0:0,0 63:0:0:0:49,49:0,0:14,14:0,0 chr1 47700 . G A,C . QSS_ref NT=het;QSS=162;QSS_NT=52;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:7,7:22,22:0,0 46:0:0:0:10,10:0,0:36,36:0,0 chr1 47807 . G T . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:23,23:0,0 49:0:0:0:0,0:0,0:44,44:5,5 chr1 47872 . G A,C . QSS_ref NT=het;QSS=287;QSS_NT=67;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:7,7:0,0:13,13:0,0 65:0:0:0:0,0:16,16:49,49:0,0 chr1 47959 . G C,T . QSS_ref NT=het;QSS=274;QSS_NT=47;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:25,25:7,7 49:0:0:0:0,0:14,14:35,35:0,0 chr1 48012 . T C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:3,3:0,0:24,24 48:0:0:0:0,0:0,0:3,3:45,45 chr1 48031 . A C . PASS NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:30,30:0,0:0,0:0,0 50:0:0:0:48,48:2,2:0,0:0,0 chr1 48165 . C A,T . QSS_ref NT=het;QSS=278;QSS_NT=54;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:8,8:23,23:0,0:0,0 55:0:0:0:0,0:47,47:0,0:8,8 chr1 48245 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:1,1:23,23:0,0:0,0 52:0:0:0:0,0:51,51:0,0:1,1 chr1 48277 . T A . PASS NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:0,0:0,0:21,21 49:0:0:0:9,9:0,0:0,0:40,40 chr1 48303 . T A,G . QSS_ref NT=het;QSS=352;QSS_NT=68;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:9,9:0,0:0,0:14,14 40:0:0:0:0,0:0,0:15,15:25,25 chr1 48482 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:11:0:0:21,21:2,2:0,0:0,0 55:18:0:0:28,32:0,0:0,0:9,9 chr1 48653 . T G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:1,1:0,0:0,0:21,21 52:0:0:0:0,0:0,0:4,4:48,48 chr1 48704 . G A,C . QSS_ref NT=het;QSS=41;QSS_NT=29;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:3,3:0,0:28,28:0,0 51:0:0:0:0,0:3,3:48,48:0,0 chr1 48899 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:1,1:33,33 48:0:0:0:0,0:1,1:0,0:47,47 chr1 48923 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:23,23:0,0:5,5:0,0 55:0:0:0:50,50:0,0:5,5:0,0 chr1 48975 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:29,29:0,0:0,0:3,3 55:0:0:0:53,53:0,0:0,0:2,2 chr1 49005 . G T . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:25,25:0,0 50:0:0:0:0,0:0,0:49,49:1,1 chr1 49018 . G C,T . QSS_ref NT=het;QSS=158;QSS_NT=54;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:5,5:20,20:0,0 48:0:0:0:0,0:0,0:38,38:10,10 chr1 49088 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:18,18:5,5 54:0:0:0:0,0:0,0:44,44:10,10 chr1 49150 . G A,T . QSS_ref NT=het;QSS=20;QSS_NT=20;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:2,2:0,0:21,21:0,0 63:0:0:0:0,0:0,0:58,58:5,5 chr1 49181 . C A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:1,1:26,26:0,0:0,0 62:0:0:0:0,0:62,62:0,0:0,0 chr1 49199 . G T . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:1:0:0:0,0:1,1:23,23:0,0 61:2:0:0:0,0:0,0:53,53:6,6 chr1 49263 . C A,G . QSS_ref NT=het;QSS=56;QSS_NT=40;SGT=CG->AC;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:7:0:0:0,0:19,20:3,3:0,0 42:16:0:0:3,3:23,23:0,0:0,0 chr1 49330 . T A,C . QSS_ref NT=het;QSS=261;QSS_NT=59;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:1:0:0:10,10:0,0:0,0:20,20 39:5:0:0:0,0:7,7:0,0:27,27 chr1 49413 . T C . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:0,0:29,29 52:0:0:0:0,0:10,10:0,0:42,42 chr1 49467 . T G . QSS_ref NT=het;QSS=2;QSS_NT=2;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:2,2:0,0:0,0:27,27 65:0:0:0:0,0:0,0:3,3:62,62 chr1 49482 . C G . QSS_ref NT=het;QSS=2;QSS_NT=2;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:26,26:0,0:2,2 65:0:0:0:0,0:60,60:5,5:0,0 chr1 49535 . G C,T . QSS_ref NT=het;QSS=128;QSS_NT=48;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:4,4:22,22:0,0 56:0:0:0:0,0:0,0:51,51:5,5 chr1 49576 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:1,1:0,0:24,24 50:0:0:0:0,0:5,5:0,0:45,45 chr1 49598 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:29,29:0,0:0,0:1,1 41:0:0:0:39,39:0,0:0,0:2,2 chr1 49638 . A T . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:25,25:0,0:1,1:0,0 43:0:0:0:42,42:0,0:0,0:1,1 chr1 49731 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:3,3:0,0:25,25 60:0:0:0:0,0:5,5:0,0:55,55 chr1 49770 . G T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:1,1:0,0:30,30:0,0 58:0:0:0:0,0:0,0:56,56:2,2 chr1 49790 . T A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:0,0:30,30 53:0:0:0:4,4:0,0:0,0:49,49 chr1 49815 . A T . QSS_ref NT=ref;QSS=21;QSS_NT=3;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:38,38:2,2:0,0:0,0 60:0:0:0:55,55:0,0:0,0:5,5 chr1 49841 . C A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:1:0:0:5,5:31,31:0,0:0,0 58:5:0:0:0,0:45,45:8,8:0,0 chr1 49888 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:6:0:0:0,0:26,26:0,0:2,2 51:9:0:0:3,3:39,39:0,0:0,0 chr1 49909 . T A,G . QSS_ref NT=het;QSS=34;QSS_NT=34;SGT=GT->AT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:8:0:0:0,0:0,0:4,4:14,14 42:14:0:0:2,2:0,0:0,0:26,29 chr1 49929 . A G . BCNoise;QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:14:0:0:9,9:0,0:0,0:0,0 49:23:0:0:23,23:0,0:3,3:0,0 chr1 49983 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:4:0:0:1,1:0,0:23,23:0,0 66:7:0:0:0,0:0,0:59,59:0,0 chr1 49989 . A C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:2:0:0:25,25:0,0:0,0:0,0 69:6:0:0:62,62:1,1:0,0:0,0 chr1 50010 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:1:0:0:21,21:3,3:0,0:0,0 69:3:0:0:64,64:2,2:0,0:0,0 chr1 50053 . G C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:4,4:26,26:0,0 71:0:0:0:0,0:0,0:64,64:7,7 chr1 50105 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:1,1:36,36:0,0:0,0 64:0:0:0:0,0:63,66:0,0:1,1 chr1 50124 . G C . QSS_ref NT=ref;QSS=4;QSS_NT=1;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:0,0:36,36:2,2 56:0:0:0:0,0:4,4:52,58:0,0 chr1 50150 . T A,G . QSS_ref NT=het;QSS=327;QSS_NT=64;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:12,12:0,0:0,0:22,22 56:0:0:0:0,0:0,0:8,8:48,55 chr1 50562 . C T . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:23,23:0,0:13,13 39:0:0:0:0,0:39,59:0,0:0,0 chr1 50722 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:28,28:0,0:2,2 58:0:0:0:0,0:58,59:0,0:0,0 chr1 50875 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:26,26:0,0:1,1:0,0 56:0:0:0:56,56:0,0:0,0:0,0 chr1 51006 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:6,6:0,0:0,0:28,28 54:0:0:0:0,0:0,0:0,0:54,54 chr1 51200 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:0,0:0,0:4,4:35,35 58:0:0:0:0,0:0,0:0,0:58,58 chr1 51231 . G T . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:22,22:10,10 53:0:0:0:0,0:0,0:53,53:0,0 chr1 51333 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:23,23:0,0:0,0:6,6 52:0:0:0:52,52:0,0:0,0:0,0 chr1 51643 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:3,3:0,0:0,0:32,32 58:0:0:0:0,0:0,0:0,0:58,58 chr1 51690 . T A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:1,1:0,0:0,0:39,39 46:0:0:0:0,0:0,0:0,0:46,46 chr1 51723 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:4,4:25,25 43:0:0:0:0,0:0,0:0,0:43,43 chr1 52014 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:0,0:36,36:0,0:4,4 59:0:0:0:0,0:59,61:0,0:0,0 chr1 52087 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:24,24:0,0:0,0:3,3 58:0:0:0:58,58:0,0:0,0:0,0 chr1 52134 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:1,1:27,27:0,0:0,0 53:0:0:0:0,0:53,53:0,0:0,0 chr1 52190 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:1,1:0,0:36,36 71:0:0:0:0,0:0,0:0,0:71,71 chr1 52423 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:29,29:2,2:0,0:0,0 66:0:0:0:66,66:0,0:0,0:0,0 chr1 52481 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:0,0:40,40:0,0:1,1 46:0:0:0:0,0:46,46:0,0:0,0 chr1 52540 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:16,16:0,0:24,24:0,0 45:0:0:0:0,0:0,0:45,45:0,0 chr1 53089 . T C . QSS_ref NT=het;QSS=29;QSS_NT=29;SGT=CT->TT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:11,11:0,0:16,16 60:0:0:0:0,0:0,0:0,0:60,60 chr1 53331 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:2,2:29,29 63:0:0:0:0,0:0,0:0,0:63,63 chr1 53390 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:0,0:36,36:0,0:4,4 69:0:0:0:0,0:69,69:0,0:0,0 chr1 53543 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:1,1:24,24:0,0 51:0:0:0:0,0:0,0:51,51:0,0 chr1 53596 . T A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:1,1:0,0:0,0:22,22 56:0:0:0:0,0:0,0:0,0:56,56 chr1 53727 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:25,25:10,10 47:0:0:0:0,0:0,0:47,47:0,0 chr1 53851 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:5,5:0,0:26,26 59:0:0:0:0,0:0,0:0,0:59,59 chr1 53892 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:30,30:0,0:2,2:0,0 60:0:0:0:60,60:0,0:0,0:0,0 chr1 53941 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:35,35:1,1:0,0:0,0 68:0:0:0:68,68:0,0:0,0:0,0 chr1 54082 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:4,4:0,0:28,28 50:0:0:0:0,0:0,0:0,0:50,53 chr1 54206 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:0,0:33,33:0,0:8,8 32:0:0:0:0,0:32,57:0,0:0,0 chr1 54839 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:23,23:0,0:5,5 64:0:0:0:2,2:62,62:0,0:0,0 chr1 54981 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:29,29:0,0:1,1 39:0:0:0:0,0:38,38:1,1:0,0 chr1 55074 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:7:0:0:7,7:0,0:0,0:27,28 62:20:0:0:0,0:7,7:0,0:35,39 chr1 55109 . A T . BCNoise;QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:15:0:0:17,19:0,0:0,0:0,0 61:38:0:0:22,22:0,0:0,0:1,1 chr1 55146 . A C,G . QSS_ref NT=het;QSS=81;QSS_NT=62;SGT=AG->AC;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:5:0:0:17,18:0,0:5,5:0,0 61:16:0:0:42,43:3,3:0,0:0,0 chr1 55206 . C G . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 18:0:0:0:1,1:17,17:0,0:0,0 57:1:0:0:0,0:53,53:3,3:0,0 chr1 55224 . G C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:5,5:18,18:0,0 54:0:0:0:0,0:0,0:47,47:7,7 chr1 55299 . T A . PASS NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:0,0:32,32 60:0:0:0:2,2:0,0:0,0:58,58 chr1 55318 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:21,21:6,6:0,0:0,0 63:0:0:0:58,58:5,5:0,0:0,0 chr1 55338 . G C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:30,30:0,0 63:0:0:0:0,0:7,7:56,56:0,0 chr1 55422 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:27,27:0,0 53:0:0:0:0,0:2,2:51,51:0,0 chr1 55472 . C A,T . QSS_ref NT=het;QSS=30;QSS_NT=30;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:4,4:20,20:0,0:0,0 46:0:0:0:0,0:44,44:0,0:2,2 chr1 55483 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:2:0:0:0,0:31,31:0,0:0,0 46:0:0:0:6,6:40,40:0,0:0,0 chr1 55549 . G A . PASS NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:10:0:0:0,0:0,0:30,30:0,0 48:6:0:0:3,3:0,0:39,39:0,0 chr1 55566 . G C,T . BCNoise;QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:15:0:0:0,0:0,0:21,22:3,3 50:25:0:0:0,0:3,3:22,23:0,1 chr1 55680 . T G . QSS_ref NT=ref;QSS=14;QSS_NT=13;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:1,1:0,0:0,0:24,24 54:0:0:0:0,0:0,0:3,3:51,51 chr1 55752 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:2,2:26,26:0,0 48:0:0:0:0,0:1,1:47,47:0,0 chr1 55812 . C G . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:1,1:30,30:0,0:0,0 41:0:0:0:0,0:40,40:1,1:0,0 chr1 56011 . T C . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:0,0:0,0:36,36 44:0:0:0:0,0:3,3:0,0:41,41 chr1 56061 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:0,0:9,9:0,0:32,32 51:0:0:0:9,9:0,0:0,0:42,42 chr1 56121 . C A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:37,37:0,0:0,0 47:0:0:0:13,13:34,34:0,0:0,0 chr1 56219 . C A,G . QSS_ref NT=het;QSS=78;QSS_NT=36;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:5:0:0:3,3:25,25:0,0:0,0 49:14:0:0:0,0:26,26:9,9:0,0 chr1 56307 . T A,C . BCNoise;QSS_ref NT=het;QSS=26;QSS_NT=26;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:6:0:0:4,4:0,0:0,0:19,19 41:17:0:0:0,0:2,2:0,0:22,22 chr1 56443 . C G . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:27,27:0,0:0,0 47:0:0:0:0,0:46,46:1,1:0,0 chr1 56489 . G A . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:0,0:35,35:1,1 42:0:0:0:3,3:0,0:39,39:0,0 chr1 56556 . C G . QSS_ref NT=ref;QSS=8;QSS_NT=8;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:0,0:39,39:0,0:1,1 50:0:0:0:0,0:49,49:1,1:0,0 chr1 56575 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:11,11:31,31:0,0:0,0 55:0:0:0:0,0:42,42:0,0:13,13 chr1 56667 . A T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:25,25:0,0:2,2:0,0 38:0:0:0:34,34:0,0:0,0:4,4 chr1 56684 . C G,T . QSS_ref NT=het;QSS=22;QSS_NT=22;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:21,21:3,3:0,0 38:0:0:0:0,0:36,36:0,0:2,2 chr1 56728 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:1,1:29,29 50:0:0:0:0,0:0,0:0,0:50,50 chr1 56739 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:2,2:0,0:0,0:28,28 51:0:0:0:0,0:0,0:6,6:45,45 chr1 56782 . T A,C . QSS_ref NT=het;QSS=59;QSS_NT=19;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:3,3:0,0:29,29 46:0:0:0:6,6:0,0:0,0:40,40 chr1 56803 . A T . PASS NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:29,29:0,0:0,0:0,0 51:0:0:0:48,48:0,0:0,0:3,3 chr1 56826 . G C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:27,27:3,3 44:0:0:0:0,0:5,5:39,39:0,0 chr1 56880 . T G . QSS_ref NT=het;QSS=14;QSS_NT=11;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:2,2:0,0:0,0:24,24 49:0:0:0:0,0:0,0:4,4:45,45 chr1 56901 . C A,T . QSS_ref NT=het;QSS=7;QSS_NT=7;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:2,2:20,20:0,0:0,0 44:0:0:0:0,0:40,40:0,0:4,4 chr1 56989 . G C,T . QSS_ref NT=het;QSS=258;QSS_NT=47;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:9,9:26,26:0,0 47:0:0:0:0,0:0,0:40,40:7,7 chr1 57021 . G C . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:0,0:36,36:0,0 55:0:0:0:0,0:10,10:45,45:0,0 chr1 57136 . T C . QSS_ref NT=ref;QSS=6;QSS_NT=6;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:0,0:35,35 40:0:0:0:0,0:1,1:0,0:39,39 chr1 57280 . C A,T . QSS_ref NT=het;QSS=227;QSS_NT=52;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:25,25:0,0:7,7 42:0:0:0:8,8:34,34:0,0:0,0 chr1 57481 . G A,C . QSS_ref NT=het;QSS=73;QSS_NT=23;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:4,4:31,31:0,0 53:0:0:0:6,6:0,0:47,47:0,0 chr1 57596 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:0,0:24,24:0,0:15,15 52:0:0:0:22,22:30,30:0,0:0,0 chr1 57675 . C A . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:32,32:0,0:0,0 54:0:0:0:3,3:51,51:0,0:0,0 chr1 57705 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:29,29:0,0 61:0:0:0:0,0:0,0:57,57:4,4 chr1 57728 . A C,T . QSS_ref NT=het;QSS=59;QSS_NT=26;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:26,26:0,0:0,0:3,3 61:0:0:0:57,57:4,4:0,0:0,0 chr1 57761 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:33,33:0,0:0,0:1,1 57:0:0:0:56,56:0,0:0,0:1,1 chr1 57830 . C A . PASS NT=ref;QSS=43;QSS_NT=43;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:33,33:0,0:0,0 52:0:0:0:16,16:36,36:0,0:0,0 chr1 57950 . G C,T . QSS_ref;BCNoise NT=het;QSS=3070;QSS_NT=3070;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:16:0:0:0,0:4,5:22,23:0,0 49:28:0:0:0,0:0,0:19,28:2,2 chr1 58098 . T C,G . QSS_ref NT=het;QSS=250;QSS_NT=64;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:0,0:14,14:0,0:26,26 41:0:0:0:0,0:0,0:6,6:35,35 chr1 58148 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:28,28:0,0:1,1:0,0 52:0:0:0:52,52:0,0:0,0:0,0 chr1 58164 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:0,0:23,23 61:0:0:0:0,0:0,0:2,2:59,59 chr1 58269 . A G,T . QSS_ref NT=het;QSS=85;QSS_NT=36;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:34,34:0,0:0,0:7,7 50:0:0:0:46,46:0,0:4,4:0,0 chr1 58284 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:3,3:29,29 50:0:0:0:0,0:0,0:6,6:44,44 chr1 58317 . A T . QSS_ref NT=het;QSS=2;QSS_NT=2;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:24,24:2,2:0,0:0,0 50:0:0:0:45,45:0,0:0,0:5,5 chr1 58497 . T A,C . QSS_ref NT=het;QSS=180;QSS_NT=45;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:6,6:0,0:0,0:24,24 48:0:0:0:0,0:16,16:0,0:32,32 chr1 58567 . T A . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:0,0:35,35 48:0:0:0:1,1:0,0:0,0:47,47 chr1 58675 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:3,3:0,0:30,30 46:0:0:0:0,0:0,0:0,0:46,46 chr1 58685 . A T . QSS_ref NT=ref;QSS=6;QSS_NT=6;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:36,36:0,0:0,0:0,0 46:0:0:0:45,45:0,0:0,0:1,1 chr1 58693 . C G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:38,38:0,0:0,0 46:0:0:0:0,0:45,45:1,1:0,0 chr1 58694 . C A,G . QSS_ref NT=het;QSS=91;QSS_NT=14;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:34,34:4,4:0,0 46:0:0:0:5,5:41,41:0,0:0,0 chr1 58717 . C G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:0,0:29,29:11,11:0,0 42:0:0:0:0,0:28,28:0,0:14,14 chr1 58828 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:1:0:0:37,37:0,0:0,0:0,0 47:2:0:0:43,43:2,2:0,0:0,0 chr1 58868 . A G,T . QSS_ref NT=het;QSS=74;QSS_NT=29;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:4:0:0:25,25:0,0:3,3:0,0 50:9:0:0:31,32:0,0:0,0:10,10 chr1 58898 . T A,G . QSS_ref;BCNoise NT=het;QSS=136;QSS_NT=47;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:14:0:0:5,5:0,0:0,0:17,21 49:30:0:0:0,0:0,0:5,7:14,27 chr1 58937 . G T . BCNoise NT=ref;QSS=34;QSS_NT=34;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 43:15:0:0:0,0:0,0:28,34:0,0 47:26:0:0:0,0:0,0:16,23:5,9 chr1 58998 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 43:4:0:0:37,37:2,2:0,0:0,0 34:1:0:0:13,13:0,0:20,20:0,0 chr1 59065 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:26,26:0,0:5,5 30:0:0:0:0,0:30,30:0,0:0,0 chr1 59099 . T G . QSS_ref NT=ref;QSS=8;QSS_NT=8;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:0,0:25,25 34:0:0:0:0,0:0,0:1,1:33,33 chr1 59210 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:3,3:37,37:0,0:0,0 42:0:0:0:0,0:42,43:0,0:0,0 chr1 59316 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:26,26:0,0:0,0:10,10 9:0:0:0:9,17:0,0:0,0:0,0 chr1 59719 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:2,2:0,0:28,28 18:0:0:0:0,0:0,0:0,0:18,25 chr1 59765 . C T . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 43:0:0:0:0,0:27,27:0,0:16,16 24:0:0:0:0,0:24,29:0,0:0,0 chr1 60071 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:1,1:22,22 26:0:0:0:0,0:0,0:0,0:26,27 chr1 60183 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:22,22:3,3 32:0:0:0:0,0:0,0:32,34:0,0 chr1 60241 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:26,26:6,6 22:0:0:0:0,0:0,0:22,24:0,0 chr1 60388 . G C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:1,1:31,31:0,0 18:0:0:0:0,0:0,0:18,19:0,0 chr1 60519 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:0,0:0,0:38,38:1,1 25:0:0:0:0,0:0,0:25,29:0,0 chr1 61583 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:0,0:4,4:16,16:0,0 53:0:0:0:0,0:0,0:53,72:0,0 chr1 61706 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:27,27:0,0:4,4:0,0 76:0:0:0:76,83:0,0:0,0:0,0 chr1 61780 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:10,10:0,0:22,22 76:0:0:0:0,0:0,0:0,0:76,77 chr1 61920 . T G . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:0,0:1,1:21,21 38:0:0:0:0,0:0,0:0,0:38,42 chr1 62076 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:26,26:0,0:1,1:0,0 31:0:0:0:31,38:0,0:0,0:0,0 chr1 62079 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:23,23:0,0:4,4 33:0:0:0:0,0:33,40:0,0:0,0 chr1 62310 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 17:0:0:0:15,20:0,0:2,2:0,0 14:0:0:0:14,25:0,0:0,0:0,0 chr1 62327 . G A . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:0,0:21,26:0,0 13:0:0:0:2,3:0,0:11,20:0,0 chr1 62659 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:31,31:1,1:0,0 37:0:0:0:0,0:37,38:0,0:0,0 chr1 62745 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:9,9:20,20:0,0:0,0 47:0:0:0:0,0:47,47:0,0:0,0 chr1 63031 . C T . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:25,25:0,0:0,0 50:0:0:0:0,0:46,46:0,0:4,4 chr1 63060 . T C,G . QSS_ref NT=het;QSS=18;QSS_NT=18;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:1:0:0:0,0:8,8:0,0:20,20 61:11:0:0:0,0:0,0:1,1:49,49 chr1 63110 . G A . QSS_ref;BCNoise NT=ref;QSS=13;QSS_NT=13;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:10:0:0:0,0:0,0:22,31:0,0 58:31:0:0:1,1:0,0:26,34:0,0 chr1 63142 . A . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AA->AA;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:10:0:0:31,31:0,0:0,0:0,0 58:17:0:0:39,40:0,0:2,4:0,0 chr1 63161 . T A,C . QSS_ref NT=het;QSS=4;QSS_NT=4;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:9:0:0:0,0:7,7:0,0:21,21 44:10:0:0:1,1:0,0:0,0:33,33 chr1 63234 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:0,0:33,33 51:0:0:0:0,0:5,5:0,0:46,46 chr1 63263 . G A . PASS NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:33,33:1,1 48:0:0:0:2,2:0,0:46,46:0,0 chr1 63292 . T C,G . QSS_ref NT=het;QSS=38;QSS_NT=14;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:3:0:0:0,0:3,3:0,0:31,31 51:5:0:0:0,0:0,0:7,7:39,39 chr1 63411 . A T . PASS NT=ref;QSS=19;QSS_NT=19;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:6:0:0:27,27:0,0:0,0:0,0 57:12:0:0:38,38:0,0:0,0:7,7 chr1 63454 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:1:0:0:0,0:5,5:23,23:0,0 63:5:0:0:0,0:4,4:54,54:0,0 chr1 63511 . G T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:23,23:0,0 58:0:0:0:0,0:0,0:44,44:14,14 chr1 63580 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:32,32:0,0:0,0:0,0 53:0:0:0:48,48:0,0:5,5:0,0 chr1 63630 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:25,25:0,0:14,14:0,0 40:0:0:0:32,32:8,8:0,0:0,0 chr1 63742 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:6,6:28,28:0,0 53:0:0:0:0,0:7,7:46,46:0,0 chr1 63803 . A C . PASS NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:33,33:0,0:0,0:0,0 55:0:0:0:52,52:3,3:0,0:0,0 chr1 63814 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:31,31:0,0:7,7 61:0:0:0:6,6:55,55:0,0:0,0 chr1 63859 . T G . PASS NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:2:0:0:0,0:0,0:0,0:29,29 67:3:0:0:0,0:0,0:1,1:63,63 chr1 63863 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:3:0:0:30,30:1,1:0,0:0,0 67:3:0:0:60,60:0,0:4,4:0,0 chr1 63888 . C A,G . QSS_ref NT=het;QSS=383;QSS_NT=60;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:5:0:0:0,0:22,22:10,10:0,0 59:6:0:0:15,15:38,38:0,0:0,0 chr1 64013 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:24,24:0,0:1,1:0,0 49:2:0:0:46,46:0,0:0,0:1,1 chr1 64074 . T A . PASS NT=ref;QSS=21;QSS_NT=21;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:0,0:0,0:0,0:41,41 49:0:0:0:3,3:0,0:0,0:46,46 chr1 64181 . G A,T . QSS_ref NT=het;QSS=56;QSS_NT=48;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 19:0:0:0:0,0:0,0:16,16:3,3 57:0:0:0:7,7:0,0:50,50:0,0 chr1 64227 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:29,29:0,0:0,0 51:0:0:0:0,0:48,48:3,3:0,0 chr1 64240 . A T . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:31,31:0,0:0,0:0,0 48:0:0:0:41,41:0,0:0,0:7,7 chr1 64441 . T A,C . QSS_ref NT=het;QSS=18;QSS_NT=18;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:4:0:0:0,0:8,8:0,0:22,22 42:6:0:0:1,1:0,0:0,0:35,35 chr1 64458 . C T . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:4:0:0:0,0:29,29:0,0:0,0 46:9:0:0:0,0:29,29:0,0:8,8 chr1 64581 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:1:0:0:3,3:34,34:0,0:0,0 50:3:0:0:0,0:47,47:0,0:0,0 chr1 64634 . A G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:23,23:0,0:0,0:6,6 51:0:0:0:40,40:0,0:11,11:0,0 chr1 64751 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:8:0:0:20,20:1,1:0,0:0,0 36:13:0:0:23,23:0,0:0,0:0,0 chr1 64806 . C A,G . BCNoise;QSS_ref NT=het;QSS=174;QSS_NT=54;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:17:0:0:0,0:11,17:5,5:0,0 37:19:0:0:5,6:13,16:0,0:0,0 chr1 64897 . C A . PASS NT=ref;QSS=27;QSS_NT=27;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:6:0:0:0,0:30,30:0,0:0,0 43:5:0:0:13,13:25,25:0,0:0,0 chr1 65098 . T C . QSS_ref NT=ref;QSS=27;QSS_NT=14;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:2,2:31,31 52:0:0:0:0,0:10,10:0,0:42,42 chr1 65294 . T A,G . QSS_ref NT=het;QSS=14;QSS_NT=13;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:2,2:30,30 51:0:0:0:3,3:0,0:0,0:48,48 chr1 65309 . A C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:24,24:8,8:0,0:0,0 49:0:0:0:36,36:0,0:0,0:13,13 chr1 65409 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:32,32:2,2:0,0 64:0:0:0:0,0:62,62:0,0:2,2 chr1 65439 . T A,C . QSS_ref NT=het;QSS=83;QSS_NT=30;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:4,4:0,0:0,0:30,30 54:0:0:0:0,0:10,10:0,0:44,44 chr1 65476 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:27,27:0,0:3,3:0,0 51:0:0:0:43,43:8,8:0,0:0,0 chr1 65533 . C T . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:30,30:0,0:0,0 50:0:0:0:0,0:49,49:0,0:1,1 chr1 65567 . T A,C . QSS_ref NT=het;QSS=14;QSS_NT=10;SGT=CT->AT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:3,3:0,0:28,32 49:0:0:0:7,7:0,0:0,0:42,42 chr1 65629 . T A,C . QSS_ref NT=het;QSS=169;QSS_NT=52;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:7,7:0,0:0,0:21,25 50:0:0:0:0,0:5,5:0,0:45,45 chr1 65679 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:1:0:0:26,26:0,0:0,0:0,0 50:3:0:0:39,39:8,8:0,0:0,0 chr1 65720 . C G,T . QSS_ref NT=het;QSS=27;QSS_NT=27;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:6:0:0:0,0:18,18:5,5:0,0 48:8:0:0:0,0:38,38:0,0:2,2 chr1 65739 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:9:0:0:0,0:0,0:0,0:25,25 51:13:0:0:0,0:0,0:12,12:26,28 chr1 65834 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:5:0:0:23,23:3,3:0,0:0,0 49:5:0:0:35,35:9,9:0,0:0,0 chr1 65932 . C T . QSS_ref NT=ref;QSS=14;QSS_NT=11;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:3:0:0:0,0:21,21:1,1:0,0 42:8:0:0:0,0:31,31:0,0:3,3 chr1 65955 . C A,G . QSS_ref NT=het;QSS=62;QSS_NT=55;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:4:0:0:0,0:16,16:5,5:0,0 37:11:0:0:3,3:23,23:0,0:0,0 chr1 66019 . T A,C . QSS_ref NT=het;QSS=103;QSS_NT=51;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:5:0:0:0,0:5,5:0,0:19,19 46:8:0:0:4,4:0,0:0,0:34,34 chr1 66071 . G A,C . QSS_ref NT=het;QSS=195;QSS_NT=56;SGT=AG->CG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:3:0:0:7,7:0,0:17,21:0,0 49:1:0:0:0,0:13,13:35,35:0,0 chr1 66143 . T G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 17:0:0:0:0,0:0,0:0,0:17,20 55:0:0:0:0,0:0,0:1,1:54,54 chr1 66206 . A G . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:24,24:0,0:0,0:0,0 42:0:0:0:40,40:0,0:2,2:0,0 chr1 66218 . A T . PASS NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:26,26:1,1:0,0:0,0 49:0:0:0:44,44:0,0:0,0:5,5 chr1 66283 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:21,21:4,4 45:0:0:0:0,0:0,0:45,45:0,0 chr1 66285 . T C . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:0,0:25,25 46:0:0:0:0,0:2,2:0,0:44,44 chr1 66293 . A T . QSS_ref NT=ref;QSS=13;QSS_NT=13;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:23,23:0,0:0,0:0,0 47:0:0:0:45,45:0,0:0,0:2,2 chr1 66326 . C T . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:29,29:0,0:0,0 43:0:0:0:0,0:40,40:0,0:3,3 chr1 66376 . C A . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:27,27:0,0:0,0 40:0:0:0:4,4:36,36:0,0:0,0 chr1 66412 . A G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:22,22:0,0:5,5:0,0 37:0:0:0:29,29:0,0:0,0:8,8 chr1 66510 . A G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:28,28:1,1:0,0:0,0 49:0:0:0:47,47:0,0:2,2:0,0 chr1 66548 . T A . PASS NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:0,0:30,30 53:0:0:0:3,3:0,0:0,0:50,50 chr1 66639 . T A,G . QSS_ref NT=het;QSS=163;QSS_NT=49;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:5,5:20,20 49:0:0:0:11,11:0,0:0,0:38,38 chr1 66823 . G A,C . QSS_ref NT=het;QSS=128;QSS_NT=39;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:5,5:25,25:0,0 46:0:0:0:8,8:0,0:38,38:0,0 chr1 66895 . G C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:22,22:2,2 42:0:0:0:0,0:2,2:40,40:0,0 chr1 66927 . C A,T . QSS_ref NT=het;QSS=56;QSS_NT=44;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:3,3:21,21:0,0:0,0 46:0:0:0:0,0:38,38:0,0:8,8 chr1 66962 . C . . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=CC->CC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:2,2:21,21:0,0:0,0 48:0:0:0:0,0:46,46:2,2:0,0 chr1 67005 . G C . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:29,29:0,0 56:0:0:0:0,0:1,1:55,55:0,0 chr1 67018 . C A,G . QSS_ref NT=het;QSS=58;QSS_NT=28;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:3,3:25,25:0,0:0,0 51:0:0:0:0,0:47,47:4,4:0,0 chr1 67063 . A G,T . QSS_ref NT=het;QSS=269;QSS_NT=52;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:24,24:0,0:8,8:0,0 47:0:0:0:31,31:0,0:0,0:16,16 chr1 67138 . T . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=TT->TT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:0,0:25,25 39:0:0:0:2,2:0,0:0,0:37,37 chr1 67175 . A C,T . QSS_ref NT=het;QSS=67;QSS_NT=34;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:26,26:0,0:0,0:3,3 52:0:0:0:46,46:6,6:0,0:0,0 chr1 67219 . C A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:5,5:26,26:0,0:0,0 63:0:0:0:0,0:60,60:3,3:0,0 chr1 67283 . C A,T . QSS_ref NT=het;QSS=110;QSS_NT=18;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:2:0:0:4,4:32,32:0,0:0,0 60:3:0:0:0,0:47,47:0,0:10,10 chr1 67309 . C G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:3:0:0:0,0:24,24:0,0:8,8 52:7:0:0:0,0:34,34:11,11:0,0 chr1 67388 . A T . BCNoise;QSS_ref NT=conflict;QSS=3070;QSS_NT=0;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:6:0:0:16,18:0,0:0,0:1,3 40:18:0:0:22,26:0,0:0,2:0,0 chr1 67413 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:2:0:0:0,0:0,0:24,24:0,0 41:10:0:0:0,0:3,3:28,28:0,0 chr1 67693 . G . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=GG->GG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:5:0:0:0,0:0,0:29,29:0,0 50:5:0:0:2,2:0,0:43,43:0,0 chr1 67714 . A C,G . QSS_ref NT=het;QSS=18;QSS_NT=17;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:1:0:0:26,26:2,2:0,0:0,0 48:2:0:0:43,43:0,0:3,3:0,0 chr1 67770 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:1,1:27,27 39:0:0:0:0,0:3,3:0,0:36,36 chr1 67791 . A G,T . QSS_ref NT=het;QSS=148;QSS_NT=49;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:23,23:0,0:5,5:0,0 37:0:0:0:28,28:0,0:0,0:9,9 chr1 67850 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:0,0:5,5:33,33 32:0:0:0:3,3:0,0:0,0:29,29 chr1 67936 . T C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:7,7:25,25 46:0:0:0:0,0:8,8:0,0:38,38 chr1 68038 . T A . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:0,0:32,32 43:0:0:0:2,2:0,0:0,0:41,41 chr1 68093 . A G,T . QSS_ref NT=het;QSS=26;QSS_NT=16;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:30,30:0,0:3,3:0,0 50:0:0:0:46,46:0,0:0,0:4,4 chr1 68118 . A G,T . QSS_ref NT=het;QSS=34;QSS_NT=8;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:34,34:0,0:0,0:3,3 43:0:0:0:40,40:0,0:3,3:0,0 chr1 68185 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 44:0:0:0:0,0:0,0:5,5:39,39 48:0:0:0:0,0:1,1:0,0:47,47 chr1 68285 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:35,35:0,0:1,1 52:0:0:0:0,0:52,52:0,0:0,0 chr1 68325 . G A . PASS NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:37,37:0,0 55:0:0:0:4,4:0,0:51,51:0,0 chr1 68342 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:3,3:0,0:0,0:32,32 46:0:0:0:0,0:0,0:2,2:44,44 chr1 68402 . A C,G . QSS_ref NT=het;QSS=222;QSS_NT=50;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:26,26:7,7:0,0:0,0 54:0:0:0:39,39:0,0:15,15:0,0 chr1 68704 . C A,T . QSS_ref NT=het;QSS=397;QSS_NT=61;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:21,21:0,0:10,10 47:0:0:0:15,15:32,32:0,0:0,0 chr1 68856 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:37,37:0,0:0,0 54:0:0:0:0,0:49,49:0,0:5,5 chr1 68935 . G C,T . QSS_ref NT=het;QSS=400;QSS_NT=59;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:25,25:10,10 51:0:0:0:0,0:12,12:39,39:0,0 chr1 69074 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:1,1:30,30 48:0:0:0:0,0:0,0:0,0:48,48 chr1 69101 . C A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:1,1:27,27:0,0:0,0 48:0:0:0:0,0:48,48:0,0:0,0 chr1 69114 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:30,30:0,0:0,0 46:0:0:0:0,0:45,45:0,0:1,1 chr1 69220 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:3,3:0,0:0,0:17,17 60:0:0:0:0,0:5,5:0,0:55,55 chr1 69258 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:0,0:21,23:0,0 47:0:0:0:2,2:0,0:45,45:0,0 chr1 69298 . G C . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:1,1:0,0:23,26:0,0 49:0:0:0:0,0:7,7:42,42:0,0 chr1 69414 . C A,G . QSS_ref NT=het;QSS=213;QSS_NT=29;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:7,7:34,34:0,0:0,0 57:0:0:0:0,0:50,50:7,7:0,0 chr1 69493 . A C,T . QSS_ref NT=het;QSS=99;QSS_NT=27;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:32,32:4,4:0,0:0,0 63:0:0:0:58,58:0,0:0,0:5,5 chr1 69542 . A C . PASS NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:30,30:0,0:0,0:0,0 54:0:0:0:53,53:1,1:0,0:0,0 chr1 69558 . A G . PASS NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:30,30:0,0:0,0:0,0 47:0:0:0:45,45:0,0:2,2:0,0 chr1 69594 . A C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:27,27:1,1:0,0:0,0 50:0:0:0:50,50:0,0:0,0:0,0 chr1 69598 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:1:0:0:0,0:6,6:0,0:21,21 54:3:0:0:0,0:3,3:0,0:48,48 chr1 69663 . A C,G . QSS_ref NT=het;QSS=144;QSS_NT=54;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:3:0:0:18,18:0,0:4,4:0,0 55:15:0:0:30,31:10,10:0,0:0,0 chr1 69803 . T A,C . QSS_ref NT=het;QSS=72;QSS_NT=40;SGT=AT->CT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 19:0:0:0:3,3:0,0:0,0:16,20 51:0:0:0:0,0:4,4:0,0:47,47 chr1 69840 . C T . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 15:0:0:0:0,0:15,18:0,0:0,0 46:0:0:0:0,0:41,41:0,0:5,5 chr1 69864 . G A,T . QSS_ref NT=het;QSS=5;QSS_NT=5;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:2,2:0,0:18,18:0,0 43:0:0:0:0,0:0,0:41,41:2,2 chr1 70025 . A T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:29,29:0,0:0,0:1,1 47:0:0:0:47,47:0,0:0,0:0,0 chr1 70092 . C T . QSS_ref NT=ref;QSS=13;QSS_NT=13;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:23,23:0,0:0,0 46:0:0:0:0,0:43,43:0,0:3,3 chr1 70107 . G C,T . QSS_ref NT=het;QSS=68;QSS_NT=47;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:3,3:20,20:0,0 47:0:0:0:0,0:0,0:41,41:6,6 chr1 70239 . C A,G . QSS_ref NT=het;QSS=144;QSS_NT=46;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:6,6:24,24:0,0:0,0 58:0:0:0:0,0:53,53:5,5:0,0 chr1 70261 . G C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:0,0:22,22:0,0 55:0:0:0:0,0:2,2:53,53:0,0 chr1 70289 . A C,G . QSS_ref NT=het;QSS=329;QSS_NT=69;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:13,13:0,0:9,9:0,0 58:0:0:0:32,32:26,26:0,0:0,0 chr1 70401 . G C,T . QSS_ref NT=het;QSS=259;QSS_NT=56;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:7,7:20,20:0,0 63:0:0:0:0,0:0,0:49,49:14,14 chr1 70483 . G A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:6:0:0:0,0:3,3:19,19:0,0 57:7:0:0:6,6:0,0:44,44:0,0 chr1 70512 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:8:0:0:2,2:0,0:0,0:21,22 53:17:0:0:1,1:0,0:0,0:35,40 chr1 70535 . T A,G . BCNoise;QSS_ref NT=het;QSS=37;QSS_NT=36;SGT=AT->GT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:13:0:0:2,2:0,0:0,0:16,16 52:29:0:0:0,0:0,0:3,3:20,27 chr1 70544 . A C . QSS_ref;BCNoise NT=ref;QSS=4;QSS_NT=4;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:14:0:0:14,14:0,0:0,0:1,1 54:32:0:0:22,22:0,0:0,0:0,1 chr1 70545 . A T . BCNoise;QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:14:0:0:14,14:0,0:0,0:1,1 56:32:0:0:24,25:0,0:0,0:0,0 chr1 70560 . T A,G . BCNoise;QSS_ref NT=het;QSS=52;QSS_NT=52;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:10:0:0:0,0:0,0:7,9:9,10 53:25:0:0:2,5:0,0:0,0:26,30 chr1 70598 . C G . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:6:0:0:0,0:24,24:0,0:0,0 51:13:0:0:0,0:32,32:6,6:0,0 chr1 70655 . A C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:18,18:0,0:0,0:5,5 59:0:0:0:35,35:24,24:0,0:0,0 chr1 70735 . G A,C . QSS_ref NT=het;QSS=210;QSS_NT=57;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:6,6:20,20:0,0 48:0:0:0:14,14:0,0:34,34:0,0 chr1 70854 . G C,T . QSS_ref NT=het;QSS=103;QSS_NT=39;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:1:0:0:0,0:4,4:23,23:0,0 45:5:0:0:0,0:0,0:34,34:6,6 chr1 70945 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:6:0:0:0,0:12,12:3,3:0,0 43:8:0:0:0,0:35,39:0,0:0,0 chr1 70983 . G C . QSS_ref NT=het;QSS=2;QSS_NT=1;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:5:0:0:1,1:0,0:16,16:0,0 51:4:0:0:0,0:3,3:44,44:0,0 chr1 71001 . G C,T . QSS_ref NT=het;QSS=89;QSS_NT=51;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:3:0:0:0,0:0,0:15,15:3,3 48:2:0:0:0,0:9,9:37,37:0,0 chr1 71051 . T A,C . QSS_ref NT=het;QSS=167;QSS_NT=47;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:6,6:0,0:23,23 44:0:0:0:9,9:0,0:0,0:35,35 chr1 71150 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:23,23:6,6:0,0:0,0 44:0:0:0:39,39:0,0:5,5:0,0 chr1 71236 . A G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:1:0:0:24,24:0,0:0,0:1,1 42:1:0:0:39,39:0,0:2,2:0,0 chr1 71277 . C G,T . QSS_ref NT=het;QSS=86;QSS_NT=54;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:8:0:0:0,0:14,15:4,4:0,1 45:17:0:0:0,0:24,24:0,0:4,5 chr1 71309 . A C,T . QSS_ref NT=het;QSS=133;QSS_NT=56;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:4:0:0:14,14:4,4:0,0:0,0 55:10:0:0:31,31:0,0:0,0:14,14 chr1 71379 . G A,T . QSS_ref NT=het;QSS=288;QSS_NT=62;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:16,16:7,7 62:0:0:0:12,12:0,0:50,50:0,0 chr1 71443 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:0,0:25,25 56:0:0:0:0,0:1,1:0,0:55,55 chr1 71450 . T A . PASS NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:0,0:27,27 53:0:0:0:2,2:0,0:0,0:51,51 chr1 71469 . A G,T . QSS_ref NT=het;QSS=174;QSS_NT=46;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:22,22:0,0:5,5:0,0 47:1:0:0:35,35:0,0:0,0:11,11 chr1 71523 . C A,G . QSS_ref NT=het;QSS=145;QSS_NT=52;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:1:0:0:6,6:26,26:0,0:0,0 48:9:0:0:0,0:32,32:7,7:0,0 chr1 71740 . G A,T . QSS_ref NT=het;QSS=37;QSS_NT=32;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:3,3:0,0:23,23:0,0 58:0:0:0:0,0:0,0:52,52:6,6 chr1 71908 . C A,T . QSS_ref NT=het;QSS=204;QSS_NT=56;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:21,21:0,0:9,9 46:0:0:0:14,14:32,32:0,0:0,0 chr1 72054 . C A,T . QSS_ref NT=het;QSS=372;QSS_NT=55;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:24,24:0,0:9,9 58:0:0:0:14,14:44,44:0,0:0,0 chr1 72130 . T C,G . QSS_ref NT=het;QSS=88;QSS_NT=22;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:4,4:30,30 54:0:0:0:0,0:7,7:0,0:47,47 chr1 72161 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:1,1:0,0:28,28:0,0 53:0:0:0:3,3:0,0:50,50:0,0 chr1 72169 . C G,T . QSS_ref NT=het;QSS=152;QSS_NT=41;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:24,24:5,5:0,0 51:0:0:0:0,0:41,41:0,0:10,10 chr1 72226 . C G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:1,1:31,31:0,0:0,0 54:0:0:0:0,0:53,53:1,1:0,0 chr1 72327 . C G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 47:0:0:0:0,0:43,43:4,4:0,0 51:0:0:0:0,0:47,47:0,0:4,4 chr1 72440 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:28,28:0,0:0,0:0,0 49:0:0:0:45,45:0,0:4,4:0,0 chr1 72460 . T C,G . QSS_ref NT=het;QSS=15;QSS_NT=14;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:4,4:31,31 47:0:0:0:0,0:2,2:0,0:45,45 chr1 72492 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:5,5:30,30 58:0:0:0:0,0:0,0:2,2:56,56 chr1 72574 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:25,25:0,0 60:0:0:0:4,4:0,0:56,56:0,0 chr1 72614 . T C . PASS NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:0,0:28,28 57:0:0:0:0,0:3,3:0,0:54,54 chr1 72631 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:26,26:0,0:6,6 53:0:0:0:6,6:47,47:0,0:0,0 chr1 72667 . A G,T . QSS_ref NT=het;QSS=147;QSS_NT=47;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:23,23:0,0:0,0:6,6 49:0:0:0:41,41:0,0:8,8:0,0 chr1 72845 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:10,10:31,31:0,0:0,0 43:0:0:0:0,0:38,38:0,0:5,5 chr1 73035 . G A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:8,8:18,18:0,0 63:0:0:0:1,1:0,0:62,62:0,0 chr1 73060 . T C . PASS NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:0,0:28,28 51:0:0:0:0,0:5,5:0,0:46,46 chr1 73097 . A C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:24,24:0,0:0,0:0,0 48:0:0:0:47,47:1,1:0,0:0,0 chr1 73106 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:4,4:0,0:0,0:22,22 48:0:0:0:0,0:0,0:9,9:39,39 chr1 73183 . A G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:16,16:0,0:4,4:0,0 47:0:0:0:39,39:0,0:0,0:8,8 chr1 73271 . G C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:5,5:32,32:0,0 50:0:0:0:0,0:0,0:40,40:10,10 chr1 73342 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 43:0:0:0:35,35:0,0:8,8:0,0 61:0:0:0:49,49:0,0:12,12:0,0 chr1 73389 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:0,0:0,0:40,40:0,0 59:0:0:0:0,0:0,0:57,57:2,2 chr1 73440 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:21,21:0,0:12,12:0,0 58:0:0:0:43,43:15,15:0,0:0,0 chr1 73528 . C T . PASS NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:31,31:0,0:0,0 49:0:0:0:0,0:46,46:0,0:3,3 chr1 73625 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:1,1:0,0:0,0:22,22 47:0:0:0:0,0:1,1:0,0:46,46 chr1 73640 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:13,13:0,0:12,12 48:0:0:0:0,0:48,48:0,0:0,0 chr1 73649 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:25,25:0,0:0,0 48:0:0:0:0,0:43,43:0,0:5,5 chr1 73858 . A C,T . QSS_ref NT=het;QSS=147;QSS_NT=55;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:26,26:7,7:0,0:0,0 47:0:0:0:43,43:0,0:0,0:4,4 chr1 73890 . C G . QSS_ref NT=ref;QSS=7;QSS_NT=7;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:36,36:0,0:0,0 47:0:0:0:0,0:44,44:3,3:0,0 chr1 73913 . G A,T . QSS_ref NT=het;QSS=294;QSS_NT=43;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:9,9:0,0:31,31:0,0 45:0:0:0:0,0:0,0:37,37:8,8 chr1 73945 . A G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:34,34:0,0:0,0:0,0 38:0:0:0:37,37:0,0:1,1:0,0 chr1 73977 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:2,2:0,0:0,0:29,29 43:0:0:0:0,0:0,0:3,3:40,40 chr1 73993 . T A . QSS_ref NT=het;QSS=17;QSS_NT=17;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:17,17:0,0:0,0:10,10 45:0:0:0:1,1:0,0:0,0:44,44 chr1 74060 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:31,31:0,0:0,0 48:0:0:0:0,0:47,47:0,0:1,1 chr1 74063 . A G . PASS NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:31,31:0,0:0,0:0,0 47:0:0:0:44,44:0,0:3,3:0,0 chr1 74129 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:0,0:32,32 42:0:0:0:7,7:0,0:0,0:35,35 chr1 74175 . T C . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:0,0:27,27 37:0:0:0:0,0:4,4:0,0:33,33 chr1 74221 . A G,T . QSS_ref NT=het;QSS=237;QSS_NT=49;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:24,24:0,0:7,7:0,0 38:0:0:0:29,29:0,0:0,0:9,9 chr1 74385 . T G . PASS NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:6:0:0:0,0:0,0:0,0:26,26 48:5:0:0:0,0:0,0:4,4:39,39 chr1 74424 . A T . QSS_ref NT=ref;QSS=6;QSS_NT=6;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:38,38:0,0:0,0:0,0 37:0:0:0:35,35:0,0:0,0:2,2 chr1 74442 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:0,0:41,41:0,0:0,0 37:0:0:0:6,6:31,31:0,0:0,0 chr1 74587 . G T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:35,35:0,0 48:0:0:0:0,0:0,0:47,47:1,1 chr1 74599 . T C,G . QSS_ref NT=het;QSS=200;QSS_NT=31;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:6,6:31,31 51:0:0:0:0,0:7,7:0,0:44,44 chr1 74642 . A C . PASS NT=ref;QSS=56;QSS_NT=56;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:32,32:0,0:0,0:0,0 57:0:0:0:34,34:23,23:0,0:0,0 chr1 74855 . A C,T . QSS_ref NT=het;QSS=89;QSS_NT=54;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:27,27:9,9:0,0:0,0 45:0:0:0:42,42:0,0:0,0:3,3 chr1 74921 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:0,0:35,35:1,1 51:0:0:0:0,0:0,0:51,51:0,0 chr1 74972 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:9,9:0,0:24,24:0,0 50:0:0:0:1,1:0,0:49,49:0,0 chr1 75018 . C G,T . QSS_ref NT=het;QSS=120;QSS_NT=45;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:20,20:0,0:4,4 53:0:0:0:0,0:47,47:6,6:0,0 chr1 75070 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:23,23:0,0:3,3:0,0 43:0:0:0:42,42:0,0:1,1:0,0 chr1 75079 . T C . PASS NT=ref;QSS=32;QSS_NT=32;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:0,0:26,26 43:0:0:0:0,0:10,10:0,0:33,33 chr1 75130 . T C,G . QSS_ref NT=het;QSS=252;QSS_NT=66;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:7,7:0,0:18,18 53:0:0:0:0,0:0,0:15,15:38,38 chr1 75526 . A G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:1:0:0:20,20:0,0:0,0:5,5 46:2:0:0:36,36:0,0:8,8:0,0 chr1 75623 . T . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=TT->TT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:8:0:0:0,0:0,0:0,0:24,24 46:14:0:0:2,2:0,0:0,0:30,31 chr1 75629 . G C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:10:0:0:0,0:0,0:23,23:0,0 44:14:0:0:0,0:3,3:27,28:0,0 chr1 75723 . G T . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:3:0:0:0,0:0,0:27,27:0,0 47:0:0:0:0,0:0,0:45,45:2,2 chr1 75747 . T C,G . QSS_ref NT=het;QSS=49;QSS_NT=25;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:3,3:30,30 47:0:0:0:0,0:3,3:0,0:44,44 chr1 75818 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:1,1:34,34:0,0 51:0:0:0:0,0:4,4:47,47:0,0 chr1 76077 . C T . QSS_ref NT=het;QSS=6;QSS_NT=5;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:2,2:28,28:0,0:0,0 43:0:0:0:0,0:39,39:0,0:4,4 chr1 76365 . T A,G . QSS_ref NT=het;QSS=166;QSS_NT=47;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:6,6:23,23 43:0:0:0:8,8:0,0:0,0:35,35 chr1 76463 . T A,C . QSS_ref NT=het;QSS=109;QSS_NT=44;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:4,4:0,0:21,21 62:0:0:0:9,9:0,0:0,0:53,53 chr1 76502 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:22,22:0,0:3,3 52:0:0:0:8,8:44,44:0,0:0,0 chr1 76773 . C G,T . QSS_ref NT=het;QSS=178;QSS_NT=69;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:10:0:0:0,0:11,12:0,0:8,9 57:15:0:0:0,0:37,37:5,6:0,0 chr1 76881 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:33,33:0,0:3,3 52:0:0:0:0,0:52,52:0,0:0,0 chr1 76912 . C A . PASS NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:32,32:0,0:0,0 59:0:0:0:5,5:54,54:0,0:0,0 chr1 76922 . G A,T . QSS_ref NT=het;QSS=649;QSS_NT=67;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:12,12:19,19 55:0:0:0:14,14:0,0:41,41:0,0 chr1 77018 . G C . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:30,30:0,0 40:0:0:0:0,0:2,2:38,38:0,0 chr1 77133 . G A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:2,2:0,0:33,33:0,0 58:0:0:0:0,0:0,0:54,54:4,4 chr1 77160 . C G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:32,32:0,0:3,3 52:0:0:0:0,0:46,46:6,6:0,0 chr1 77205 . C A,T . QSS_ref NT=het;QSS=125;QSS_NT=43;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:4,4:25,25:0,0:0,0 62:0:0:0:0,0:51,51:0,0:11,11 chr1 77230 . A C . PASS NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:31,31:0,0:0,0:0,0 54:0:0:0:51,51:3,3:0,0:0,0 chr1 77262 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:1,1:0,0:33,33:0,0 48:0:0:0:0,0:0,0:48,48:0,0 chr1 77295 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:33,33:0,0:0,0 39:0:0:0:0,0:36,36:0,0:3,3 chr1 77302 . G A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:3,3:32,32:0,0 35:0:0:0:5,5:0,0:30,30:0,0 chr1 77362 . G A,T . QSS_ref NT=het;QSS=107;QSS_NT=60;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:21,21:8,8 36:0:0:0:3,3:0,0:33,33:0,0 chr1 77611 . T A,G . QSS_ref NT=het;QSS=221;QSS_NT=46;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:7,7:25,25 44:0:0:0:9,9:0,0:0,0:35,35 chr1 77701 . G A,T . QSS_ref NT=het;QSS=18;QSS_NT=18;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:22,22:3,3 56:0:0:0:3,3:0,0:53,53:0,0 chr1 77892 . T A,G . QSS_ref NT=het;QSS=44;QSS_NT=16;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:3,3:30,30 55:0:0:0:4,4:0,0:0,0:51,51 chr1 77913 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:3,3:0,0:0,0:26,26 58:0:0:0:3,3:0,0:0,0:55,55 chr1 78035 . T G . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:0,0:34,34 53:0:0:0:0,0:0,0:3,3:50,50 chr1 78086 . C A,T . QSS_ref NT=het;QSS=200;QSS_NT=61;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:20,20:0,0:9,9 40:0:0:0:7,7:33,33:0,0:0,0 chr1 78160 . G C . PASS NT=ref;QSS=27;QSS_NT=27;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:35,35:0,0 46:0:0:0:0,0:8,8:38,38:0,0 chr1 78442 . A C,T . QSS_ref NT=het;QSS=79;QSS_NT=15;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 44:0:0:0:40,40:0,0:0,0:4,4 52:0:0:0:48,48:4,4:0,0:0,0 chr1 78473 . G C,T . QSS_ref NT=het;QSS=145;QSS_NT=23;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 44:0:0:0:0,0:7,7:37,37:0,0 55:0:0:0:0,0:0,0:49,49:6,6 chr1 78557 . T C,G . QSS_ref NT=het;QSS=47;QSS_NT=30;SGT=GT->CT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:0,0:4,4:17,27 61:1:0:0:0,0:3,3:0,0:57,57 chr1 78618 . G T . QSS_ref NT=conflict;QSS=9;QSS_NT=0;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 19:6:0:0:1,1:0,0:12,19:0,0 54:11:0:0:0,0:0,0:41,43:2,2 chr1 78764 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:1,1:0,0:0,0:28,28 49:0:0:0:0,0:10,10:0,0:39,39 chr1 78836 . T C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:5,5:30,30 59:0:0:0:0,0:9,9:0,0:50,50 chr1 78908 . A C . PASS NT=ref;QSS=35;QSS_NT=35;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:33,33:0,0:0,0:0,0 55:2:0:0:42,42:11,11:0,0:0,0 chr1 78982 . A C . BCNoise;QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:11:0:0:24,28:0,0:0,0:0,0 45:18:0:0:26,34:1,1:0,0:0,0 chr1 79207 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:34,34:1,1:0,0 51:0:0:0:0,0:47,47:4,4:0,0 chr1 79252 . A G . PASS NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 44:3:0:0:41,41:0,0:0,0:0,0 46:3:0:0:41,41:0,0:2,2:0,0 chr1 79286 . C G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:6:0:0:0,0:32,32:0,0:3,3 52:5:0:0:0,0:43,43:4,4:0,0 chr1 79435 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:1:0:0:0,0:0,0:1,1:23,23 45:1:0:0:0,0:0,0:2,2:42,42 chr1 79478 . T G . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:0,0:31,31 44:0:0:0:0,0:0,0:5,5:39,39 chr1 79547 . T A,G . QSS_ref NT=het;QSS=115;QSS_NT=32;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:1:0:0:0,0:0,0:4,4:26,26 61:2:0:0:11,11:0,0:0,0:48,48 chr1 79630 . G C . QSS_ref NT=ref;QSS=10;QSS_NT=10;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 12:0:8:0:0,0:0,0:12,12:0,0 31:10:15:0:0,0:2,2:19,19:0,0 chr1 79669 . T . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=TT->TT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:4:0:0:0,0:1,1:0,0:16,16 47:8:0:0:0,0:0,0:2,2:37,37 chr1 79698 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:2:0:0:0,0:0,0:2,2:19,19 44:3:0:0:6,6:0,0:0,0:35,35 chr1 79760 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:34,34:0,0 51:0:0:0:0,0:0,0:50,50:1,1 chr1 79815 . G A,T . QSS_ref NT=het;QSS=36;QSS_NT=23;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:3,3:0,0:27,27:0,0 66:0:0:0:0,0:0,0:61,61:5,5 chr1 79852 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:1,1:0,0:23,23 70:0:0:0:3,3:0,0:0,0:67,67 chr1 79880 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:2,2:0,0:0,0:22,22 68:0:0:0:0,0:0,0:1,1:67,67 chr1 79889 . A C . QSS_ref NT=het;QSS=3;QSS_NT=3;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:22,22:0,0:2,2:0,0 68:0:0:0:65,65:3,3:0,0:0,0 chr1 79926 . G A,C . QSS_ref NT=het;QSS=174;QSS_NT=54;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:5,5:0,0:20,20:0,0 55:0:0:0:0,0:8,8:47,47:0,0 chr1 79984 . C T . QSS_ref NT=ref;QSS=19;QSS_NT=2;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:33,33:2,2:0,0 40:0:0:0:0,0:37,37:0,0:3,3 chr1 80028 . C A,G . QSS_ref NT=het;QSS=53;QSS_NT=10;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 46:3:0:0:4,4:39,39:0,0:0,0 55:2:0:0:0,0:48,48:5,5:0,0 chr1 80098 . A C,G . BCNoise;QSS_ref NT=het;QSS=4;QSS_NT=4;SGT=AC->AG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:8:0:0:26,27:2,2:0,1:0,0 72:33:0:0:35,51:0,0:4,5:0,0 chr1 80128 . A C,G . QSS_ref;BCNoise NT=het;QSS=79;QSS_NT=55;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:6:0:0:16,17:0,0:3,5:0,0 66:28:0:0:29,33:9,12:0,0:0,0 chr1 80182 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:1:0:0:1,1:0,0:23,23:0,0 73:6:0:0:3,3:0,0:64,64:0,0 chr1 80198 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:1:0:0:26,26:0,0:0,0:2,2 69:2:0:0:65,65:2,2:0,0:0,0 chr1 80232 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:2,2:26,26 56:0:0:0:4,4:0,0:0,0:52,52 chr1 80251 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:2,2:24,24:0,0:0,0 47:0:0:0:0,0:47,47:0,0:0,0 chr1 80252 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:27,27:0,0 48:0:0:0:5,5:0,0:43,43:0,0 chr1 80275 . T G . PASS NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:1,1:0,0:0,0:26,26 44:0:0:0:0,0:0,0:3,3:41,41 chr1 80311 . A G,T . QSS_ref NT=het;QSS=95;QSS_NT=38;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:23,23:0,0:0,0:4,4 50:0:0:0:45,45:0,0:5,5:0,0 chr1 80375 . C G . PASS NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:26,26:0,0:0,0 64:0:0:0:0,0:58,58:6,6:0,0 chr1 80390 . C A,T . QSS_ref NT=het;QSS=3;QSS_NT=3;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:2,2:24,24:0,0:0,0 64:0:0:0:0,0:53,53:0,0:11,11 chr1 80426 . C A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:2,2:21,21:0,0:0,0 65:0:0:0:0,0:60,60:5,5:0,0 chr1 80465 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:27,27:1,1 63:0:0:0:0,0:0,0:63,63:0,0 chr1 80466 . A T . QSS_ref NT=het;QSS=17;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:26,26:0,0:2,2:0,0 63:0:0:0:56,56:0,0:0,0:7,7 chr1 80700 . T C,G . QSS_ref NT=het;QSS=16;QSS_NT=16;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:2,2:27,27 52:0:0:0:0,0:7,7:0,0:45,45 chr1 80742 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:25,25:0,0:6,6 53:0:0:0:1,1:52,52:0,0:0,0 chr1 80744 . C G . PASS NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:31,31:0,0:0,0 52:0:0:0:0,0:48,48:4,4:0,0 chr1 80786 . G A,C . QSS_ref NT=het;QSS=78;QSS_NT=22;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:4,4:0,0:30,30:0,0 48:0:0:0:0,0:7,7:41,41:0,0 chr1 80848 . G A,T . QSS_ref NT=het;QSS=310;QSS_NT=58;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:8,8:0,0:23,23:0,0 46:0:0:0:0,0:0,0:38,38:8,8 chr1 80920 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:0,0:28,28 52:0:0:0:0,0:0,0:12,12:40,40 chr1 80967 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:0,0:28,28 47:0:0:0:0,0:0,0:4,4:43,43 chr1 81003 . T C,G . QSS_ref NT=het;QSS=177;QSS_NT=59;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:1:0:0:0,0:5,5:0,0:17,17 46:2:0:0:0,0:0,0:13,13:31,31 chr1 81121 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:9:0:0:0,0:0,0:2,3:20,21 48:12:0:0:3,3:0,0:0,0:33,34 chr1 81206 . T A,G . QSS_ref NT=het;QSS=55;QSS_NT=19;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:3,3:29,29 55:3:0:0:5,5:0,0:0,0:47,47 chr1 81263 . G C . QSS_ref NT=ref;QSS=12;QSS_NT=12;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:10:0:0:0,0:0,0:19,20:0,0 51:10:0:0:0,0:1,1:40,41:0,0 chr1 81364 . T A,G . QSS_ref NT=het;QSS=20;QSS_NT=20;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:1:0:0:0,0:0,0:4,4:26,26 55:3:0:0:2,2:0,0:0,0:50,50 chr1 81400 . T A,C . QSS_ref NT=het;QSS=51;QSS_NT=28;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:3,3:0,0:32,32 57:0:0:0:8,8:0,0:0,0:49,49 chr1 81518 . A G,T . QSS_ref NT=het;QSS=35;QSS_NT=26;SGT=AG->AT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:25,29:0,0:3,3:0,0 50:0:0:0:41,41:0,0:0,0:9,9 chr1 81712 . G A,T . QSS_ref NT=het;QSS=326;QSS_NT=62;SGT=AG->GT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:9,9:0,0:17,19:0,0 46:0:0:0:0,0:0,0:33,33:13,13 chr1 81845 . A T . PASS NT=ref;QSS=43;QSS_NT=43;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:27,27:0,0:0,0:0,0 46:0:0:0:33,33:0,0:0,0:13,13 chr1 81914 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:27,27:2,2:0,0:0,0 54:0:0:0:53,53:0,0:1,1:0,0 chr1 81961 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:2,2:32,32:0,0:0,0 51:0:0:0:0,0:48,48:0,0:3,3 chr1 81997 . G A . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:31,35:0,0 44:0:0:0:7,7:0,0:37,37:0,0 chr1 82033 . A C,T . QSS_ref NT=het;QSS=13;QSS_NT=13;SGT=AT->AC;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:19,23:0,0:0,0:5,5 43:0:0:0:41,41:2,2:0,0:0,0 chr1 82051 . T C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 18:0:0:0:0,0:0,0:2,2:16,20 51:0:0:0:0,0:3,3:0,0:48,48 chr1 82093 . A G,T . QSS_ref NT=het;QSS=82;QSS_NT=58;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:18,18:0,0:0,0:3,3 49:0:0:0:35,35:0,0:14,14:0,0 chr1 82181 . T C,G . QSS_ref NT=het;QSS=13;QSS_NT=13;SGT=CT->GT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:3,3:0,0:19,21 45:0:0:0:0,0:0,0:2,2:43,43 chr1 82239 . A G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:23,25:0,0:0,0:0,0 55:0:0:0:52,52:0,0:3,3:0,0 chr1 82252 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:0,0:25,25 54:0:0:0:0,0:7,7:0,0:47,47 chr1 82281 . G A,T . QSS_ref NT=het;QSS=40;QSS_NT=28;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:3,3:0,0:25,25:0,0 52:0:0:0:0,0:0,0:47,47:5,5 chr1 82307 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:21,21:0,0:4,4:0,0 41:0:0:0:39,39:2,2:0,0:0,0 chr1 82342 . C G . QSS_ref NT=het;QSS=2;QSS_NT=1;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:24,24:0,0:2,2 43:0:0:0:0,0:35,35:8,8:0,0 chr1 82470 . G C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:29,29:2,2 41:0:0:0:0,0:3,3:38,38:0,0 chr1 82510 . A C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:23,23:0,0:0,0:3,3 45:0:0:0:43,43:2,2:0,0:0,0 chr1 82555 . C G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:22,22:0,0:0,0 53:0:0:0:0,0:51,51:2,2:0,0 chr1 82568 . T A,G . QSS_ref NT=het;QSS=15;QSS_NT=15;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:2,2:21,21 55:0:0:0:3,3:0,0:0,0:52,52 chr1 82637 . A G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:25,25:0,0:0,0:0,0 47:0:0:0:39,39:0,0:8,8:0,0 chr1 82896 . G C,T . BCNoise;QSS_ref NT=het;QSS=96;QSS_NT=56;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:17:0:0:0,0:0,0:9,12:3,3 46:24:0:0:0,0:4,4:18,23:0,0 chr1 82955 . G A . BCNoise;QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=AG->AG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:16:0:0:3,3:0,0:11,12:0,0 48:28:0:0:0,0:0,1:19,19:1,1 chr1 82978 . C . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CC->CC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:6:0:0:0,0:19,19:0,0:1,1 56:19:0:0:0,0:35,36:2,2:0,0 chr1 83020 . T C . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:2:0:0:0,0:0,0:0,0:25,25 53:8:0:0:0,0:1,1:0,0:44,44 chr1 83072 . G C,T . QSS_ref NT=het;QSS=46;QSS_NT=19;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:3,3:29,29:0,0 40:0:0:0:0,0:0,0:37,37:3,3 chr1 83099 . T A . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:1,1:33,33 39:0:0:0:1,1:0,0:0,0:38,38 chr1 83124 . C G . PASS NT=ref;QSS=20;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:3,3:34,34:0,0:0,0 40:0:0:0:0,0:36,36:4,4:0,0 chr1 83173 . G A,T . QSS_ref NT=het;QSS=213;QSS_NT=49;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:27,27:7,7 41:0:0:0:7,7:0,0:34,34:0,0 chr1 83231 . C A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:16,16:9,9:0,0 45:0:0:0:8,8:37,37:0,0:0,0 chr1 83316 . A C,T . QSS_ref NT=het;QSS=307;QSS_NT=61;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:21,21:8,8:0,0:0,0 50:0:0:0:33,33:0,0:0,0:17,17 chr1 83412 . G A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:5,5:0,0:26,26:0,0 45:0:0:0:0,0:8,8:37,37:0,0 chr1 83485 . T C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:4,4:0,0:23,30 42:0:0:0:0,0:0,0:3,3:39,39 chr1 83540 . C A,G . QSS_ref NT=het;QSS=111;QSS_NT=47;SGT=CG->AC;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 16:0:0:0:0,0:10,23:6,6:0,0 39:0:0:0:9,9:30,30:0,0:0,0 chr1 83816 . A T . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 12:0:0:0:12,29:0,0:0,0:0,0 41:0:0:0:38,38:0,0:0,0:3,3 chr1 83898 . C T . QSS_ref NT=het;QSS=6;QSS_NT=5;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:2,2:19,30:0,0:0,0 46:0:0:0:0,0:42,42:0,0:4,4 chr1 83932 . C A . QSS_ref NT=ref;QSS=3;QSS_NT=2;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 19:0:0:0:0,0:18,26:0,0:1,1 53:0:0:0:1,1:52,52:0,0:0,0 chr1 83944 . A C,T . QSS_ref NT=het;QSS=261;QSS_NT=62;SGT=AT->AC;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 18:0:0:0:10,17:0,0:0,0:8,8 54:0:0:0:43,43:11,11:0,0:0,0 chr1 84007 . C A . QSS_ref NT=ref;QSS=6;QSS_NT=5;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 4:0:0:0:0,0:4,11:0,0:0,0 45:6:0:0:5,5:34,34:0,0:0,0 chr1 84042 . C G . BCNoise;QSS_ref NT=conflict;QSS=3070;QSS_NT=0;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 0:0:0:0:0,1:0,5:0,0:0,0 41:20:0:0:0,0:19,19:2,2:0,0 chr1 84116 . G A . QSS_ref NT=conflict;QSS=1;QSS_NT=0;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 0:0:0:0:0,0:0,3:0,9:0,0 48:6:0:0:4,4:0,0:38,38:0,0 chr1 84232 . G C . QSS_ref NT=ref;QSS=1;QSS_NT=0;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 0:0:0:0:0,0:0,0:0,18:0,1 24:0:0:0:0,0:2,2:22,22:0,0 chr2 420 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 17:0:0:0:0,0:17,17:0,0:0,0 49:11:0:0:0,0:36,36:0,0:2,2 chr2 433 . T C . QSS_ref NT=ref;QSS=11;QSS_NT=11;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 19:2:0:0:0,0:0,0:0,0:17,18 50:14:0:0:0,0:1,1:0,0:35,36 chr2 483 . C . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CC->CC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:8:0:0:0,0:16,16:0,0:0,0 46:10:0:0:2,2:34,36:0,0:0,0 chr2 502 . T A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:4:0:0:0,0:0,0:0,0:16,16 43:4:0:0:1,1:0,0:0,0:38,38 chr2 532 . G C . QSS_ref NT=ref;QSS=10;QSS_NT=10;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 17:1:0:0:0,0:0,0:16,19:0,0 47:1:0:0:0,0:3,3:43,43:0,0 chr2 594 . T A,C . QSS_ref NT=het;QSS=98;QSS_NT=54;SGT=CT->AT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 15:0:0:0:0,0:5,5:0,0:10,17 54:0:0:0:5,5:0,0:0,0:49,49 chr2 738 . G A,T . QSS_ref NT=het;QSS=38;QSS_NT=28;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:3,3:0,0:25,25:0,0 62:0:0:0:0,0:0,0:52,52:10,10 chr2 799 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:3,3:28,28 54:0:0:0:6,6:0,0:0,0:48,48 chr2 845 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:26,26:0,0 50:0:0:0:1,1:0,0:49,49:0,0 chr2 873 . C A,G . QSS_ref NT=het;QSS=19;QSS_NT=19;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:20,20:2,2:0,0 52:0:0:0:3,3:49,49:0,0:0,0 chr2 897 . A C,T . QSS_ref NT=het;QSS=201;QSS_NT=59;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:19,19:6,6:0,0:0,0 51:0:0:0:39,39:0,0:0,0:12,12 chr2 1020 . G A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:4,4:0,0:28,28:0,0 56:0:0:0:0,0:2,2:54,54:0,0 chr2 1036 . G A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:23,26:2,2 53:0:0:0:3,3:0,0:50,50:0,0 chr2 1097 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 13:0:0:0:0,0:0,0:0,0:13,20 49:0:0:0:0,0:2,2:0,0:47,47 chr2 1116 . G A . QSS_ref NT=conflict;QSS=10;QSS_NT=0;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 12:0:0:0:0,0:0,2:12,17:0,0 44:0:0:0:12,12:0,0:32,32:0,0 chr2 1176 . T A,G . QSS_ref NT=het;QSS=95;QSS_NT=25;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:4,4:29,29 41:0:0:0:7,7:0,0:0,0:34,34 chr2 1273 . C T . PASS NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:30,30:0,0:0,0 60:0:0:0:0,0:55,55:0,0:5,5 chr2 1308 . T G . PASS NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:0,0:29,29 57:0:0:0:0,0:0,0:4,4:53,53 chr2 1389 . G C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:23,23:3,3 45:0:0:0:0,0:3,3:42,42:0,0 chr2 1458 . C A . QSS_ref NT=ref;QSS=6;QSS_NT=6;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:30,30:0,0:0,0 37:0:0:0:17,17:20,20:0,0:0,0 chr2 1610 . T A,C . QSS_ref NT=het;QSS=28;QSS_NT=28;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:2,2:0,0:0,0:18,18 59:0:0:0:0,0:5,5:0,0:54,54 chr2 1849 . T A,G . QSS_ref NT=het;QSS=164;QSS_NT=59;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:1:0:0:6,6:0,0:0,0:19,19 59:2:0:0:0,0:0,0:5,5:52,52 chr2 1891 . A T . PASS NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:26,26:1,1:0,0:0,0 59:0:0:0:55,55:0,0:0,0:4,4 chr2 1907 . T G . QSS_ref NT=het;QSS=16;QSS_NT=9;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:2,2:0,0:0,0:28,28 56:0:0:0:0,0:0,0:5,5:51,51 chr2 1934 . C A,T . QSS_ref NT=het;QSS=209;QSS_NT=47;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:26,26:0,0:6,6 54:0:0:0:10,10:44,44:0,0:0,0 chr2 2020 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:5:0:0:3,3:20,20:0,0:0,0 53:16:0:0:2,2:35,36:0,0:0,0 chr2 2101 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:1:0:0:0,0:0,0:2,2:27,27 49:4:0:0:0,0:1,1:0,0:44,44 chr2 2184 . T G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:0,0:34,34 61:0:0:0:0,0:0,0:5,5:56,56 chr2 2242 . T C,G . QSS_ref NT=het;QSS=67;QSS_NT=32;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:3,3:0,0:27,27 49:0:0:0:0,0:0,0:4,4:45,45 chr2 2274 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:2,2:0,0:0,0:30,30 46:0:0:0:0,0:1,1:0,0:45,45 chr2 2338 . A C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:24,24:3,3:0,0:0,0 49:0:0:0:47,47:0,0:0,0:2,2 chr2 2396 . C G,T . QSS_ref NT=het;QSS=20;QSS_NT=20;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:21,21:2,2:0,0 48:0:0:0:0,0:43,43:0,0:5,5 chr2 2447 . T A,C . QSS_ref NT=het;QSS=72;QSS_NT=49;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:4,4:0,0:21,21 53:0:0:0:3,3:0,0:0,0:50,50 chr2 2465 . C A,G . QSS_ref NT=het;QSS=18;QSS_NT=18;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:2,2:21,21:0,0:0,0 58:0:0:0:0,0:56,56:2,2:0,0 chr2 2503 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:0,0:28,28 63:0:0:0:0,0:0,0:1,1:62,62 chr2 2509 . T A . QSS_ref NT=het;QSS=2;QSS_NT=1;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:2,2:30,30 62:0:0:0:6,6:0,0:0,0:56,56 chr2 2535 . A C,T . QSS_ref NT=het;QSS=29;QSS_NT=28;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:28,28:4,4:0,0:0,0 56:0:0:0:50,50:0,0:0,0:6,6 chr2 2589 . G . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=GG->GG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:37,37:0,0 46:6:0:0:0,0:0,0:38,38:2,2 chr2 2599 . T G . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:1:0:0:0,0:0,0:0,0:29,29 44:6:0:0:0,0:0,0:9,9:29,29 chr2 2643 . T A . QSS_ref;BCNoise NT=ref;QSS=2;QSS_NT=2;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:9:0:0:0,0:1,1:0,0:19,21 41:25:0:0:2,2:0,0:0,0:14,19 chr2 2651 . A C . BCNoise NT=ref;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:9:0:0:19,21:1,1:0,0:0,0 44:28:0:0:16,16:0,0:0,0:0,0 chr2 2653 . C T . BCNoise;QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:9:0:0:0,0:17,19:0,0:1,1 44:28:0:0:0,0:16,16:0,0:0,0 chr2 2748 . A C . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:33,33:0,0:0,0:0,0 54:0:0:0:53,53:1,1:0,0:0,0 chr2 2833 . T A . PASS NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:0,0:29,29 55:0:0:0:3,3:0,0:0,0:52,52 chr2 2922 . G A . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:2,2:0,0:30,30:0,0 63:0:0:0:0,0:0,0:61,61:2,2 chr2 2941 . G T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:30,30:1,1 55:0:0:0:0,0:0,0:54,54:1,1 chr2 2948 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:22,22:3,3 56:0:0:0:0,0:0,0:51,51:5,5 chr2 3023 . T G . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:1,1:0,0:0,0:29,29 56:0:0:0:0,0:0,0:1,1:55,55 chr2 3038 . C A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:29,29:0,0:0,0 57:0:0:0:1,1:56,56:0,0:0,0 chr2 3054 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:33,33:0,0:4,4:0,0 53:0:0:0:53,53:0,0:0,0:0,0 chr2 3095 . C A . QSS_ref NT=het;QSS=17;QSS_NT=17;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:14,14:17,17:0,0:0,0 55:0:0:0:0,0:55,55:0,0:0,0 chr2 3297 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:29,29:0,0:0,0:4,4 164:0:0:0:164,274:0,0:0,0:0,0 chr2 3359 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:10,10:19,25:0,0:0,0 156:0:0:0:0,0:156,261:0,0:0,0 chr2 3560 . C A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:6,12:18,18:0,0 259:0:0:0:0,0:259,265:0,0:0,0 chr2 3676 . A C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:32,32:1,1:0,0:0,0 266:0:0:0:266,268:0,0:0,0:0,0 chr2 3695 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:3,3:27,27:0,0 270:0:0:0:0,0:0,0:270,271:0,0 chr2 3729 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:23,23:2,2:0,0:0,0 290:0:0:0:290,290:0,0:0,0:0,0 chr2 3747 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:1,1:0,0:0,0:26,26 294:0:0:0:0,0:0,0:0,0:294,296 chr2 3751 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:2,2:0,0:26,26 300:0:0:0:0,0:0,0:0,0:300,302 chr2 3791 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:14,14:22,22:0,0:0,0 298:0:0:0:0,0:298,300:0,0:0,0 chr2 3870 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 13:0:0:0:12,19:0,0:0,0:1,1 269:0:0:0:269,271:0,0:0,0:0,0 chr2 3876 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 11:0:0:0:0,0:2,2:9,17:0,0 278:0:0:0:0,0:0,0:278,280:0,0 chr2 3998 . A T . QSS_ref NT=conflict;QSS=3070;QSS_NT=0;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 7:0:0:0:6,19:0,0:0,0:1,1 304:0:0:0:304,311:0,0:0,0:0,0 chr2 4163 . G C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:1,1:32,32:0,0 271:0:0:0:0,0:0,0:271,290:0,0 chr2 4184 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:10,10:0,0:23,23 257:0:0:0:0,0:0,0:0,0:257,281 chr2 4306 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:26,26:0,0:4,4 291:0:0:0:0,0:291,294:0,0:0,0 chr2 4331 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:1,1:0,0:24,24 288:0:0:0:0,0:0,0:0,0:288,291 chr2 4346 . C A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:1,1:21,21:0,0:0,0 281:0:0:0:0,0:281,285:0,0:0,0 chr2 4353 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:3,3:18,18:0,0:0,0 275:0:0:0:0,0:275,279:0,0:0,0 chr2 4373 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:1,1:0,0:20,20 268:0:0:0:0,0:0,0:0,0:268,271 chr2 4391 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:18,18:0,0:2,2:0,0 256:0:0:0:256,257:0,0:0,0:0,0 chr2 4553 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:0,0:4,4:17,17 265:0:0:0:0,0:0,0:0,0:265,269 chr2 4671 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:1,1:28,28:0,0:0,0 294:0:0:0:0,0:294,295:0,0:0,0 chr2 4758 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:4,4:0,0:29,29 285:0:0:0:0,0:0,0:0,0:285,287 chr2 4818 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:25,25:0,0:6,6:0,0 276:0:0:0:276,280:0,0:0,0:0,0 chr2 4871 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:20,20:3,3 259:0:0:0:0,0:0,0:259,262:0,0 chr2 4996 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:24,24:7,7 261:0:0:0:0,0:0,0:261,266:0,0 chr2 5139 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:22,22:4,4:0,0 303:0:0:0:0,0:303,305:0,0:0,0 chr2 5188 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:3,3:0,0:0,0:29,29 291:0:0:0:0,0:0,0:0,0:291,295 chr2 5233 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:9,9:0,0:27,27:0,0 272:0:0:0:0,0:0,0:272,274:0,0 chr2 5369 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:5,5:23,23 290:0:0:0:0,0:0,0:0,0:290,291 chr2 5500 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:5,5:21,21:0,0 276:0:0:0:0,0:0,0:276,285:0,0 chr2 5523 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:0,0:2,2:20,20 245:0:0:0:0,0:0,0:0,0:245,254 chr2 5571 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:9,9:15,15:0,0:0,0 230:0:0:0:0,0:230,235:0,0:0,0 chr2 5672 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:1,1:34,34:0,0:0,0 273:0:0:0:0,0:273,286:0,0:0,0 chr2 5780 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:19,23:0,0:5,5:0,0 210:0:0:0:210,274:0,0:0,0:0,0 chr2 5811 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:4,4:0,0:17,21 197:0:0:0:0,0:0,0:0,0:197,270 chr2 5874 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:30,30:0,0:2,2 159:0:0:0:0,0:159,247:0,0:0,0 chr2 5986 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:0,0:3,3:39,39:0,0 46:0:0:0:0,0:0,0:46,46:0,0 chr2 6133 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:5,5:0,0:32,32 49:0:0:0:0,0:0,0:0,0:49,49 chr2 6619 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:3,3:29,29:0,0 0:0:0:0:0,0:0,0:0,0:0,0 chr2 6895 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:2,2:26,26 0:0:0:0:0,0:0,0:0,0:0,0 chr2 7335 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:20,21:0,0:1,1:0,0 51:0:0:0:51,69:0,0:0,0:0,0 chr2 7490 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:24,24:0,0:1,1:0,0 78:0:0:0:78,80:0,0:0,0:0,0 chr2 7675 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:2,2:29,29 44:0:0:0:0,0:0,0:0,0:44,44 chr2 7726 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:2,2:0,0:30,30:0,0 31:0:0:0:0,0:0,0:31,31:0,0 chr2 7788 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:3,3:0,0:21,22 33:0:0:0:0,0:2,2:0,0:31,31 chr2 7852 . C G . QSS_ref NT=conflict;QSS=1;QSS_NT=0;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 11:0:0:0:1,1:10,17:0,0:0,0 55:0:0:0:0,0:52,52:3,3:0,0 chr2 7872 . C A,G . QSS_ref NT=het;QSS=9;QSS_NT=9;SGT=CG->AC;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 11:0:0:0:0,0:9,18:2,2:0,0 58:0:0:0:5,5:53,53:0,0:0,0 chr2 7923 . T C,G . QSS_ref NT=het;QSS=325;QSS_NT=66;SGT=GT->CT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 17:0:0:0:0,0:0,0:8,8:9,17 62:0:0:0:0,0:16,16:0,0:46,46 chr2 8031 . T A,G . QSS_ref NT=het;QSS=8;QSS_NT=8;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:0,0:0,0:2,2:18,18 51:0:0:0:5,5:0,0:0,0:46,46 chr2 8118 . G A,T . QSS_ref NT=het;QSS=391;QSS_NT=67;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:18,18:11,11 47:0:0:0:17,17:0,0:30,30:0,0 chr2 8205 . A C,G . QSS_ref NT=het;QSS=101;QSS_NT=30;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:30,30:0,0:4,4:0,0 45:0:0:0:39,39:6,6:0,0:0,0 chr2 8336 . T A,G . QSS_ref NT=het;QSS=69;QSS_NT=45;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:3,3:21,26 58:0:0:0:3,3:0,0:0,0:55,55 chr2 8365 . G T . QSS_ref NT=ref;QSS=10;QSS_NT=10;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 8:0:0:0:0,1:0,0:8,16:0,0 50:0:0:0:0,0:0,0:41,41:9,9 chr2 8483 . A T . QSS_ref NT=ref;QSS=13;QSS_NT=11;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:22,23:1,1:0,0:0,0 47:0:0:0:42,42:0,0:0,0:5,5 chr2 8527 . T A . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:0,0:25,25 48:0:0:0:4,4:0,0:0,0:44,44 chr2 8579 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:29,29:0,0:1,1:0,0 47:0:0:0:43,43:0,0:4,4:0,0 chr2 8606 . C A,G . QSS_ref NT=het;QSS=78;QSS_NT=29;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:31,31:4,4:0,0 55:0:0:0:14,14:41,41:0,0:0,0 chr2 8817 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:35,35:2,2:0,0 47:0:0:0:0,0:47,47:0,0:0,0 chr2 8831 . C T . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:35,35:0,0:0,0 52:0:0:0:0,0:49,49:0,0:3,3 chr2 8886 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:24,24:1,1:0,0 41:0:0:0:2,2:39,39:0,0:0,0 chr2 8939 . G C . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:1:0:0:0,0:0,0:24,24:0,0 46:5:0:0:0,0:1,1:40,40:0,0 chr2 8963 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:3:0:0:0,0:0,0:0,0:30,30 59:16:0:0:0,0:1,1:0,0:42,42 chr2 8966 . G T . QSS_ref NT=ref;QSS=3;QSS_NT=2;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:3:0:0:0,0:2,2:29,29:0,0 59:16:0:0:0,0:0,0:40,40:3,3 chr2 8996 . T A,G . QSS_ref NT=het;QSS=10;QSS_NT=9;SGT=GT->AT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:6:0:0:0,0:0,0:2,2:29,31 58:23:0:0:3,3:0,0:0,0:32,33 chr2 9041 . A T . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:9:0:0:22,22:0,0:0,0:2,2 59:14:0:0:43,44:2,5:0,0:0,0 chr2 9072 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:4:0:0:0,0:18,18:0,0:8,8 50:6:0:0:0,0:43,43:0,0:1,1 chr2 9240 . C G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:14,14:0,0:18,18 47:0:0:0:0,0:43,43:4,4:0,0 chr2 9269 . G C . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:33,33:0,0 51:0:0:0:0,0:3,3:48,48:0,0 chr2 9352 . C A,T . QSS_ref NT=het;QSS=17;QSS_NT=16;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:28,28:0,0:2,2 60:0:0:0:6,6:54,54:0,0:0,0 chr2 9484 . T A,C . QSS_ref NT=het;QSS=357;QSS_NT=50;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:9,9:0,0:27,27 64:0:0:0:14,14:0,0:0,0:50,50 chr2 9656 . G C . PASS NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:30,30:0,0 61:0:0:0:0,0:1,1:60,60:0,0 chr2 9724 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:0,0:29,29 65:0:0:0:24,24:0,0:0,0:41,41 chr2 9836 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:23,23:0,0:0,0:0,0 50:0:0:0:48,48:0,0:0,0:2,2 chr2 9851 . A G,T . QSS_ref NT=het;QSS=216;QSS_NT=62;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:17,17:0,0:0,0:8,8 52:0:0:0:37,37:0,0:15,15:0,0 chr2 9952 . A T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:33,33:0,0:0,0:1,1 56:0:0:0:56,56:0,0:0,0:0,0 chr2 9976 . T C . QSS_ref NT=het;QSS=18;QSS_NT=10;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:2,2:0,0:0,0:29,29 51:0:0:0:0,0:4,4:0,0:47,47 chr2 10165 . A C,G . QSS_ref NT=het;QSS=217;QSS_NT=49;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:25,25:6,6:0,0:0,0 54:0:0:0:47,47:0,0:7,7:0,0 chr2 10228 . C G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:20,20:0,0:2,2 61:0:0:0:0,0:59,59:2,2:0,0 chr2 10241 . T A . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:0,0:0,0:21,21 55:0:0:0:4,4:0,0:0,0:51,51 chr2 10277 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:0,0:0,0:22,22 49:0:0:0:0,0:0,0:1,1:48,48 chr2 10342 . T A,C . QSS_ref NT=het;QSS=49;QSS_NT=36;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:3,3:0,0:22,22 42:0:0:0:3,3:0,0:0,0:39,39 chr2 10394 . T C . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 18:0:0:0:0,0:0,0:0,0:18,18 39:0:0:0:0,0:3,3:0,0:36,36 chr2 10412 . G C . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:0,0:20,20:1,1 43:0:0:0:0,0:1,1:42,42:0,0 chr2 10423 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:22,22:0,0:1,1:0,0 44:0:0:0:43,43:0,0:0,0:1,1 chr2 10471 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:1,1:0,0:32,32:0,0 46:0:0:0:0,0:2,2:44,44:0,0 chr2 10483 . G C . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:1,1:0,0:33,33:0,0 48:0:0:0:0,0:1,1:47,47:0,0 chr2 10499 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:28,28:0,0:3,3:0,0 50:0:0:0:40,40:0,0:10,10:0,0 chr2 10540 . T C,G . QSS_ref NT=het;QSS=16;QSS_NT=15;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:2,2:0,0:32,32 45:0:0:0:0,0:0,0:7,7:38,38 chr2 10584 . A C,T . QSS_ref NT=het;QSS=81;QSS_NT=25;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:29,29:4,4:0,0:0,0 50:0:0:0:46,46:0,0:0,0:4,4 chr2 10610 . G C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:28,28:5,5 51:0:0:0:0,0:2,2:49,49:0,0 chr2 10620 . T G . PASS NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:0,0:29,29 49:0:0:0:0,0:0,0:7,7:42,42 chr2 10806 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:3,3:30,30:0,0 58:0:0:0:0,0:3,3:55,55:0,0 chr2 10838 . C T . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:25,25:0,0:0,0 54:0:0:0:0,0:53,53:0,0:1,1 chr2 10843 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:4,4:21,21:0,0 58:0:0:0:0,0:3,3:55,55:0,0 chr2 10867 . G T . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:23,23:0,0 56:0:0:0:0,0:0,0:53,53:3,3 chr2 10877 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:19,19:2,2:0,0:0,0 56:0:0:0:47,47:9,9:0,0:0,0 chr2 10952 . C G . PASS NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:28,28:0,0:0,0 53:0:0:0:0,0:48,48:5,5:0,0 chr2 11050 . A G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:25,25:0,0:1,1:0,0 61:0:0:0:61,61:0,0:0,0:0,0 chr2 11072 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:29,29:0,0 58:0:0:0:0,0:1,1:57,57:0,0 chr2 11084 . T C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:6,6:23,23 62:0:0:0:0,0:15,15:0,0:47,47 chr2 11186 . A T . PASS NT=ref;QSS=24;QSS_NT=24;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:38,38:0,0:0,0:0,0 56:0:0:0:49,49:0,0:0,0:7,7 chr2 11288 . G A,C . QSS_ref NT=het;QSS=210;QSS_NT=49;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:6,6:25,25:0,0 51:0:0:0:7,7:0,0:44,44:0,0 chr2 11366 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:1,1:0,0:30,30 51:0:0:0:0,0:1,1:0,0:50,50 chr2 11370 . T A . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:0,0:35,35 51:0:0:0:1,1:0,0:0,0:50,50 chr2 11392 . A C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:33,33:0,0:0,0:0,0 49:0:0:0:45,45:4,4:0,0:0,0 chr2 11413 . C A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:1,1:36,36:0,0:0,0 51:0:0:0:1,1:50,50:0,0:0,0 chr2 11448 . C G,T . QSS_ref NT=het;QSS=396;QSS_NT=61;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:24,24:0,0:10,10 53:0:0:0:0,0:34,34:19,19:0,0 chr2 11553 . T C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:2,2:23,23 56:0:0:0:0,0:5,5:0,0:51,51 chr2 11617 . T A,C . QSS_ref NT=het;QSS=77;QSS_NT=47;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:3,3:0,0:0,0:23,23 55:0:0:0:0,0:8,8:0,0:47,47 chr2 11680 . G A,T . QSS_ref NT=het;QSS=51;QSS_NT=35;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:7:0:0:0,0:0,0:27,27:5,5 42:3:0:0:3,3:0,0:36,36:0,0 chr2 11783 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:4:0:0:0,0:0,0:1,1:26,26 44:4:0:0:0,0:0,0:2,2:38,38 chr2 11841 . T A . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:1:0:0:5,5:0,0:0,0:33,33 53:0:0:0:0,0:2,2:0,0:51,51 chr2 11851 . C G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:1:0:0:0,0:40,40:0,0:0,0 54:0:0:0:0,0:47,47:7,7:0,0 chr2 11892 . T C,G . QSS_ref NT=het;QSS=169;QSS_NT=41;SGT=CT->GT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 47:12:0:0:0,0:8,8:0,0:27,30 56:8:0:0:0,0:0,0:5,5:43,45 chr2 11921 . C A,T . BCNoise;QSS_ref NT=het;QSS=45;QSS_NT=45;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 14:0:26:0:4,4:10,10:0,0:0,0 28:15:12:0:0,0:11,11:0,0:2,2 chr2 12011 . G A,C . QSS_ref NT=het;QSS=220;QSS_NT=46;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:6:0:0:8,8:0,0:28,28:0,0 45:0:0:0:0,0:7,7:38,38:0,0 chr2 12075 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:35,35:0,0:0,0:1,1 39:0:0:0:36,36:0,0:3,3:0,0 chr2 12086 . G A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:29,29:5,5 42:0:0:0:2,2:0,0:40,40:0,0 chr2 12119 . T G . QSS_ref NT=het;QSS=19;QSS_NT=14;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:2,2:0,0:27,27 49:0:0:0:0,0:0,0:7,7:42,42 chr2 12158 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:1,1:0,0:25,25 56:0:0:0:0,0:12,12:0,0:44,44 chr2 12210 . G C . QSS_ref NT=het;QSS=5;QSS_NT=5;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:0,0:18,18:23,23:0,0 49:0:0:0:0,0:2,2:47,47:0,0 chr2 12395 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:1,1:0,0:39,39:0,0 53:0:0:0:0,0:0,0:53,53:0,0 chr2 12571 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:23,23:0,0:7,7 57:0:0:0:8,8:49,49:0,0:0,0 chr2 12672 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:36,36:0,0:0,0 58:0:0:0:0,0:40,40:0,0:18,18 chr2 12921 . T A,G . QSS_ref NT=het;QSS=37;QSS_NT=36;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:5,5:0,0:0,0:25,25 39:0:0:0:0,0:0,0:2,2:37,37 chr2 12988 . T C,G . QSS_ref NT=het;QSS=69;QSS_NT=35;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:3,3:0,0:22,22 51:0:0:0:0,0:0,0:12,12:39,39 chr2 13059 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:2,2:0,0:0,0:24,24 61:0:0:0:0,0:0,0:2,2:59,59 chr2 13076 . T A,C . QSS_ref NT=het;QSS=8;QSS_NT=8;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:2,2:0,0:26,26 61:0:0:0:2,2:0,0:0,0:59,59 chr2 13098 . T A,C . QSS_ref NT=het;QSS=225;QSS_NT=58;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:9,9:0,0:0,0:22,22 69:0:0:0:0,0:20,20:0,0:49,49 chr2 13202 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:3:0:0:0,0:5,5:26,26:0,0 40:5:0:0:0,0:1,1:34,34:0,0 chr2 13287 . A T . QSS_ref NT=conflict;QSS=3070;QSS_NT=0;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:3:0:0:32,32:0,0:0,0:0,1 62:16:0:0:45,45:0,0:0,0:1,2 chr2 13308 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:1:0:0:0,0:5,5:29,29:0,0 65:12:0:0:0,0:0,0:53,53:0,0 chr2 13315 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:1:0:0:0,0:0,0:33,33:0,0 66:9:0:0:3,3:0,0:54,54:0,0 chr2 13383 . A C,T . QSS_ref NT=het;QSS=127;QSS_NT=38;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:23,23:0,0:0,0:4,4 68:0:0:0:57,57:11,11:0,0:0,0 chr2 13463 . A G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:19,19:0,0:3,3:0,0 63:0:0:0:49,49:0,0:0,0:14,14 chr2 13564 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:29,29:0,0:0,0 64:0:0:0:0,0:63,63:0,0:1,1 chr2 13595 . A G . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:31,31:0,0:0,0:0,0 61:0:0:0:56,56:0,0:5,5:0,0 chr2 13629 . G A,C . QSS_ref NT=het;QSS=415;QSS_NT=56;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:10,10:25,25:0,0 61:0:0:0:24,24:0,0:37,37:0,0 chr2 13752 . C A,T . QSS_ref NT=het;QSS=139;QSS_NT=45;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:24,24:0,0:6,6 48:0:0:0:5,5:43,43:0,0:0,0 chr2 13872 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:6,6:18,18:0,0:0,0 61:0:0:0:0,0:50,50:0,0:11,11 chr2 13914 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:28,28:0,0:0,0:0,0 61:0:0:0:57,57:0,0:0,0:4,4 chr2 13942 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:26,26:0,0:0,0:0,0 57:0:0:0:54,54:3,3:0,0:0,0 chr2 13956 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:22,22:0,0:6,6 54:0:0:0:15,15:39,39:0,0:0,0 chr2 14066 . T A . QSS_ref NT=het;QSS=4;QSS_NT=3;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:2,2:0,0:29,29 50:0:0:0:4,4:0,0:0,0:46,46 chr2 14090 . A C,G . QSS_ref NT=het;QSS=78;QSS_NT=30;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:27,27:4,4:0,0:0,0 45:0:0:0:39,39:0,0:6,6:0,0 chr2 14140 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:2,2:0,0:0,0:32,32 49:0:0:0:2,2:0,0:0,0:47,47 chr2 14167 . C A,G . QSS_ref NT=het;QSS=202;QSS_NT=55;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:6,6:22,22:0,0:0,0 52:0:0:0:0,0:41,41:11,11:0,0 chr2 14274 . A C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:35,35:0,0:0,0:0,0 54:0:0:0:53,53:1,1:0,0:0,0 chr2 14275 . G T . PASS NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:1,1:33,33:0,0 54:0:0:0:0,0:0,0:51,51:3,3 chr2 14311 . T C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:0,0:0,0:3,3:39,39 47:0:0:0:0,0:4,4:0,0:43,43 chr2 14325 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:10,10:0,0:0,0:28,28 47:0:0:0:0,0:9,9:0,0:38,38 chr2 14402 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:27,27:0,0:0,0:0,0 50:0:0:0:47,47:0,0:3,3:0,0 chr2 14442 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:25,25:0,0:0,0:0,0 56:0:0:0:55,55:0,0:0,0:1,1 chr2 14504 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:1,1:0,0:28,28 62:0:0:0:0,0:2,2:0,0:60,60 chr2 14525 . C A,T . QSS_ref NT=het;QSS=159;QSS_NT=35;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:5,5:27,27:0,0:0,0 57:0:0:0:0,0:48,48:0,0:9,9 chr2 14605 . G C . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:1,1:0,0:27,27:0,0 45:0:0:0:0,0:5,5:40,40:0,0 chr2 14630 . A C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:29,29:0,0:0,0:6,6 51:0:0:0:43,43:8,8:0,0:0,0 chr2 14752 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:2,2:39,39:0,0:0,0 46:0:0:0:0,0:43,43:0,0:3,3 chr2 14791 . A C,G . QSS_ref NT=het;QSS=47;QSS_NT=4;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:39,39:0,0:3,3:0,0 48:0:0:0:44,44:4,4:0,0:0,0 chr2 14820 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:33,33:0,0:0,0:0,0 46:0:0:0:43,43:3,3:0,0:0,0 chr2 14842 . G C,T . QSS_ref NT=het;QSS=231;QSS_NT=49;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:27,27:7,7 47:0:0:0:0,0:12,12:35,35:0,0 chr2 14993 . T G . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:3:0:0:0,0:0,0:0,0:25,25 46:7:0:0:0,0:0,0:6,6:33,33 chr2 15185 . A T . QSS_ref NT=ref;QSS=8;QSS_NT=8;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:31,31:0,0:0,0:0,0 36:0:0:0:33,33:0,0:0,0:3,3 chr2 15208 . C A . QSS_ref NT=ref;QSS=8;QSS_NT=8;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:1:0:0:0,0:38,38:0,0:0,0 37:2:0:0:5,5:30,30:0,0:0,0 chr2 15285 . G C,T . QSS_ref NT=het;QSS=121;QSS_NT=50;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 44:11:0:0:0,0:0,0:26,26:7,7 52:15:0:0:0,0:4,4:33,33:0,0 chr2 15304 . T G . BCNoise NT=ref;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:16:0:0:0,0:0,0:1,1:22,22 48:25:0:0:0,0:0,0:0,0:23,23 chr2 15352 . C G . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:2:0:0:0,0:34,34:0,0:0,0 55:7:0:0:0,0:44,44:4,4:0,0 chr2 15383 . C T . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:34,34:0,0:0,0 62:2:0:0:0,0:59,59:0,0:1,1 chr2 15422 . G C . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:32,32:0,0 59:0:0:0:0,0:4,4:55,55:0,0 chr2 15491 . C A,G . QSS_ref NT=het;QSS=79;QSS_NT=53;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:1:0:0:4,4:16,16:0,0:0,0 39:7:0:0:0,0:29,29:3,3:0,0 chr2 15589 . C A,G . QSS_ref;BCNoise NT=het;QSS=12;QSS_NT=12;SGT=CG->AC;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:10:0:0:0,0:9,13:2,2:0,0 43:19:0:0:5,6:19,29:0,0:0,0 chr2 15698 . A C . QSS_ref;BCNoise NT=ref;QSS=1;QSS_NT=1;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:13:0:0:14,14:0,0:0,0:0,0 63:24:0:0:38,38:0,0:0,0:1,1 chr2 15720 . T A,C . BCNoise;QSS_ref NT=het;QSS=13;QSS_NT=13;SGT=CT->AT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:13:0:0:0,0:2,2:0,0:14,19 59:23:0:0:9,10:0,0:0,0:27,31 chr2 15818 . C A . QSS_ref NT=het;QSS=3;QSS_NT=3;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:3,3:31,31:0,0:0,0 45:0:0:0:0,0:43,43:0,0:2,2 chr2 15843 . C A,T . QSS_ref NT=het;QSS=285;QSS_NT=58;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:23,23:0,0:8,8 37:0:0:0:11,11:26,26:0,0:0,0 chr2 15891 . A G . PASS NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:2:0:0:31,31:0,0:0,0:0,0 40:2:0:0:34,34:0,0:4,4:0,0 chr2 15948 . C G,T . BCNoise;QSS_ref NT=het;QSS=50;QSS_NT=38;SGT=CT->CG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:13:0:0:0,0:19,24:0,0:3,3 55:31:0:0:0,0:19,38:5,8:0,0 chr2 16020 . T G . QSS_ref NT=het;QSS=20;QSS_NT=9;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:4:0:0:2,2:0,0:0,0:26,26 52:18:0:0:0,0:0,0:6,6:28,28 chr2 16060 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:1,1:0,0:0,0:31,31 46:2:0:0:0,0:0,0:2,2:42,42 chr2 16107 . A T . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:23,23:0,0:1,1:0,0 45:0:0:0:42,42:0,0:0,0:3,3 chr2 16129 . G A,T . QSS_ref NT=het;QSS=23;QSS_NT=23;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:4,4:0,0:16,16:0,0 46:0:0:0:0,0:0,0:44,44:2,2 chr2 16232 . A C,T . QSS_ref NT=het;QSS=18;QSS_NT=18;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:27,27:3,3:0,0:0,0 37:0:0:0:28,28:0,0:0,0:9,9 chr2 16349 . C G,T . QSS_ref NT=het;QSS=154;QSS_NT=51;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:22,22:0,0:5,5 36:0:0:0:0,0:31,31:5,5:0,0 chr2 16418 . T A . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:3:0:0:0,0:0,0:0,0:24,24 49:1:0:0:1,1:0,0:0,0:47,47 chr2 16433 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:4:0:0:3,3:21,21:0,0:0,0 44:2:0:0:0,0:41,41:1,1:0,0 chr2 16521 . C G . BCNoise;QSS_ref NT=ref;QSS=12;QSS_NT=12;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:12:0:0:0,0:19,24:0,0:0,0 46:23:0:0:0,0:22,23:1,1:0,0 chr2 16574 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:3:0:0:0,0:0,0:16,21:4,4 42:6:0:0:0,0:0,0:36,36:0,0 chr2 16605 . G C,T . QSS_ref NT=het;QSS=207;QSS_NT=69;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 17:1:0:0:0,0:0,0:7,14:9,9 35:0:0:0:0,0:6,6:29,29:0,0 chr2 16706 . A T . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:29,30:0,0:1,1:0,0 49:0:0:0:48,48:0,0:0,0:1,1 chr2 16725 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:1,1:0,0:32,32 49:0:0:0:0,0:0,0:1,1:48,48 chr2 16741 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:33,33:2,2 51:0:0:0:4,4:0,0:47,47:0,0 chr2 16807 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:4,4:0,0:0,0:30,30 56:0:0:0:0,0:1,1:0,0:55,55 chr2 16909 . C A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:2,2:32,32:0,0:0,0 48:0:0:0:0,0:43,43:5,5:0,0 chr2 17092 . T A . QSS_ref NT=conflict;QSS=7;QSS_NT=0;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 6:1:0:0:0,0:0,0:0,3:5,14 53:4:0:0:8,8:0,0:0,0:41,41 chr2 17153 . T G . QSS_ref;BCNoise NT=conflict;QSS=8;QSS_NT=0;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 15:6:0:0:0,2:0,0:0,0:9,11 53:21:0:0:0,1:0,0:2,2:30,31 chr2 17159 . G C . BCNoise;QSS_ref NT=ref;QSS=8;QSS_NT=7;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 15:6:0:0:0,0:0,0:9,13:0,0 54:23:0:0:0,0:1,1:30,32:0,0 chr2 17191 . T . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=TT->TT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:2:0:0:0,0:0,0:0,0:18,20 46:7:0:0:2,2:0,0:0,0:37,38 chr2 17258 . T . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=TT->TT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:0,0:30,30 38:0:0:0:2,2:0,0:0,0:36,36 chr2 17287 . A G,T . QSS_ref NT=het;QSS=187;QSS_NT=54;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:24,24:0,0:7,7:0,0 40:0:0:0:35,35:0,0:0,0:5,5 chr2 17329 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:2,2:25,25 34:0:0:0:0,0:0,0:3,3:31,31 chr2 17362 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:24,24:4,4 39:0:0:0:1,1:0,0:38,38:0,0 chr2 17839 . C G,T . QSS_ref NT=het;QSS=173;QSS_NT=55;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:17,17:5,5:0,0 48:0:0:0:0,0:27,27:0,0:21,21 chr2 18077 . A G . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:4:0:0:25,25:0,0:0,0:0,0 55:17:0:0:34,35:0,0:4,7:0,0 chr2 18118 . A C,G . QSS_ref NT=het;QSS=5;QSS_NT=5;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:8:0:0:28,28:0,0:2,2:0,0 45:4:0:0:37,37:4,4:0,0:0,0 chr2 18148 . T C . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:7:0:0:0,0:0,0:0,0:29,29 44:6:0:0:0,0:4,4:0,0:34,34 chr2 18165 . A C . QSS_ref NT=het;QSS=19;QSS_NT=10;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:8:0:0:28,29:0,0:2,2:0,0 45:13:0:0:29,29:3,3:0,0:0,0 chr2 18260 . G C,T . QSS_ref;BCNoise NT=het;QSS=23;QSS_NT=23;SGT=CG->GT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:12:0:0:0,0:2,2:12,12:0,0 58:33:0:0:0,0:0,0:23,24:2,2 chr2 18272 . T C,G . QSS_ref;BCNoise NT=het;QSS=40;QSS_NT=40;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:13:0:0:0,0:0,0:3,3:11,11 56:33:0:0:0,0:2,3:0,0:21,21 chr2 18338 . A C . QSS_ref NT=ref;QSS=13;QSS_NT=13;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:2:0:0:24,24:0,0:0,0:0,0 54:2:0:0:51,51:1,1:0,0:0,0 chr2 18394 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:4,4:23,23:0,0:0,0 45:0:0:0:7,7:38,38:0,0:0,0 chr2 18437 . A G . QSS_ref NT=het;QSS=3;QSS_NT=3;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:19,19:2,2:0,0:0,0 45:0:0:0:42,42:0,0:3,3:0,0 chr2 18474 . G C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:3,3:19,19:0,0 56:0:0:0:0,0:0,0:47,47:9,9 chr2 18612 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:2,2:30,30:0,0 50:0:0:0:0,0:0,0:47,47:3,3 chr2 18682 . G A,T . QSS_ref NT=het;QSS=192;QSS_NT=41;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:6,6:0,0:32,32:0,0 45:0:0:0:0,0:0,0:37,37:8,8 chr2 18761 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:24,24:0,0:0,0:0,0 57:0:0:0:51,51:0,0:6,6:0,0 chr2 18868 . G . . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=GG->GG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:7:0:0:0,0:0,0:24,25:0,0 38:9:0:0:2,2:0,0:27,29:0,0 chr2 18887 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:8:0:0:0,0:0,0:0,0:24,28 35:12:0:0:0,0:1,1:0,0:22,28 chr2 18985 . C G,T . QSS_ref NT=het;QSS=108;QSS_NT=59;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:20,20:8,8:0,0 45:0:0:0:0,0:42,42:0,0:3,3 chr2 19024 . C A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:29,29:0,0:0,0 53:0:0:0:1,1:52,52:0,0:0,0 chr2 19037 . G A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:2,2:0,0:32,32:0,0 55:0:0:0:0,0:4,4:51,51:0,0 chr2 19194 . G A,C . QSS_ref NT=het;QSS=279;QSS_NT=55;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:7,7:0,0:23,23:0,0 39:0:0:0:0,0:12,12:27,27:0,0 chr2 19252 . C A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 19:0:0:0:0,0:14,20:5,5:0,0 34:0:0:0:8,8:26,26:0,0:0,0 chr2 19527 . T A,G . QSS_ref NT=het;QSS=52;QSS_NT=35;SGT=GT->AT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:6,6:31,32 41:0:0:0:3,3:0,0:0,0:38,38 chr2 19537 . G A . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:0,0:0,0:42,42:0,0 43:0:0:0:5,5:0,0:38,38:0,0 chr2 19610 . A G,T . QSS_ref NT=het;QSS=357;QSS_NT=61;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:22,22:0,0:0,0:11,11 46:0:0:0:32,32:0,0:14,14:0,0 chr2 19811 . T C . QSS_ref NT=ref;QSS=7;QSS_NT=6;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 7:0:0:0:0,0:0,0:0,0:7,18 50:0:0:0:0,0:1,1:0,0:49,49 chr2 19816 . A C . QSS_ref NT=conflict;QSS=7;QSS_NT=0;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 8:0:0:0:8,15:0,0:0,3:0,0 49:0:0:0:45,45:4,4:0,0:0,0 chr2 19871 . T A . QSS_ref NT=ref;QSS=2;QSS_NT=1;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 19:0:0:0:0,0:1,1:0,0:18,19 48:0:0:0:4,4:0,0:0,0:44,44 chr2 20030 . G C . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:31,31:1,1 52:0:0:0:0,0:5,5:47,47:0,0 chr2 20080 . A C,G . QSS_ref NT=het;QSS=105;QSS_NT=23;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:35,35:0,0:6,6:0,0 54:0:0:0:50,50:4,4:0,0:0,0 chr2 20207 . C A,G . QSS_ref NT=het;QSS=90;QSS_NT=49;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:8:0:0:0,0:13,18:3,4:0,0 53:11:0:0:5,6:37,37:0,0:0,0 chr2 20258 . G A . QSS_ref NT=ref;QSS=8;QSS_NT=8;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 13:3:0:0:0,0:0,0:10,18:0,0 49:5:0:0:2,2:0,0:42,42:0,0 chr2 20406 . A C,T . QSS_ref NT=het;QSS=53;QSS_NT=38;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:21,21:3,3:0,0:0,0 54:0:0:0:42,42:0,0:0,0:12,12 chr2 20488 . T G . QSS_ref NT=het;QSS=4;QSS_NT=3;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:2,2:0,0:24,24 41:0:0:0:0,0:0,0:4,4:37,37 chr2 20599 . C A,G . QSS_ref NT=het;QSS=79;QSS_NT=28;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:4,4:28,28:0,0:0,0 51:0:0:0:0,0:44,44:7,7:0,0 chr2 20661 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:0,0:37,37 51:0:0:0:0,0:2,2:0,0:49,49 chr2 20732 . G A,T . QSS_ref NT=het;QSS=15;QSS_NT=14;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:29,29:2,2 55:0:0:0:6,6:0,0:49,49:0,0 chr2 20779 . C A . PASS NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:27,27:0,0:0,0 47:0:0:0:1,1:46,46:0,0:0,0 chr2 20782 . A G . QSS_ref NT=het;QSS=19;QSS_NT=13;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:25,25:2,2:0,0:0,0 42:0:0:0:35,35:0,0:7,7:0,0 chr2 20912 . A G . PASS NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:32,32:0,0:0,0:0,0 47:0:0:0:46,46:0,0:1,1:0,0 chr2 20920 . A C . PASS NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:33,33:0,0:0,0:0,0 49:0:0:0:44,44:5,5:0,0:0,0 chr2 20929 . C G,T . QSS_ref NT=het;QSS=235;QSS_NT=45;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:26,26:0,0:7,7 45:0:0:0:0,0:37,37:8,8:0,0 chr2 21021 . T A,G . QSS_ref NT=het;QSS=69;QSS_NT=49;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:4,4:0,0:0,0:18,18 56:0:0:0:0,0:0,0:13,13:43,43 chr2 21103 . A G . QSS_ref NT=het;QSS=4;QSS_NT=2;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:32,32:0,0:0,0:2,2 50:0:0:0:48,48:0,0:2,2:0,0 chr2 21139 . A C,T . QSS_ref NT=het;QSS=180;QSS_NT=31;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:31,31:0,0:0,0:6,6 53:0:0:0:46,46:7,7:0,0:0,0 chr2 21230 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:32,32:0,0:0,0:0,0 56:0:0:0:55,55:0,0:0,0:1,1 chr2 21232 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:27,27:0,0:6,6 56:0:0:0:0,0:48,48:0,0:8,8 chr2 21323 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:6,6:27,27:0,0 75:0:0:0:0,0:14,14:61,61:0,0 chr2 21375 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:1,1:27,27:0,0:0,0 50:0:0:0:0,0:50,50:0,0:0,0 chr2 21380 . T C,G . QSS_ref NT=het;QSS=112;QSS_NT=39;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:4,4:0,0:23,23 49:0:0:0:0,0:0,0:4,4:45,45 chr2 21529 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:24,24:0,0:0,0:0,0 46:0:0:0:41,41:5,5:0,0:0,0 chr2 21618 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:4,4:0,0:25,25 65:0:0:0:2,2:0,0:0,0:63,63 chr2 21664 . G A,T . QSS_ref NT=het;QSS=105;QSS_NT=52;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:0,0:17,17:4,4 60:0:0:0:11,11:0,0:49,49:0,0 chr2 21709 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:26,26:0,0:0,0 54:0:0:0:0,0:53,53:0,0:1,1 chr2 21715 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:3,3:24,24:0,0 50:0:0:0:0,0:1,1:49,49:0,0 chr2 21720 . G A . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:26,26:0,0 52:0:0:0:4,4:0,0:48,48:0,0 chr2 21766 . G A,C . QSS_ref NT=het;QSS=20;QSS_NT=20;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:5,5:0,0:29,29:0,0 57:0:0:0:0,0:2,2:55,55:0,0 chr2 21771 . T A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:0,0:34,34 57:0:0:0:2,2:0,0:0,0:55,55 chr2 21814 . T G . QSS_ref NT=het;QSS=3;QSS_NT=3;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:1:0:0:0,0:2,2:0,0:29,29 50:5:0:0:0,0:0,0:2,2:43,43 chr2 21994 . G T . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:6:0:0:1,1:0,0:19,19:0,0 51:5:0:0:0,0:0,0:43,43:3,3 chr2 22015 . C T . QSS_ref NT=ref;QSS=13;QSS_NT=13;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:4:0:0:0,0:24,24:0,0:0,0 53:4:0:0:0,0:48,48:0,0:1,1 chr2 22037 . T A . PASS NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:2:0:0:0,0:0,0:1,1:27,27 46:1:0:0:2,2:0,0:0,0:43,43 chr2 22088 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:30,30:0,0:0,0 54:0:0:0:0,0:51,51:3,3:0,0 chr2 22093 . G C,T . QSS_ref NT=het;QSS=204;QSS_NT=50;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:25,25:6,6 56:0:0:0:0,0:8,8:48,48:0,0 chr2 22164 . C G . QSS_ref NT=het;QSS=22;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:26,26:0,0:2,2 57:0:0:0:0,0:48,48:9,9:0,0 chr2 22243 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:29,29:0,0 45:0:0:0:0,0:0,0:35,35:10,10 chr2 22298 . G C . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:29,29:0,0 49:0:0:0:0,0:7,7:42,42:0,0 chr2 22383 . C T . QSS_ref NT=het;QSS=3;QSS_NT=3;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:1:0:0:0,0:37,37:0,0:3,3 44:0:0:0:2,2:42,42:0,0:0,0 chr2 22420 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:3:0:0:30,30:6,6:0,0:0,0 51:8:0:0:42,42:0,0:1,1:0,0 chr2 22505 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:6:0:0:2,2:26,27:0,0:0,0 46:16:0:0:5,7:25,25:0,0:0,0 chr2 22565 . C A,T . QSS_ref NT=het;QSS=330;QSS_NT=55;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:1:0:0:0,0:25,25:0,0:8,8 48:0:0:0:11,11:37,37:0,0:0,0 chr2 22670 . G C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:1,1:29,29:0,0 40:0:0:0:0,0:0,0:40,40:0,0 chr2 22680 . C G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:23,23:6,6:0,0 48:0:0:0:0,0:46,46:0,0:2,2 chr2 22728 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:26,26:0,0 52:0:0:0:1,1:0,0:51,51:0,0 chr2 22746 . C A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:1,1:26,26:0,0:0,0 54:0:0:0:0,0:54,54:0,0:0,0 chr2 22838 . A G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:26,26:0,0:1,1:0,0 58:0:0:0:58,58:0,0:0,0:0,0 chr2 22904 . C A . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:29,29:0,0:2,2 63:0:0:0:6,6:57,57:0,0:0,0 chr2 22941 . C A . QSS_ref NT=het;QSS=10;QSS_NT=10;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:13,13:21,21:0,0:0,0 58:0:0:0:0,0:58,58:0,0:0,0 chr2 23034 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:1,1:27,27:0,0 57:0:0:0:0,0:0,0:57,57:0,0 chr2 23066 . C A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:1,1:28,28:0,0:0,0 53:0:0:0:0,0:53,53:0,0:0,0 chr2 23088 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:4,4:27,27:0,0:0,0 47:0:0:0:0,0:47,47:0,0:0,0 chr2 23108 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:24,24:0,0:6,6 58:0:0:0:0,0:58,58:0,0:0,0 chr2 23209 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:34,34:0,0:4,4 198:0:0:0:0,0:198,352:0,0:0,0 chr2 23231 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:8,8:28,28:0,0:0,0 193:0:0:0:0,0:193,334:0,0:0,0 chr2 23312 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:37,37:0,0:2,2:0,0 223:0:0:0:223,313:0,0:0,0:0,0 chr2 23415 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:25,25:0,0:1,1 272:0:0:0:0,0:272,291:0,0:0,0 chr2 23467 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:4,4:0,0:0,0:22,22 291:0:0:0:0,0:0,0:0,0:291,296 chr2 23534 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:28,28:0,0:1,1:0,0 321:0:0:0:321,321:0,0:0,0:0,0 chr2 23559 . T A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:1,1:0,0:0,0:23,23 303:0:0:0:0,0:0,0:0,0:303,303 chr2 23570 . T A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:1,1:0,0:0,0:24,24 302:0:0:0:0,0:0,0:0,0:302,302 chr2 23603 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:4,4:25,25:0,0:0,0 306:0:0:0:0,0:306,306:0,0:0,0 chr2 23670 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:6,6:29,29:0,0 290:0:0:0:0,0:0,0:290,292:0,0 chr2 23786 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:5,5:25,25:0,0 311:0:0:0:0,0:0,0:311,313:0,0 chr2 23830 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:29,29:0,0:4,4 287:0:0:0:0,0:287,289:0,0:0,0 chr2 23939 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:3,3:36,36:0,0:0,0 296:0:0:0:0,0:296,298:0,0:0,0 chr2 23973 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:29,29:0,0:1,1:0,0 290:0:0:0:290,292:0,0:0,0:0,0 chr2 23975 . T A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:1,1:0,0:0,0:29,29 287:0:0:0:0,0:0,0:0,0:287,289 chr2 23996 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:6,6:0,0:23,23 295:0:0:0:0,0:0,0:0,0:295,297 chr2 24078 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:29,29:0,0:2,2 331:0:0:0:0,0:331,337:0,0:0,0 chr2 24117 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:3,3:0,0:0,0:34,34 302:0:0:0:0,0:0,0:0,0:302,308 chr2 24164 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:3,3:0,0:0,0:32,32 310:0:0:0:0,0:0,0:0,0:310,316 chr2 24211 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:8,8:0,0:24,24:0,0 316:0:0:0:0,0:0,0:316,320:0,0 chr2 24268 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:23,23:2,2 283:0:0:0:0,0:0,0:283,285:0,0 chr2 24335 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:24,24:3,3:0,0 308:0:0:0:0,0:308,309:0,0:0,0 chr2 24368 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:30,30:0,0:3,3 306:0:0:0:0,0:306,306:0,0:0,0 chr2 24395 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:26,26:0,0:5,5:0,0 308:0:0:0:308,308:0,0:0,0:0,0 chr2 24453 . C A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:1,1:29,29:0,0:0,0 291:0:0:0:0,0:291,291:0,0:0,0 chr2 24493 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:28,28:3,3:0,0:0,0 293:0:0:0:293,299:0,0:0,0:0,0 chr2 24531 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:29,29:1,1 319:0:0:0:0,0:0,0:319,325:0,0 chr2 24577 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:30,30:0,0:2,2 325:0:0:0:0,0:325,330:0,0:0,0 chr2 24618 . A G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:38,38:0,0:1,1:0,0 326:0:0:0:326,326:0,0:0,0:0,0 chr2 24625 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:0,0:2,2:36,36 317:0:0:0:0,0:0,0:0,0:317,317 chr2 24644 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:12,12:0,0:0,0:28,28 325:0:0:0:0,0:0,0:0,0:325,327 chr2 24786 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:19,21:6,6:0,0:0,0 339:0:0:0:339,343:0,0:0,0:0,0 chr2 24850 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:26,26:3,3:0,0 320:0:0:0:0,0:320,322:0,0:0,0 chr2 24879 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:6,6:24,24:0,0 330:0:0:0:0,0:0,0:330,330:0,0 chr2 24932 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:6,6:21,21:0,0:0,0 320:0:0:0:0,0:320,322:0,0:0,0 chr2 25029 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:2,2:0,0:19,19:0,0 288:0:0:0:0,0:0,0:288,290:0,0 chr2 25103 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:9,9:0,0:0,0:28,28 330:0:0:0:0,0:0,0:0,0:330,330 chr2 25190 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:28,32:0,0:0,0:7,7 291:0:0:0:291,295:0,0:0,0:0,0 chr2 25302 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:2,2:19,19:0,0:0,0 302:0:0:0:0,0:302,305:0,0:0,0 chr2 25326 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:0,0:15,15:0,0:5,5 300:0:0:0:0,0:300,304:0,0:0,0 chr2 25395 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:20,20:3,3:0,0 269:0:0:0:0,0:269,272:0,0:0,0 chr2 25425 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:23,23:2,2:0,0:0,0 289:0:0:0:289,291:0,0:0,0:0,0 chr2 25446 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:4,4:0,0:23,23 297:0:0:0:0,0:0,0:0,0:297,299 chr2 25505 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:1,1:0,0:0,0:21,21 319:0:0:0:0,0:0,0:0,0:319,323 chr2 25518 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:0,0:0,0:5,5:15,15 305:0:0:0:0,0:0,0:0,0:305,309 chr2 25599 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:4,4:23,23:0,0:0,0 304:0:0:0:0,0:304,308:0,0:0,0 chr2 25674 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:10,10:26,26:0,0:0,0 303:0:0:0:0,0:303,303:0,0:0,0 chr2 25742 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 19:0:0:0:0,0:0,0:2,2:17,19 290:0:0:0:0,0:0,0:0,0:290,292 chr2 25792 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:17,17:8,8:0,0 300:0:0:0:0,0:300,302:0,0:0,0 chr2 25934 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:24,24:2,2:0,0:0,0 289:0:0:0:289,291:0,0:0,0:0,0 chr2 25954 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:1,1:0,0:25,25 296:0:0:0:0,0:0,0:0,0:296,296 chr2 25975 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:26,26:6,6:0,0:0,0 314:0:0:0:314,314:0,0:0,0:0,0 chr2 26037 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:30,30:0,0:2,2 292:0:0:0:0,0:292,294:0,0:0,0 chr2 26057 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:27,27:6,6:0,0:0,0 288:0:0:0:288,290:0,0:0,0:0,0 chr2 26148 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:28,28:0,0:0,0:7,7 306:0:0:0:306,309:0,0:0,0:0,0 chr2 26217 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:23,23:0,0:3,3 304:0:0:0:0,0:304,308:0,0:0,0 chr2 26260 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:4,4:20,20:0,0 322:0:0:0:0,0:0,0:322,325:0,0 chr2 26319 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:36,36:1,1:0,0 313:0:0:0:0,0:313,313:0,0:0,0 chr2 26358 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:1,1:39,39:0,0:0,0 315:0:0:0:0,0:315,317:0,0:0,0 chr2 26367 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:8,8:0,0:34,34:0,0 314:0:0:0:0,0:0,0:314,316:0,0 chr2 26428 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:5,5:24,24 329:0:0:0:0,0:0,0:0,0:329,333 chr2 26488 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:36,36:0,0:2,2:0,0 339:0:0:0:339,340:0,0:0,0:0,0 chr2 26506 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:22,22:0,0:13,13:0,0 354:0:0:0:354,354:0,0:0,0:0,0 chr2 26570 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:28,28:7,7 334:0:0:0:0,0:0,0:334,336:0,0 chr2 26694 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:22,22:0,0:7,7 299:0:0:0:0,0:299,302:0,0:0,0 chr2 26806 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:34,34:2,2:0,0:0,0 329:0:0:0:329,362:0,0:0,0:0,0 chr2 26823 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:0,0:8,8:0,0:31,31 308:0:0:0:0,0:0,0:0,0:308,345 chr2 26871 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:9,9:28,28:0,0 263:0:0:0:0,0:0,0:263,331:0,0 chr2 26921 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:2,2:31,31:0,0 242:0:0:0:0,0:0,0:242,360:0,0 chr2 27071 . T A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:0,0:31,31 54:0:0:0:2,3:0,0:0,0:52,52 chr2 27072 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:2,2:0,0:29,29 53:0:0:0:0,0:0,0:0,0:53,53 chr2 27120 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:0,0:30,30:8,8 55:0:0:0:0,0:0,0:55,55:0,0 chr2 27165 . C A . QSS_ref NT=het;QSS=16;QSS_NT=16;SGT=AC->CC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:9,9:19,19:0,0:0,0 55:0:0:0:0,0:55,55:0,0:0,0 chr2 27292 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:8,8:0,0:20,20:0,0 54:0:0:0:0,0:0,0:54,54:0,0 chr2 27380 . T C . QSS_ref NT=het;QSS=6;QSS_NT=6;SGT=CT->TT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:9,9:0,0:23,23 53:0:0:0:0,0:0,0:0,0:53,53 chr2 27787 . C A,G . BCNoise;QSS_ref NT=het;QSS=72;QSS_NT=38;SGT=CG->AC;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:11:0:0:0,0:19,24:3,3:0,0 62:25:0:0:5,5:32,47:0,0:0,0 chr2 27855 . G C,T . QSS_ref NT=het;QSS=6;QSS_NT=6;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:5:0:0:0,0:0,0:25,25:2,2 69:9:0:0:0,0:3,3:57,57:0,0 chr2 27873 . G A,T . QSS_ref NT=het;QSS=9;QSS_NT=9;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:3:0:0:3,3:0,0:22,22:0,0 57:5:0:0:0,0:0,0:50,50:2,2 chr2 27907 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:6,6:20,20:0,0 57:0:0:0:0,0:10,10:47,47:0,0 chr2 28081 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:37,37:0,0:0,0 60:0:0:0:0,0:57,57:0,0:3,3 chr2 28111 . C A,G . QSS_ref NT=het;QSS=82;QSS_NT=70;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:13,13:17,17:0,0 58:0:0:0:1,1:57,57:0,0:0,0 chr2 28230 . T A,C . QSS_ref NT=het;QSS=131;QSS_NT=51;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:11:0:0:0,0:4,7:0,0:21,22 60:16:0:0:6,11:0,0:0,0:38,42 chr2 28341 . G T . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:2,2:25,25:0,0 50:0:0:0:0,0:0,0:46,46:4,4 chr2 28381 . G C,T . QSS_ref NT=het;QSS=366;QSS_NT=70;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:11,11:12,12:0,0 46:0:0:0:0,0:0,0:38,38:8,8 chr2 28427 . G A . QSS_ref NT=ref;QSS=13;QSS_NT=13;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:0,0:21,21:0,0 52:0:0:0:5,5:0,0:47,47:0,0 chr2 28477 . A T . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:26,26:0,0:0,0:0,0 61:0:0:0:57,57:0,0:0,0:4,4 chr2 28568 . G C . PASS NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:9:0:0:0,0:0,0:33,35:0,0 62:7:0:0:0,0:3,3:52,52:0,0 chr2 28635 . C T . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:8:0:0:0,0:18,20:0,0:0,0 47:7:0:0:0,0:37,37:0,0:3,3 chr2 28644 . T G . PASS NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:5:0:0:0,0:0,0:0,0:18,18 40:5:0:0:0,0:0,0:6,6:29,29 chr2 28670 . C . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CC->CC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:4:0:0:0,0:23,23:0,0:0,0 37:1:0:0:2,2:34,34:0,0:0,0 chr2 28710 . T G . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:0,0:34,34 44:0:0:0:0,0:0,0:8,8:36,36 chr2 28777 . C G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:31,31:0,0:0,0 57:0:0:0:0,0:52,52:5,5:0,0 chr2 28830 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:24,24:0,0:0,0 57:0:0:0:0,0:55,55:2,2:0,0 chr2 28998 . A G . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:34,34:0,0:0,0:0,0 43:0:0:0:42,42:0,0:1,1:0,0 chr2 29027 . G C,T . QSS_ref NT=het;QSS=159;QSS_NT=60;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:25,25:10,10 38:0:0:0:0,0:4,4:34,34:0,0 chr2 29079 . G C,T . QSS_ref NT=het;QSS=62;QSS_NT=33;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:4,4:27,27:0,0 44:0:0:0:0,0:0,0:41,41:3,3 chr2 29157 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:1,1:37,37:0,0 48:0:0:0:0,0:4,4:44,44:0,0 chr2 29167 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:2,2:0,0:33,33 46:0:0:0:0,0:3,3:0,0:43,43 chr2 29202 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:5,5:0,0:0,0:26,26 52:0:0:0:0,0:0,0:8,8:44,44 chr2 29245 . T G . PASS NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:0,0:29,29 56:0:0:0:0,0:0,0:1,1:55,55 chr2 29253 . A C,G . QSS_ref NT=het;QSS=309;QSS_NT=57;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:21,21:0,0:8,8:0,0 53:0:0:0:39,39:14,14:0,0:0,0 chr2 29360 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:8,8:22,22 46:0:0:0:7,7:0,0:0,0:39,39 chr2 29442 . A G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:30,30:0,0:1,1:0,0 46:0:0:0:43,43:0,0:3,3:0,0 chr2 29484 . G A . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:35,35:0,0 50:0:0:0:12,12:0,0:38,38:0,0 chr2 29585 . C A . PASS NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:31,31:0,0:0,0 62:0:0:0:2,2:60,60:0,0:0,0 chr2 29592 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:21,21:11,11:0,0 60:0:0:0:0,0:43,43:17,17:0,0 chr2 29690 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:37,37:0,0:0,0 60:0:0:0:0,0:54,54:6,6:0,0 chr2 29745 . T G . PASS NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:0,0:28,28 51:0:0:0:0,0:0,0:3,3:48,48 chr2 29771 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:4,4:22,22:0,0:0,0 50:0:0:0:1,1:49,49:0,0:0,0 chr2 29816 . G C . PASS NT=ref;QSS=33;QSS_NT=33;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:24,24:0,0 50:0:0:0:0,0:16,16:34,34:0,0 chr2 29876 . T A,C . QSS_ref NT=het;QSS=15;QSS_NT=14;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:2,2:0,0:0,0:26,26 51:0:0:0:0,0:4,4:0,0:47,47 chr2 29889 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:1,1:0,0:0,0:29,29 49:0:0:0:0,0:2,2:0,0:47,47 chr2 29907 . G A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:4,4:29,29:0,0 54:0:0:0:7,7:0,0:47,47:0,0 chr2 29998 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:0,0:0,0:38,38:2,2 52:0:0:0:1,1:0,0:51,51:0,0 chr2 30019 . C G,T . QSS_ref NT=het;QSS=47;QSS_NT=7;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:34,34:0,0:3,3 53:0:0:0:0,0:49,49:4,4:0,0 chr2 30027 . A G . PASS NT=ref;QSS=28;QSS_NT=28;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:34,34:0,0:0,0:0,0 50:0:0:0:42,42:0,0:8,8:0,0 chr2 30098 . C G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:26,26:0,0:0,0 42:0:0:0:0,0:37,37:5,5:0,0 chr2 30167 . G A,T . QSS_ref NT=het;QSS=165;QSS_NT=41;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:24,24:5,5 52:0:0:0:7,7:0,0:45,45:0,0 chr2 30234 . A C,G . QSS_ref NT=het;QSS=137;QSS_NT=41;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:3:0:0:24,24:5,5:0,0:0,0 43:1:0:0:37,37:0,0:5,5:0,0 chr2 30274 . G C . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:6:0:0:0,0:0,0:27,27:0,0 49:9:0:0:0,0:3,3:37,37:0,0 chr2 30296 . A C,G . QSS_ref NT=het;QSS=225;QSS_NT=54;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:7:0:0:19,19:6,6:0,0:0,0 49:14:0:0:28,30:0,0:7,8:0,0 chr2 30387 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:25,25:0,0 38:6:0:0:5,5:0,0:27,27:0,0 chr2 30450 . T C . PASS NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:0,0:30,30 56:0:0:0:0,0:2,2:0,0:54,54 chr2 30464 . T A,C . QSS_ref NT=het;QSS=188;QSS_NT=51;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:6,6:0,0:24,24 60:0:0:0:9,9:0,0:0,0:51,51 chr2 30630 . C G . PASS NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:30,30:0,0:0,0 50:0:0:0:0,0:42,42:8,8:0,0 chr2 30691 . G C . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:2:0:0:0,0:0,0:24,24:0,0 47:1:0:0:0,0:1,1:45,45:0,0 chr2 30763 . G A . QSS_ref;BCNoise NT=het;QSS=24;QSS_NT=18;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:9:0:0:0,0:0,0:22,23:2,2 65:36:0:0:8,11:0,0:21,40:0,0 chr2 30824 . G C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:3:0:0:0,0:0,0:25,25:7,7 61:19:0:0:0,0:11,11:31,31:0,0 chr2 31108 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 45:0:0:0:0,0:38,38:0,0:7,7 52:0:0:0:0,0:47,47:0,0:5,5 chr2 31167 . A G,T . QSS_ref NT=het;QSS=32;QSS_NT=27;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:31,31:0,0:0,0:4,4 50:0:0:0:47,47:0,0:3,3:0,0 chr2 31183 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:29,29:0,0:0,0 48:0:0:0:0,0:44,44:4,4:0,0 chr2 31227 . A T . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:24,24:0,0:2,2:0,0 57:0:0:0:48,48:0,0:0,0:9,9 chr2 31252 . G A . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:28,28:1,1 50:0:0:0:5,5:0,0:45,45:0,0 chr2 31296 . G A,T . QSS_ref NT=het;QSS=159;QSS_NT=35;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:30,30:5,5 62:0:0:0:9,9:0,0:53,53:0,0 chr2 31353 . A G,T . QSS_ref NT=het;QSS=502;QSS_NT=68;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:21,21:0,0:0,0:14,14 43:0:0:0:30,30:0,0:13,13:0,0 chr2 31493 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:1,1:30,30:0,0:0,0 49:0:0:0:0,0:47,47:2,2:0,0 chr2 31528 . C A,T . QSS_ref NT=het;QSS=143;QSS_NT=43;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:25,25:0,0:6,6 59:0:0:0:13,13:46,46:0,0:0,0 chr2 31658 . C T . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:37,37:0,0:0,0 63:0:0:0:0,0:57,57:0,0:6,6 chr2 31769 . T . . QSS_ref;BCNoise NT=ref;QSS=1;QSS_NT=1;SGT=TT->TT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:13:0:0:0,0:0,0:0,0:19,19 53:30:0:0:0,0:0,0:2,3:21,27 chr2 31800 . T A,G . QSS_ref NT=het;QSS=234;QSS_NT=61;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:6:0:0:0,0:0,0:9,10:17,17 53:21:0:0:9,9:0,0:0,0:23,24 chr2 31909 . C A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:0,0:41,41:1,1:0,0 56:0:0:0:1,1:55,55:0,0:0,0 chr2 31958 . G C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:0,0:3,3:38,38:0,0 55:0:0:0:0,0:0,0:48,48:7,7 chr2 32078 . A C,G . QSS_ref NT=het;QSS=9;QSS_NT=9;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:25,25:3,3:0,0:0,0 50:0:0:0:48,48:0,0:2,2:0,0 chr2 32098 . T A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:0,0:26,26 50:0:0:0:0,0:1,1:0,0:49,49 chr2 32143 . C A,G . QSS_ref NT=het;QSS=147;QSS_NT=53;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:21,21:5,5:0,0 48:2:0:0:5,5:41,41:0,0:0,0 chr2 32177 . C T . PASS NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:3:0:0:0,0:30,30:0,0:0,0 50:3:0:0:0,0:43,43:0,0:4,4 chr2 32263 . A G . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:11:0:0:22,24:0,0:0,0:0,1 47:12:0:0:32,33:0,0:3,3:0,0 chr2 32426 . A C,G . QSS_ref NT=het;QSS=13;QSS_NT=13;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:28,28:0,0:10,10:0,0 47:0:0:0:46,46:1,1:0,0:0,0 chr2 32491 . T G . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:0,0:24,24 47:0:0:0:0,0:0,0:2,2:45,45 chr2 32514 . A C . QSS_ref NT=het;QSS=2;QSS_NT=2;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:25,25:0,0:0,0:2,2 49:0:0:0:43,43:6,6:0,0:0,0 chr2 32578 . C G,T . QSS_ref NT=het;QSS=73;QSS_NT=31;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:24,24:0,0:3,3 42:0:0:0:0,0:31,31:11,11:0,0 chr2 32738 . A T . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:1:0:0:30,30:0,0:0,0:0,0 54:4:0:0:49,49:0,0:0,0:1,1 chr2 32776 . T C . PASS NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:3:0:0:0,0:0,0:0,0:32,32 52:9:0:0:0,0:1,1:0,0:42,43 chr2 32848 . C A . QSS_ref NT=ref;QSS=10;QSS_NT=10;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 43:3:0:0:0,0:40,40:0,0:0,0 34:2:0:0:5,5:27,27:0,0:0,0 chr2 32960 . C T . PASS NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:1,1:27,27:0,0:0,0 54:0:0:0:0,0:52,52:0,0:2,2 chr2 32980 . A G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:31,31:0,0:0,0:2,2 58:0:0:0:54,54:0,0:4,4:0,0 chr2 33008 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:35,35:0,0:1,1 51:0:0:0:0,0:50,50:0,0:1,1 chr2 33024 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:11,11:0,0:24,24 50:0:0:0:0,0:2,2:0,0:48,48 chr2 33076 . G T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:23,23:0,0 48:0:0:0:0,0:0,0:41,41:7,7 chr2 33141 . A . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AA->AA;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:24,24:0,0:0,0:0,0 44:0:0:0:42,42:0,0:0,0:2,2 chr2 33205 . G A,C . QSS_ref NT=het;QSS=232;QSS_NT=49;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:7,7:0,0:24,24:0,0 61:0:0:0:0,0:9,9:52,52:0,0 chr2 33319 . C G . PASS NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:6:0:0:0,0:30,30:0,0:0,0 50:16:0:0:0,0:33,33:1,1:0,0 chr2 33327 . T A,G . QSS_ref NT=het;QSS=117;QSS_NT=56;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:7:0:0:9,9:0,0:0,0:22,22 50:18:0:0:0,0:0,0:4,4:28,28 chr2 33492 . A C,T . QSS_ref NT=het;QSS=442;QSS_NT=63;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:21,21:11,11:0,0:0,0 55:0:0:0:35,35:0,0:0,0:20,20 chr2 33664 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:26,26:1,1:0,0 44:0:0:0:0,0:42,42:0,0:2,2 chr2 33707 . G A . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:29,29:0,0 44:0:0:0:6,6:0,0:38,38:0,0 chr2 33730 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:4,4:32,32:0,0:0,0 41:0:0:0:4,4:37,37:0,0:0,0 chr2 33902 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:27,27:0,0:0,0 44:0:0:0:0,0:38,38:0,0:6,6 chr2 33973 . T G . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:2,2:0,0:25,25 54:0:0:0:0,0:0,0:7,7:47,47 chr2 34018 . C A,G . QSS_ref NT=het;QSS=50;QSS_NT=39;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:5,5:25,25:0,0:0,0 55:0:0:0:0,0:52,52:3,3:0,0 chr2 34049 . G A . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:27,27:1,1 52:0:0:0:2,2:0,0:50,50:0,0 chr2 34109 . G C,T . QSS_ref NT=het;QSS=137;QSS_NT=51;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:2:0:0:0,0:0,0:22,22:5,5 40:0:0:0:0,0:4,4:36,36:0,0 chr2 34135 . T C . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:3:0:0:0,0:0,0:0,0:25,25 41:4:0:0:0,0:3,3:0,0:34,34 chr2 34159 . A G . PASS NT=ref;QSS=16;QSS_NT=16;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:6:0:0:26,27:0,0:0,0:0,0 41:11:0:0:28,31:0,0:2,2:0,0 chr2 34160 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:6:0:0:5,5:0,0:21,22:0,0 41:11:0:0:3,3:0,0:27,30:0,0 chr2 34309 . T A,C . BCNoise;QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:13:0:0:0,0:3,3:0,0:13,18 55:27:0:0:2,2:0,0:0,0:26,36 chr2 34339 . T C,G . QSS_ref NT=het;QSS=103;QSS_NT=61;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:8:0:0:0,0:0,0:4,5:14,14 56:18:0:0:0,0:9,10:0,0:29,30 chr2 34415 . T A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:1:0:0:1,1:0,0:0,0:29,29 50:0:0:0:3,3:0,0:0,0:47,47 chr2 34431 . G C . PASS NT=ref;QSS=18;QSS_NT=18;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:30,30:0,0 48:0:0:0:0,0:5,5:43,43:0,0 chr2 34453 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:24,24:0,0:0,0:6,6 44:0:0:0:44,44:0,0:0,0:0,0 chr2 34564 . A C,G . QSS_ref NT=het;QSS=12;QSS_NT=5;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:40,40:0,0:2,2:0,0 39:0:0:0:36,36:3,3:0,0:0,0 chr2 34580 . C G,T . QSS_ref NT=het;QSS=269;QSS_NT=57;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:0,0:29,29:0,0:13,13 37:0:0:0:0,0:28,28:9,9:0,0 chr2 34684 . C G . PASS NT=ref;QSS=20;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:38,38:0,0:0,0 60:0:0:0:0,0:59,59:1,1:0,0 chr2 34689 . T A,G . QSS_ref NT=het;QSS=430;QSS_NT=62;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:0,0:11,11:25,25 57:0:0:0:14,14:0,0:0,0:43,43 chr2 34841 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:24,24:0,0:4,4:0,0 47:0:0:0:45,45:2,2:0,0:0,0 chr2 34863 . T G . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:1,1:0,0:0,0:27,27 43:0:0:0:0,0:0,0:2,2:41,41 chr2 34871 . C A . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:28,28:0,0:1,1 42:0:0:0:5,5:37,37:0,0:0,0 chr2 34930 . C A,T . QSS_ref NT=het;QSS=132;QSS_NT=35;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:27,27:0,0:5,5 49:0:0:0:6,6:43,43:0,0:0,0 chr2 35038 . T A,C . QSS_ref NT=het;QSS=67;QSS_NT=4;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:3,3:0,0:0,0:38,38 48:0:0:0:0,0:9,9:0,0:39,39 chr2 35098 . T A,C . QSS_ref NT=het;QSS=159;QSS_NT=3;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 48:0:0:0:0,0:5,5:0,0:43,43 49:0:0:0:8,8:0,0:0,0:41,41 chr2 35120 . C A,G . QSS_ref NT=het;QSS=92;QSS_NT=45;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 50:0:0:0:0,0:37,37:13,13:0,0 47:0:0:0:4,4:43,43:0,0:0,0 chr2 35153 . G T . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 46:0:0:0:0,0:0,0:46,46:0,0 45:0:0:0:0,0:0,0:36,36:9,9 chr2 35246 . T G . PASS NT=ref;QSS=34;QSS_NT=34;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:0,0:37,37 43:0:0:0:0,0:0,0:10,10:33,33 chr2 35375 . C A,G . QSS_ref NT=het;QSS=77;QSS_NT=27;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:28,28:4,4:0,0 45:0:0:0:9,9:36,36:0,0:0,0 chr2 35429 . T A,C . QSS_ref NT=het;QSS=53;QSS_NT=36;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:4,4:0,0:0,0:24,24 42:0:0:0:0,0:3,3:0,0:39,39 chr2 35470 . C G . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:27,27:0,0:0,0 43:0:0:0:0,0:40,40:3,3:0,0 chr2 35491 . A . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AA->AA;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:24,24:1,1:0,0:0,0 38:0:0:0:36,36:0,0:0,0:2,2 chr2 35520 . G C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:9,9:18,18:0,0 37:0:0:0:0,0:0,0:30,30:7,7 chr2 35607 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:5,5:0,0:33,33 50:0:0:0:0,0:0,0:1,1:49,49 chr2 35664 . T C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:0,0:0,0:12,12:27,27 50:0:0:0:0,0:8,8:0,0:42,42 chr2 35746 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:0,0:31,31 48:0:0:0:0,0:0,0:5,5:43,43 chr2 35779 . C A,T . QSS_ref NT=het;QSS=5;QSS_NT=5;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:26,26:0,0:2,2 49:0:0:0:7,7:42,42:0,0:0,0 chr2 35836 . G A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:8,8:0,0:25,25:0,0 53:0:0:0:0,0:7,7:46,46:0,0 chr2 35919 . G C . PASS NT=ref;QSS=35;QSS_NT=35;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:32,32:0,0 65:0:0:0:0,0:16,16:49,49:0,0 chr2 35998 . T C,G . QSS_ref NT=het;QSS=74;QSS_NT=45;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:3,3:0,0:24,24 53:0:0:0:0,0:0,0:10,10:43,43 chr2 36150 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:22,22:0,0:0,0 58:0:0:0:0,0:54,54:0,0:4,4 chr2 36257 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:24,24:5,5 48:0:0:0:0,0:0,0:42,42:6,6 chr2 36290 . T C . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:0,0:23,23 41:0:0:0:0,0:6,6:0,0:35,35 chr2 36331 . C T . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:28,28:0,0:0,0 48:0:0:0:0,0:47,47:0,0:1,1 chr2 36352 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:2,2:0,0:23,23 53:0:0:0:0,0:3,3:0,0:50,50 chr2 36408 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:0,0:6,6:0,0:36,36 68:0:0:0:0,0:1,1:0,0:67,67 chr2 36417 . G C . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 43:0:0:0:0,0:0,0:43,43:0,0 63:0:0:0:0,0:13,13:50,50:0,0 chr2 36483 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:2,2:0,0:0,0:40,40 51:0:0:0:1,1:0,0:0,0:50,50 chr2 36491 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:0,0:0,0:35,35:6,6 49:0:0:0:0,0:0,0:39,39:10,10 chr2 36567 . G C . QSS_ref NT=het;QSS=14;QSS_NT=13;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:6:0:0:0,0:0,0:24,24:2,2 52:4:0:0:0,0:2,2:46,46:0,0 chr2 36578 . A G,T . QSS_ref NT=het;QSS=185;QSS_NT=56;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:6:0:0:18,18:0,0:0,0:6,6 50:8:0:0:33,33:0,0:9,9:0,0 chr2 36641 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:7:0:0:16,16:0,0:2,2:0,0 58:4:0:0:51,51:3,3:0,0:0,0 chr2 36691 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:2,2:0,0:21,21:0,0 51:1:0:0:3,3:0,0:47,47:0,0 chr2 36725 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:24,24:0,0:2,2 53:0:0:0:0,0:48,48:0,0:5,5 chr2 36769 . A C,T . QSS_ref NT=het;QSS=43;QSS_NT=21;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:35,35:3,3:0,0:0,0 54:0:0:0:48,48:0,0:0,0:6,6 chr2 36818 . A G,T . QSS_ref NT=het;QSS=236;QSS_NT=57;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:24,24:0,0:0,0:8,8 58:2:0:0:44,44:0,0:12,12:0,0 chr2 36961 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:2:0:0:0,0:0,0:6,6:31,31 49:4:0:0:0,0:0,0:8,8:37,37 chr2 37011 . A C,T . QSS_ref NT=het;QSS=267;QSS_NT=47;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:30,30:0,0:0,0:8,8 45:0:0:0:38,38:7,7:0,0:0,0 chr2 37091 . G A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:2,2:24,24:0,0 65:0:0:0:3,3:0,0:62,62:0,0 chr2 37117 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:4,4:24,24:0,0:0,0 61:0:0:0:0,0:59,59:0,0:2,2 chr2 37130 . T C . PASS NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:0,0:27,27 63:0:0:0:0,0:4,4:0,0:59,59 chr2 37178 . T G . QSS_ref NT=het;QSS=16;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:2,2:0,0:0,0:24,24 55:0:0:0:0,0:0,0:3,3:52,52 chr2 37209 . A C,T . QSS_ref NT=het;QSS=98;QSS_NT=51;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:17,17:4,4:0,0:0,0 49:0:0:0:41,41:0,0:0,0:8,8 chr2 37278 . T A,G . QSS_ref NT=het;QSS=329;QSS_NT=60;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:10,10:0,0:0,0:22,22 41:0:0:0:0,0:0,0:10,10:31,31 chr2 37417 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:36,36:1,1:0,0:0,0 53:0:0:0:52,52:0,0:0,0:1,1 chr2 37431 . A C,G . QSS_ref NT=het;QSS=118;QSS_NT=17;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 44:0:0:0:39,39:5,5:0,0:0,0 47:0:0:0:38,38:0,0:9,9:0,0 chr2 37499 . G A,T . QSS_ref NT=het;QSS=189;QSS_NT=52;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:3:0:0:7,7:0,0:28,28:0,0 46:5:0:0:0,0:0,0:36,36:5,5 chr2 37538 . T A . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:10:0:0:0,0:0,0:0,0:18,19 53:13:0:0:5,5:0,0:0,0:35,35 chr2 37563 . A T . BCNoise;QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 12:0:14:0:12,12:0,0:0,0:0,0 31:16:17:0:13,13:0,0:0,0:2,5 chr2 37609 . C G . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:6:0:0:0,0:23,23:0,0:1,1 48:18:0:0:0,0:26,26:4,4:0,0 chr2 37747 . A C . PASS NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:29,29:0,0:0,0:0,0 46:0:0:0:42,42:4,4:0,0:0,0 chr2 37776 . A C . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:31,31:0,0:1,1:0,0 46:0:0:0:43,43:3,3:0,0:0,0 chr2 37816 . A G . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:33,33:0,0:0,0:0,0 40:0:0:0:37,37:0,0:3,3:0,0 chr2 37839 . A C,T . QSS_ref NT=het;QSS=45;QSS_NT=6;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:35,35:3,3:0,0:0,0 44:0:0:0:41,41:0,0:0,0:3,3 chr2 38002 . A C,T . QSS_ref NT=het;QSS=68;QSS_NT=58;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:24,24:9,9:0,0:0,0 47:0:0:0:45,45:0,0:0,0:2,2 chr2 38015 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:0,0:32,32 51:1:0:0:0,0:8,8:0,0:42,42 chr2 38095 . T C . QSS_ref NT=het;QSS=19;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:7:0:0:2,2:0,0:0,0:23,24 52:11:0:0:0,0:5,5:0,0:36,38 chr2 38249 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:3,3:0,0:29,29 45:0:0:0:0,0:0,0:1,1:44,44 chr2 38280 . A G,T . QSS_ref NT=het;QSS=166;QSS_NT=64;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:21,21:0,0:0,0:10,10 52:0:0:0:48,48:0,0:4,4:0,0 chr2 38321 . A G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:32,32:0,0:0,0:0,0 52:0:0:0:42,42:0,0:10,10:0,0 chr2 38384 . C G,T . QSS_ref NT=het;QSS=95;QSS_NT=36;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:24,24:4,4:0,0 50:0:0:0:0,0:43,43:0,0:7,7 chr2 38432 . G A,T . QSS_ref NT=het;QSS=28;QSS_NT=24;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:3,3:0,0:26,26:0,0 53:0:0:0:0,0:0,0:44,44:9,9 chr2 38492 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:24,24:5,5 56:0:0:0:0,0:0,0:49,49:7,7 chr2 38565 . C G . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:23,23:0,0:0,0 52:0:0:0:0,0:49,49:3,3:0,0 chr2 38602 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:26,26:3,3 50:0:0:0:0,0:0,0:43,43:7,7 chr2 38665 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:29,29:0,0:3,3:0,0 50:0:0:0:49,49:0,0:0,0:1,1 chr2 38702 . G A,T . QSS_ref NT=het;QSS=430;QSS_NT=63;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:10,10:0,0:20,20:0,0 49:0:0:0:0,0:0,0:34,34:15,15 chr2 38806 . C G . QSS_ref NT=het;QSS=4;QSS_NT=4;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:26,26:3,3:0,0 51:0:0:0:2,2:49,49:0,0:0,0 chr2 38827 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:29,29:0,0 45:0:0:0:1,1:0,0:44,44:0,0 chr2 38839 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:10,10:26,26:0,0:0,0 45:0:0:0:0,0:28,28:0,0:17,17 chr2 38927 . T A,G . QSS_ref NT=het;QSS=128;QSS_NT=30;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:5,5:0,0:0,0:35,35 54:0:0:0:0,0:0,0:5,5:49,49 chr2 38955 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:34,34:0,0:0,0 53:0:0:0:0,0:49,49:0,0:4,4 chr2 38990 . A G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:30,30:0,0:0,0:3,3 52:0:0:0:44,44:0,0:8,8:0,0 chr2 39037 . A C,G . QSS_ref NT=het;QSS=266;QSS_NT=63;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:19,19:0,0:8,8:0,0 46:0:0:0:27,27:19,19:0,0:0,0 chr2 39152 . G A,T . QSS_ref NT=het;QSS=214;QSS_NT=59;SGT=GT->AG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:17,21:9,9 35:0:0:0:7,7:0,0:28,28:0,0 chr2 39246 . G C,T . QSS_ref NT=het;QSS=135;QSS_NT=53;SGT=CG->GT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 19:0:0:0:0,0:4,4:15,22:0,0 67:0:0:0:0,0:0,0:61,61:6,6 chr2 39294 . G A . QSS_ref NT=conflict;QSS=3070;QSS_NT=0;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:2,2:34,37:0,0 64:0:0:0:2,2:0,0:62,62:0,0 chr2 39324 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:36,36:0,0:0,0:1,1 51:0:0:0:47,47:0,0:4,4:0,0 chr2 39355 . A G . QSS_ref NT=het;QSS=2;QSS_NT=2;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:31,31:0,0:4,4:0,0 54:0:0:0:52,52:2,2:0,0:0,0 chr2 39371 . T A . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:0,0:35,35 56:0:0:0:5,5:0,0:0,0:51,51 chr2 39567 . G A . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:34,34:0,0 73:0:0:0:3,3:0,0:70,70:0,0 chr2 39602 . T G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:0,0:0,0:36,39 72:0:0:0:0,0:0,0:1,1:71,71 chr2 39605 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:2,2:0,0:0,0:33,36 70:0:0:0:0,0:6,6:0,0:64,64 chr2 39635 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:22,26:1,1:0,0:0,0 52:0:0:0:49,49:0,0:3,3:0,0 chr2 39718 . T G . QSS_ref NT=conflict;QSS=3070;QSS_NT=0;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 6:0:0:0:0,0:0,5:0,0:6,12 61:0:0:0:0,0:0,0:11,11:50,50 chr2 39770 . G C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 17:0:0:0:0,0:0,0:17,25:0,0 42:0:0:0:0,0:6,6:36,36:0,0 chr2 39816 . T A,C . QSS_ref NT=het;QSS=421;QSS_NT=71;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:14,14:0,0:0,0:16,16 42:0:0:0:0,0:11,11:0,0:31,31 chr2 39903 . A C . PASS NT=ref;QSS=16;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:5:0:0:22,23:0,0:0,0:1,1 58:16:0:0:36,37:6,6:0,0:0,0 chr2 40006 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:1:0:0:5,5:27,27:0,0:0,0 60:4:0:0:0,0:49,49:0,0:7,7 chr2 40048 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:37,37:0,0 54:0:0:0:2,2:0,0:52,52:0,0 chr2 40052 . A C,G . QSS_ref NT=het;QSS=52;QSS_NT=26;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:31,31:5,5:0,0:0,0 52:0:0:0:49,49:0,0:3,3:0,0 chr2 40095 . A C,T . QSS_ref NT=het;QSS=134;QSS_NT=41;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:30,30:0,0:0,0:5,5 44:0:0:0:38,38:6,6:0,0:0,0 chr2 40131 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:3,3:0,0:27,27 40:0:0:0:0,0:1,1:0,0:39,39 chr2 40140 . C A . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:26,26:0,0:0,0 40:0:0:0:1,1:39,39:0,0:0,0 chr2 40323 . A G,T . QSS_ref NT=het;QSS=77;QSS_NT=49;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:4:0:0:16,16:0,0:3,3:0,0 44:12:0:0:26,26:0,0:0,0:6,6 chr2 40511 . A T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:29,29:0,0:0,0:0,0 50:0:0:0:48,48:0,0:0,0:2,2 chr2 40559 . C A,G . QSS_ref NT=het;QSS=158;QSS_NT=50;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:6,6:28,28:0,0:0,0 53:0:0:0:0,0:48,48:5,5:0,0 chr2 40648 . C G . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:28,28:0,0:0,0 40:0:0:0:0,0:36,36:4,4:0,0 chr2 40731 . T A,G . QSS_ref NT=het;QSS=48;QSS_NT=4;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:0,0:0,0:4,4:35,35 32:0:0:0:7,7:0,0:0,0:25,25 chr2 40773 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:11,11:26,26 41:0:0:0:0,0:0,0:5,5:36,36 chr2 40857 . A C,T . QSS_ref NT=het;QSS=50;QSS_NT=33;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:3:0:0:23,23:3,3:0,0:0,0 55:6:0:0:32,32:0,0:0,0:17,17 chr2 40968 . A C,T . QSS_ref NT=het;QSS=209;QSS_NT=65;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:7:0:0:12,12:6,6:0,0:0,0 46:6:0:0:32,32:0,0:0,0:8,8 chr2 41091 . A C . PASS NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:26,26:0,0:0,0:0,0 37:0:0:0:36,36:1,1:0,0:0,0 chr2 41119 . G A,C . QSS_ref NT=het;QSS=193;QSS_NT=45;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:7,7:0,0:23,23:0,0 41:0:0:0:0,0:15,15:26,26:0,0 chr2 41220 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:1,1:0,0:0,0:28,28 55:0:0:0:0,0:0,0:0,0:55,55 chr2 41250 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:1:0:0:23,23:4,4:0,0:0,0 53:2:0:0:50,50:0,0:1,1:0,0 chr2 41274 . A C,T . QSS_ref NT=het;QSS=125;QSS_NT=43;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:3:0:0:23,23:0,0:0,0:5,5 57:7:0:0:41,41:9,9:0,0:0,0 chr2 41330 . A T . QSS_ref;BCNoise NT=conflict;QSS=2;QSS_NT=0;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:15:0:0:17,20:0,0:1,2:0,0 39:20:0:0:17,19:0,0:0,0:2,7 chr2 41434 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:5,5:32,32 54:0:0:0:0,0:0,0:1,1:53,53 chr2 41444 . A G . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:35,35:0,0:0,0:0,0 56:0:0:0:49,49:0,0:7,7:0,0 chr2 41495 . C A,T . QSS_ref NT=het;QSS=31;QSS_NT=23;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:4:0:0:0,0:27,27:0,0:3,3 53:6:0:0:6,6:41,41:0,0:0,0 chr2 41717 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:4,4:0,0:24,24 59:0:0:0:5,5:0,0:0,0:54,54 chr2 41749 . A G . QSS_ref NT=ref;QSS=12;QSS_NT=11;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:22,22:1,1:0,0:0,0 60:0:0:0:58,58:0,0:2,2:0,0 chr2 41763 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:0,0:25,25 56:0:0:0:0,0:0,0:2,2:54,54 chr2 41775 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:0,0:26,26 55:0:0:0:0,0:4,4:0,0:51,51 chr2 41792 . C A,G . QSS_ref NT=het;QSS=98;QSS_NT=68;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:19,19:13,13:0,0 45:0:0:0:3,3:42,42:0,0:0,0 chr2 41901 . C A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:6,6:21,21:0,0:0,0 47:0:0:0:0,0:36,36:11,11:0,0 chr2 41971 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:5,5:24,24:0,0:0,0 46:0:0:0:0,0:41,41:0,0:5,5 chr2 42002 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:21,21:5,5 48:0:0:0:0,0:0,0:48,48:0,0 chr2 42004 . C A . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:26,26:0,0:0,0 46:0:0:0:6,6:40,40:0,0:0,0 chr2 42040 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:0,0:26,26 46:0:0:0:2,2:0,0:0,0:44,44 chr2 42062 . A G . PASS NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:27,27:0,0:0,0:0,0 44:0:0:0:42,42:0,0:2,2:0,0 chr2 42074 . C G . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:29,29:0,0:0,0 43:0:0:0:0,0:33,33:10,10:0,0 chr2 42177 . A T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:30,30:0,0:0,0:0,0 52:0:0:0:36,36:0,0:0,0:16,16 chr2 42260 . G A . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:34,34:0,0 51:0:0:0:3,3:0,0:48,48:0,0 chr2 42324 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:2,2:0,0:0,0:20,20 37:0:0:0:0,0:0,0:2,2:35,35 chr2 42352 . G T . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:0,0:21,21:0,0 38:4:0:0:0,0:0,0:30,30:4,4 chr2 42466 . G T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:5:0:0:0,0:0,0:27,27:0,0 59:11:0:0:0,0:0,0:44,44:4,5 chr2 42504 . G A,T . QSS_ref NT=het;QSS=189;QSS_NT=53;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:1:0:0:0,0:0,0:18,18:5,5 55:5:0:0:12,12:0,0:38,38:0,0 chr2 42551 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:27,27:0,0 53:0:0:0:8,8:0,0:45,45:0,0 chr2 42575 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:31,31:0,0:0,0:2,2 47:0:0:0:39,39:0,0:0,0:8,8 chr2 42630 . C A,G . QSS_ref NT=het;QSS=229;QSS_NT=54;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:26,26:10,10:0,0 36:0:0:0:6,6:30,30:0,0:0,0 chr2 42722 . A C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:31,31:0,0:1,1:0,0 61:0:0:0:61,61:0,0:0,0:0,0 chr2 42723 . A C,G . QSS_ref NT=het;QSS=20;QSS_NT=16;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:28,28:4,4:0,0:0,0 60:0:0:0:50,50:0,0:10,10:0,0 chr2 42880 . T C,G . QSS_ref NT=het;QSS=93;QSS_NT=23;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:4,4:0,0:30,30 40:0:0:0:0,0:0,0:8,8:32,32 chr2 42934 . G A,C . QSS_ref NT=het;QSS=294;QSS_NT=41;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 44:0:0:0:10,10:0,0:34,34:0,0 51:0:0:0:0,0:8,8:43,43:0,0 chr2 43000 . T C,G . QSS_ref NT=het;QSS=29;QSS_NT=26;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:0,0:4,4:34,34 59:0:0:0:0,0:8,8:0,0:51,51 chr2 43112 . A C,G . QSS_ref NT=het;QSS=14;QSS_NT=11;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:32,32:0,0:3,3:0,0 39:0:0:0:32,32:7,7:0,0:0,0 chr2 43220 . A G . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:25,25:0,0:0,0:0,0 48:0:0:0:45,45:0,0:3,3:0,0 chr2 43232 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:2,2:31,31:0,0:0,0 48:0:0:0:0,0:46,46:0,0:2,2 chr2 43256 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:0,0:40,40:0,0:1,1 47:0:0:0:0,0:45,45:0,0:2,2 chr2 43297 . C A,G . QSS_ref NT=het;QSS=235;QSS_NT=35;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 44:0:0:0:0,0:34,34:10,10:0,0 53:0:0:0:7,7:46,46:0,0:0,0 chr2 43358 . A T . QSS_ref NT=het;QSS=31;QSS_NT=31;SGT=AT->AA;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:17,17:0,0:0,0:11,11 52:0:0:0:52,52:0,0:0,0:0,0 chr2 43368 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:35,35:0,0 49:0:0:0:0,0:0,0:46,46:3,3 chr2 43459 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 52:0:0:0:0,0:51,51:0,0:1,1 49:0:0:0:0,0:49,49:0,0:0,0 chr2 43497 . A G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:32,32:0,0:7,7:0,0 49:0:0:0:45,45:0,0:0,0:4,4 chr2 43569 . C A,G . QSS_ref NT=het;QSS=30;QSS_NT=30;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:5,5:25,25:0,0:0,0 45:0:0:0:0,0:42,42:3,3:0,0 chr2 43680 . T A,G . QSS_ref NT=het;QSS=488;QSS_NT=68;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:12,12:0,0:0,0:21,21 49:0:0:0:0,0:0,0:15,15:34,34 chr2 43983 . T G . PASS NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:0,0:32,32 52:0:0:0:0,0:0,0:2,2:50,50 chr2 44052 . A G . PASS NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:31,31:0,0:0,0:0,0 49:0:0:0:45,45:0,0:4,4:0,0 chr2 44093 . C A,T . QSS_ref NT=het;QSS=13;QSS_NT=12;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:2,2:30,30:0,0:0,0 46:0:0:0:0,0:43,43:0,0:3,3 chr2 44140 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:1,1:0,0:33,33:0,0 40:0:0:0:1,1:0,0:39,39:0,0 chr2 44157 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:4,4:0,0:0,0:25,25 41:0:0:0:0,0:0,0:0,0:41,41 chr2 44161 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:0,0:31,31 41:0:0:0:0,0:0,0:2,2:39,39 chr2 44224 . C T . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:25,25:0,0:0,0 49:0:0:0:0,0:46,46:0,0:3,3 chr2 44304 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:2,2:0,0:0,0:25,25 45:0:0:0:0,0:1,1:0,0:44,44 chr2 44324 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:26,26:0,0 48:0:0:0:0,0:0,0:46,46:2,2 chr2 44345 . T C . QSS_ref NT=het;QSS=3;QSS_NT=3;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:2,2:24,24 45:0:0:0:0,0:5,5:0,0:40,40 chr2 44399 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:22,22:2,2:0,0 55:0:0:0:0,0:51,51:4,4:0,0 chr2 44437 . A C,T . QSS_ref NT=het;QSS=83;QSS_NT=46;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:21,21:3,3:0,0:0,0 58:0:0:0:53,53:0,0:0,0:5,5 chr2 44466 . A C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:19,19:4,4:0,0:0,0 51:0:0:0:49,49:0,0:0,0:2,2 chr2 44519 . C G . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:28,28:0,0:0,0 47:0:0:0:0,0:40,40:7,7:0,0 chr2 44593 . C A,G . QSS_ref NT=het;QSS=22;QSS_NT=22;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:0,0:16,16:4,4:0,0 38:0:0:0:2,2:36,36:0,0:0,0 chr2 44667 . C A . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:27,27:0,0:0,0 48:0:0:0:1,1:47,47:0,0:0,0 chr2 44690 . C A,T . QSS_ref NT=het;QSS=256;QSS_NT=60;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:9,9:21,21:0,0:0,0 56:0:0:0:0,0:49,49:0,0:7,7 chr2 44738 . G A,C . QSS_ref NT=het;QSS=278;QSS_NT=57;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:8,8:0,0:21,21:0,0 59:0:0:0:0,0:9,9:50,50:0,0 chr2 44817 . A G,T . QSS_ref NT=het;QSS=40;QSS_NT=35;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:25,25:0,0:3,3:0,0 49:0:0:0:44,44:0,0:0,0:5,5 chr2 44886 . A C,G . QSS_ref NT=het;QSS=176;QSS_NT=53;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:2:0:0:21,21:5,5:0,0:0,0 46:4:0:0:36,36:0,0:6,6:0,0 chr2 44935 . G A,T . QSS_ref;BCNoise NT=het;QSS=41;QSS_NT=41;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:13:0:0:0,0:0,0:14,14:2,2 61:34:0:0:2,2:0,0:25,25:0,0 chr2 45023 . C A,G . QSS_ref NT=het;QSS=145;QSS_NT=60;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:7:0:0:0,0:15,15:4,4:0,0 61:17:0:0:4,4:40,40:0,0:0,0 chr2 45116 . G A . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:5:0:0:0,0:0,0:16,16:0,0 57:6:0:0:5,5:0,0:46,46:0,0 chr2 45173 . A C,T . QSS_ref NT=het;QSS=18;QSS_NT=18;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:18,18:0,0:0,0:2,2 66:0:0:0:61,61:5,5:0,0:0,0 chr2 45216 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:23,23:0,0:0,0:2,2 70:0:0:0:68,68:0,0:0,0:2,2 chr2 45253 . C A,T . QSS_ref NT=het;QSS=176;QSS_NT=49;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:5,5:23,23:0,0:0,0 71:0:0:0:0,0:61,61:0,0:10,10 chr2 45296 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:29,29:0,0:0,0:3,3 61:0:0:0:51,51:0,0:0,0:10,10 chr2 45340 . C A,T . QSS_ref NT=het;QSS=38;QSS_NT=26;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:3,3:26,26:0,0:0,0 54:0:0:0:0,0:51,51:0,0:3,3 chr2 45360 . G T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:33,33:0,0 56:0:0:0:0,0:0,0:55,55:1,1 chr2 45384 . T C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:4,4:0,0:28,28 45:0:0:0:0,0:0,0:4,4:41,41 chr2 45442 . C T . PASS NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:1,1:32,32:0,0:0,0 51:0:0:0:0,0:48,48:0,0:3,3 chr2 45452 . G A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:2,2:31,31:0,0 47:0:0:0:3,3:0,0:44,44:0,0 chr2 45574 . C A . QSS_ref NT=ref;QSS=4;QSS_NT=3;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:34,34:0,0:2,2 47:0:0:0:6,6:41,41:0,0:0,0 chr2 45636 . T A,G . QSS_ref NT=het;QSS=15;QSS_NT=12;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:0,0:0,0:4,4:35,35 43:0:0:0:2,2:0,0:0,0:41,41 chr2 45650 . G C . QSS_ref NT=het;QSS=4;QSS_NT=3;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:0,0:3,3:37,37:0,0 48:0:0:0:2,2:0,0:46,46:0,0 chr2 45717 . G A . PASS NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:30,30:0,0 45:0:0:0:6,6:0,0:39,39:0,0 chr2 45782 . G A,C . QSS_ref NT=het;QSS=52;QSS_NT=40;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:4,4:0,0:22,22:0,0 41:0:0:0:0,0:3,3:38,38:0,0 chr2 45825 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:0,0:30,30 42:0:0:0:0,0:3,3:0,0:39,39 chr2 45842 . G T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:1,1:30,30:0,0 48:0:0:0:0,0:0,0:46,46:2,2 chr2 45859 . A T . QSS_ref NT=het;QSS=4;QSS_NT=1;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:33,33:2,2:0,0:0,0 44:0:0:0:41,41:0,0:0,0:3,3 chr2 45907 . G A,C . QSS_ref NT=het;QSS=168;QSS_NT=43;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:2:0:0:5,5:0,0:26,26:0,0 47:2:0:0:0,0:6,6:39,39:0,0 chr2 45976 . A G,T . QSS_ref NT=het;QSS=80;QSS_NT=53;SGT=AT->AG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:9:0:0:12,14:0,0:0,0:3,3 54:16:0:0:35,40:0,0:3,3:0,0 chr2 46156 . C T . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:0,0:40,40:2,2:0,0 52:0:0:0:0,0:50,50:0,0:2,2 chr2 46346 . T C . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:0,0:32,32 57:0:0:0:0,0:1,1:0,0:56,56 chr2 46350 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:30,30:2,2 54:0:0:0:0,0:0,0:47,47:7,7 chr2 46392 . C G,T . QSS_ref NT=het;QSS=256;QSS_NT=64;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:22,22:0,0:12,12 51:0:0:0:0,0:44,44:7,7:0,0 chr2 46421 . A T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:30,30:0,0:0,0:0,0 61:0:0:0:49,49:0,0:0,0:12,12 chr2 46474 . G C . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:25,25:0,0 50:0:0:0:0,0:7,7:43,43:0,0 chr2 46765 . A C . QSS_ref NT=het;QSS=11;QSS_NT=7;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:7:0:0:13,13:0,0:1,1:0,0 45:12:0:0:24,24:9,9:0,0:0,0 chr2 46849 . G C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:3:0:0:0,0:0,0:22,22:3,3 44:6:0:0:0,0:4,4:34,34:0,0 chr2 46904 . T A . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:1,1:24,24 61:1:0:0:1,1:0,0:0,0:59,59 chr2 46913 . A C,T . QSS_ref NT=het;QSS=498;QSS_NT=71;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:13,13:13,13:0,0:0,0 60:0:0:0:34,34:0,0:0,0:26,26 chr2 47019 . C T . PASS NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:28,28:1,1:0,0 46:0:0:0:0,0:44,44:0,0:2,2 chr2 47047 . T A,G . QSS_ref NT=het;QSS=131;QSS_NT=41;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:4,4:0,0:0,0:25,25 41:0:0:0:0,0:0,0:9,9:32,32 chr2 47109 . G C . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:0,0:0,0:42,42:0,0 44:0:0:0:0,0:1,1:43,43:0,0 chr2 47175 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:3,3:0,0:25,27:0,0 64:0:0:0:0,0:0,0:64,64:0,0 chr2 47191 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:21,23:0,0:0,0 63:0:0:0:0,0:59,59:4,4:0,0 chr2 47208 . T A . QSS_ref NT=conflict;QSS=3070;QSS_NT=0;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 18:0:0:0:0,0:0,0:0,1:18,19 63:0:0:0:3,3:0,0:0,0:60,60 chr2 47228 . A G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:18,18:0,0:0,0:2,2 62:0:0:0:53,53:0,0:9,9:0,0 chr2 47292 . C A,T . QSS_ref NT=het;QSS=156;QSS_NT=54;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:17,17:0,0:5,5 46:0:0:0:17,17:29,29:0,0:0,0 chr2 47363 . C A,T . QSS_ref NT=het;QSS=3;QSS_NT=3;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:26,26:0,0:3,3 34:0:0:0:2,2:32,32:0,0:0,0 chr2 47428 . C A,T . QSS_ref NT=het;QSS=59;QSS_NT=7;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:5,5:36,36:0,0:0,0 56:0:0:0:0,0:42,42:0,0:14,14 chr2 47490 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:36,36:0,0:0,0 59:0:0:0:0,0:58,58:0,0:1,1 chr2 47500 . T C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:10,10:22,22 57:0:0:0:0,0:4,4:0,0:53,53 chr2 47518 . T C . PASS NT=ref;QSS=28;QSS_NT=28;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:0,0:23,23 57:0:0:0:0,0:13,13:0,0:44,44 chr2 47611 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:0,0:31,31:0,0:11,11 44:0:0:0:7,7:37,37:0,0:0,0 chr2 47707 . A C,G . QSS_ref NT=het;QSS=164;QSS_NT=51;SGT=AC->AG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:21,22:5,5:0,0:0,0 47:0:0:0:40,40:0,0:7,7:0,0 chr2 47825 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:26,29:2,2:0,0:0,0 48:0:0:0:45,45:0,0:0,0:3,3 chr2 47946 . T A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:0,0:37,37 47:0:0:0:3,3:0,0:0,0:44,44 chr2 47957 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:29,29:0,0:3,3:0,0 48:0:0:0:48,48:0,0:0,0:0,0 chr2 47984 . C A,T . QSS_ref NT=het;QSS=822;QSS_NT=70;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:15,15:0,0:18,18 56:0:0:0:21,21:35,35:0,0:0,0 chr2 48100 . A C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:21,23:0,0:0,0:5,5 44:0:0:0:37,37:7,7:0,0:0,0 chr2 48172 . G C,T . QSS_ref NT=het;QSS=134;QSS_NT=48;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:22,23:4,4 54:0:0:0:0,0:11,11:43,43:0,0 chr2 48278 . G A . QSS_ref NT=conflict;QSS=13;QSS_NT=0;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 12:0:0:0:0,0:0,3:12,16:0,0 56:0:0:0:12,12:0,0:44,44:0,0 chr2 48347 . C A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:1,1:28,28:0,0:0,0 57:0:0:0:1,1:56,56:0,0:0,0 chr2 48430 . T A,C . QSS_ref NT=het;QSS=108;QSS_NT=49;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:4,4:0,0:21,21 41:0:0:0:8,8:0,0:0,0:33,33 chr2 48521 . A T . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:2:0:0:32,32:0,0:0,0:0,0 58:2:0:0:50,50:0,0:0,0:6,6 chr2 48564 . T C,G . QSS_ref NT=het;QSS=67;QSS_NT=33;SGT=CT->GT;SOMATIC;TQSS=2;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:4:0:0:0,0:3,3:0,0:23,23 62:11:0:0:0,0:0,0:6,6:45,49 chr2 48593 . G A,T . QSS_ref;BCNoise NT=het;QSS=42;QSS_NT=42;SGT=AG->GT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:12:0:0:2,2:0,0:11,13:0,0 62:31:0:0:0,0:0,0:27,27:4,4 chr2 48642 . A C . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:5:0:0:17,19:0,0:0,0:0,0 65:14:0:0:48,48:3,3:0,0:0,0 chr2 48685 . C A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:1:0:0:3,3:19,19:0,0:0,0 61:4:0:0:0,0:53,53:4,4:0,0 chr2 48743 . C A,T . QSS_ref NT=het;QSS=17;QSS_NT=17;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:22,22:0,0:3,3 53:0:0:0:8,8:45,45:0,0:0,0 chr2 48822 . C A,G . QSS_ref NT=het;QSS=7;QSS_NT=7;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:2,2:21,21:0,0:0,0 54:0:0:0:0,0:50,50:4,4:0,0 chr2 48862 . G C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:1,1:23,23:0,0 58:0:0:0:0,0:3,3:55,55:0,0 chr2 48969 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:11,11:15,15 57:0:0:0:16,16:0,0:0,0:41,41 chr2 49017 . G C,T . QSS_ref NT=het;QSS=144;QSS_NT=49;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:7,7:24,24:0,0 50:0:0:0:0,0:0,0:45,45:5,5 chr2 49089 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:31,31:0,0:1,1:0,0 62:0:0:0:59,59:0,0:0,0:3,3 chr2 49113 . C G . PASS NT=ref;QSS=18;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:1,1:24,24:0,0:0,0 55:0:0:0:0,0:45,45:10,10:0,0 chr2 49126 . C G . QSS_ref NT=het;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:2,2:23,23:0,0:0,0 50:0:0:0:0,0:46,46:4,4:0,0 chr2 49143 . T G . QSS_ref NT=ref;QSS=13;QSS_NT=12;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:1,1:0,0:0,0:23,23 47:0:0:0:0,0:0,0:4,4:43,43 chr2 49177 . T C . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:2,2:0,0:27,27 54:0:0:0:0,0:0,0:2,2:52,52 chr2 49203 . G T . PASS NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:33,33:0,0 52:0:0:0:0,0:0,0:50,50:2,2 chr2 49299 . T A,C . QSS_ref NT=het;QSS=149;QSS_NT=49;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:7,7:0,0:24,24 54:0:0:0:9,9:0,0:0,0:45,45 chr2 49521 . T A . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:2,2:0,0:28,28 90:0:0:0:8,8:0,0:0,0:82,82 chr2 49586 . A C . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:19,19:1,1:0,0:0,0 68:0:0:0:67,67:0,0:1,1:0,0 chr2 49626 . T C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:3,3:21,21 58:0:0:0:0,0:3,3:0,0:55,55 chr2 49933 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:26,26:2,2:0,0:0,0 84:0:0:0:84,106:0,0:0,0:0,0 chr2 50159 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:31,31:2,2:0,0:0,0 117:0:0:0:117,118:0,0:0,0:0,0 chr2 50173 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:31,31:0,0:0,0:4,4 117:0:0:0:117,118:0,0:0,0:0,0 chr2 50281 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:6,6:20,24:0,0 99:0:0:0:0,0:0,0:99,99:0,0 chr2 50362 . A C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:23,23:1,1:0,0:0,0 95:0:0:0:95,95:0,0:0,0:0,0 chr2 50378 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:19,19:0,0:3,3:0,0 99:0:0:0:99,99:0,0:0,0:0,0 chr2 50445 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:21,21:0,0:1,1 96:0:0:0:0,0:96,96:0,0:0,0 chr2 50504 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:25,25:0,0:3,3 103:0:0:0:0,0:103,103:0,0:0,0 chr2 50543 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:29,29:0,0:5,5:0,0 101:0:0:0:101,103:0,0:0,0:0,0 chr2 50653 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:30,30:7,7:0,0 108:0:0:0:0,0:108,108:0,0:0,0 chr2 50703 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:0,0:1,1:35,35 119:0:0:0:0,0:0,0:0,0:119,119 chr2 50852 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:0,0:0,0:2,2:18,20 102:0:0:0:0,0:0,0:0,0:102,104 chr2 50919 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:23,23:0,0:2,2 108:0:0:0:0,0:108,108:0,0:0,0 chr2 51025 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:30,30:0,0:5,5:0,0 103:0:0:0:103,103:0,0:0,0:0,0 chr2 51215 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:24,24:0,0:8,8 100:0:0:0:0,0:100,100:0,0:0,0 chr2 51272 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:2,2:0,0:0,0:23,26 110:0:0:0:0,0:0,0:0,0:110,110 chr2 51311 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:0,0:0,0:3,3:17,20 102:0:0:0:0,0:0,0:0,0:102,102 chr2 51730 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:4,4:0,0:0,0:19,19 88:0:0:0:0,0:0,0:0,0:88,90 chr2 51860 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:2,2:30,30 72:0:0:0:0,0:0,0:0,0:72,85 chr2 51940 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:5,5:31,31:0,0:0,0 74:0:0:0:0,0:74,108:0,0:0,0 chr2 52024 . C T . PASS NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:30,30:0,0:0,0 52:0:2:0:0,0:51,51:0,0:1,2 chr2 52480 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:25,25:2,2:0,0:0,0 51:0:0:0:51,53:0,0:0,0:0,0 chr2 52607 . C G . BCNoise;QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:15:0:0:0,0:12,18:6,6:0,0 41:20:0:0:0,1:21,35:0,0:0,0 chr2 52756 . C T . QSS_ref NT=het;QSS=3;QSS_NT=3;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:29,29:2,2:0,0 53:0:0:0:0,0:50,50:0,0:3,3 chr2 52810 . C G,T . QSS_ref NT=het;QSS=184;QSS_NT=41;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:27,27:6,6:0,0 58:0:0:0:0,0:49,49:0,0:9,9 chr2 52895 . T A,G . QSS_ref NT=het;QSS=65;QSS_NT=41;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:4,4:0,0:0,0:28,28 53:0:0:0:0,0:0,0:8,8:45,45 chr2 52972 . A G,T . QSS_ref NT=het;QSS=28;QSS_NT=28;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:28,28:0,0:3,3:0,0 41:0:0:0:36,36:0,0:0,0:5,5 chr2 52988 . C G,T . QSS_ref NT=het;QSS=178;QSS_NT=53;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:20,20:0,0:6,6 37:0:0:0:0,0:30,30:7,7:0,0 chr2 53079 . A T . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:37,37:0,0:0,0:0,0 57:0:0:0:54,54:0,0:0,0:3,3 chr2 53159 . A C . QSS_ref NT=het;QSS=14;QSS_NT=12;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:8:0:0:23,25:0,0:2,2:0,0 58:11:0:0:42,45:5,5:0,0:0,0 chr2 53230 . C A,T . BCNoise;QSS_ref NT=het;QSS=37;QSS_NT=36;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:21:0:0:2,2:15,15:0,0:0,0 45:25:0:0:0,0:18,18:0,0:2,3 chr2 53311 . T A,G . QSS_ref NT=het;QSS=99;QSS_NT=39;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:6:0:0:0,0:0,0:4,4:26,26 40:4:0:0:5,5:0,0:0,0:31,31 chr2 53370 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:31,31:3,3:0,0 48:0:0:0:0,0:46,46:2,2:0,0 chr2 53482 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:1:0:0:1,1:0,0:0,0:29,29 51:1:0:0:0,0:2,2:0,0:48,48 chr2 53603 . A G,T . QSS_ref NT=het;QSS=210;QSS_NT=71;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:9:0:0:14,17:0,0:0,0:14,14 56:18:0:0:33,36:0,0:5,7:0,0 chr2 53662 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:37,37:0,0:0,0:0,0 55:3:0:0:51,51:0,0:1,1:0,0 chr2 53683 . T G . PASS NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:0,0:0,0:38,38 54:0:0:0:0,0:0,0:3,3:51,51 chr2 53743 . C G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:0,0:31,31:10,10:0,0 57:0:0:0:0,0:46,46:0,0:11,11 chr2 53795 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:35,35:0,0:3,3 55:0:0:0:4,4:51,51:0,0:0,0 chr2 53816 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:13,13:24,24 52:0:0:0:0,0:0,0:6,6:46,46 chr2 53896 . C A,G . QSS_ref NT=het;QSS=166;QSS_NT=37;SGT=AC->CG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:6,6:30,31:0,0:0,0 58:0:0:0:0,0:49,49:9,9:0,0 chr2 53982 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:21,24:1,1:0,0:0,0 51:0:0:0:50,50:1,1:0,0:0,0 chr2 54016 . C A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:23,26:3,3:0,0 50:0:0:0:4,4:46,46:0,0:0,0 chr2 54065 . T A,G . QSS_ref NT=het;QSS=81;QSS_NT=20;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:4,4:31,31 44:0:0:0:6,6:0,0:0,0:38,38 chr2 54196 . A G,T . QSS_ref NT=het;QSS=545;QSS_NT=71;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:18,18:0,0:15,15:0,0 41:0:0:0:22,22:0,0:0,0:19,19 chr2 54354 . A T . PASS NT=ref;QSS=22;QSS_NT=22;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:41,41:0,0:0,0:0,0 37:0:0:0:35,35:0,0:0,0:2,2 chr2 54448 . A C,G . QSS_ref NT=het;QSS=64;QSS_NT=49;SGT=AG->AC;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 14:0:0:0:9,20:0,0:5,5:0,0 39:0:0:0:36,36:3,3:0,0:0,0 chr2 54505 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 12:0:0:0:0,1:12,16:0,0:0,0 51:0:0:0:0,0:48,48:0,0:3,3 chr2 54638 . C G,T . QSS_ref NT=het;QSS=40;QSS_NT=29;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:25,25:3,3:0,0 47:0:0:0:0,0:44,44:0,0:3,3 chr2 54660 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:24,24:0,0:0,0 46:0:0:0:0,0:45,45:0,0:1,1 chr2 54670 . G T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:24,24:0,0 43:0:0:0:0,0:0,0:41,41:2,2 chr2 54687 . T A . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:0,0:25,25 46:0:0:0:1,1:0,0:0,0:45,45 chr2 54699 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:1,1:0,0:0,0:26,26 46:0:0:0:0,0:4,4:0,0:42,42 chr2 54731 . C G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:24,24:0,0:5,5 44:0:0:0:0,0:41,41:3,3:0,0 chr2 54787 . T A . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:0,0:32,32 63:0:0:0:3,3:0,0:0,0:60,60 chr2 54821 . A G . PASS NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:31,31:0,0:0,0:0,0 63:0:0:0:57,57:0,0:6,6:0,0 chr2 54843 . G A,T . QSS_ref NT=het;QSS=98;QSS_NT=14;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:4,4:0,0:34,34:0,0 50:0:0:0:0,0:0,0:40,40:10,10 chr2 54947 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 18:1:0:0:0,0:0,0:2,2:15,21 56:5:0:0:0,0:0,0:1,1:50,50 chr2 54958 . C G . QSS_ref NT=conflict;QSS=3070;QSS_NT=0;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 13:2:0:0:0,0:11,14:0,0:0,3 56:8:0:0:0,0:46,46:2,2:0,0 chr2 55102 . C G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:31,31:2,2:0,0 66:0:0:0:0,0:55,55:0,0:11,11 chr2 55150 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:5,5:0,0:20,20 53:0:0:0:0,0:2,2:0,0:51,51 chr2 55162 . G T . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:0,0:22,22:0,0 50:0:0:0:0,0:0,0:45,45:5,5 chr2 55197 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:26,26:0,0:0,0 50:0:0:0:0,0:49,49:1,1:0,0 chr2 55210 . T G . QSS_ref NT=het;QSS=18;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:2,2:0,0:0,0:26,26 48:0:0:0:0,0:0,0:4,4:44,44 chr2 55254 . C A,T . QSS_ref NT=het;QSS=143;QSS_NT=41;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:5,5:24,24:0,0:0,0 60:0:0:0:0,0:55,55:0,0:5,5 chr2 55313 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:23,23:3,3:0,0:0,0 64:0:0:0:57,57:0,0:7,7:0,0 chr2 55431 . T C . QSS_ref NT=ref;QSS=12;QSS_NT=12;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:0,0:0,0:21,21 57:0:0:0:0,0:2,2:0,0:55,55 chr2 55468 . A C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:24,24:0,0:0,0:2,2 54:0:0:0:42,42:12,12:0,0:0,0 chr2 55586 . C A . QSS_ref NT=ref;QSS=13;QSS_NT=13;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:5:0:0:0,0:22,22:0,0:0,0 71:9:0:0:4,4:58,58:0,0:0,0 chr2 55599 . G C,T . QSS_ref NT=het;QSS=131;QSS_NT=47;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:8:0:0:0,0:4,4:19,19:0,0 64:13:0:0:0,0:0,0:44,44:7,7 chr2 55742 . G A,C . QSS_ref NT=het;QSS=36;QSS_NT=33;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:3:0:0:0,0:3,3:25,25:0,0 53:9:0:0:6,6:0,0:38,38:0,0 chr2 55802 . G C,T . BCNoise;QSS_ref NT=het;QSS=117;QSS_NT=49;SGT=GT->CG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:9:0:0:0,0:0,0:16,21:4,4 56:28:0:0:0,0:5,5:23,29:0,0 chr2 55883 . A T . BCNoise;QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:8:0:0:15,17:0,0:0,0:0,0 64:39:0:0:24,40:0,0:0,0:1,1 chr2 55966 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:1:0:0:0,0:0,0:31,31:0,0 59:2:0:0:0,0:0,0:56,56:1,1 chr2 55971 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:31,31:0,0:1,1:0,0 60:0:0:0:60,60:0,0:0,0:0,0 chr2 55975 . A G,T . QSS_ref NT=het;QSS=231;QSS_NT=57;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:26,26:0,0:7,7:0,0 59:0:0:0:51,51:0,0:0,0:8,8 chr2 56034 . G C,T . QSS_ref NT=het;QSS=167;QSS_NT=43;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:1:0:0:0,0:0,0:26,26:5,5 56:2:0:0:0,0:7,7:47,47:0,0 chr2 56116 . A C . BCNoise;QSS_ref NT=ref;QSS=6;QSS_NT=6;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:9:0:0:24,29:0,0:0,0:1,1 54:30:0:0:24,30:0,0:0,0:0,4 chr2 56178 . C T . PASS NT=ref;QSS=15;QSS_NT=15;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:28,28:1,1:0,0 52:4:0:0:0,0:45,45:0,0:3,3 chr2 56192 . T C,G . QSS_ref NT=het;QSS=36;QSS_NT=30;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:3,3:27,27 51:3:0:0:0,0:3,3:0,0:45,45 chr2 56252 . G C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:1,1:0,0:37,37:0,0 53:0:0:0:0,0:1,1:52,52:0,0 chr2 56271 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:35,35:0,0:2,2 61:0:0:0:0,0:57,57:0,0:4,4 chr2 56313 . T C,G . QSS_ref NT=het;QSS=247;QSS_NT=31;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:0,0:0,0:7,7:33,33 60:0:0:0:0,0:11,11:0,0:49,49 chr2 56362 . A T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:31,31:0,0:0,0:0,0 55:0:0:0:54,54:0,0:0,0:1,1 chr2 56371 . C G,T . QSS_ref NT=het;QSS=59;QSS_NT=25;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:30,30:0,0:3,3 54:0:0:0:0,0:47,47:7,7:0,0 chr2 56398 . C A,T . QSS_ref NT=het;QSS=179;QSS_NT=38;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:28,28:0,0:6,6 57:0:0:0:7,7:50,50:0,0:0,0 chr2 56464 . G A . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:0,0:0,0:39,39:0,0 45:0:0:0:9,9:0,0:36,36:0,0 chr2 56528 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:36,36:6,6:0,0:0,0 51:0:0:0:50,50:0,0:0,0:1,1 chr2 56557 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:39,39:0,0:0,0:0,0 53:0:0:0:51,51:0,0:2,2:0,0 chr2 56573 . A G,T . QSS_ref NT=het;QSS=37;QSS_NT=14;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:31,31:0,0:0,0:3,3 56:0:0:0:52,52:0,0:4,4:0,0 chr2 56616 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:7:0:0:0,0:0,0:19,19:5,5 56:5:0:0:0,0:0,0:48,48:3,3 chr2 56661 . A C . QSS_ref;BCNoise NT=ref;QSS=13;QSS_NT=13;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:16:0:0:18,25:0,0:0,0:0,0 53:24:0:0:26,37:3,3:0,0:0,0 chr2 56735 . G C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:2:0:0:0,0:3,3:27,27:0,0 53:9:0:0:0,0:0,0:40,40:4,4 chr2 56786 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:1,1:0,0:28,28:0,0 53:0:0:0:0,0:0,0:53,53:0,0 chr2 56797 . A T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:29,29:0,0:0,0:0,0 56:0:0:0:53,53:0,0:0,0:3,3 chr2 56836 . G C,T . QSS_ref NT=het;QSS=353;QSS_NT=54;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:10,10:26,26:0,0 66:0:0:0:0,0:0,0:56,56:10,10 chr2 56925 . C A,G . QSS_ref NT=het;QSS=185;QSS_NT=58;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:8:0:0:6,6:17,17:0,0:0,0 44:12:0:0:0,0:27,28:5,5:0,0 chr2 57002 . A C,G . QSS_ref NT=het;QSS=338;QSS_NT=56;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:3:0:0:26,26:9,9:0,0:0,0 57:4:0:0:43,43:0,0:10,10:0,0 chr2 57068 . T A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:0,0:0,0:0,0:40,40 63:0:0:0:1,1:0,0:0,0:62,62 chr2 57075 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:23,23:12,12:0,0:0,0 64:0:0:0:39,39:25,25:0,0:0,0 chr2 57176 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:29,29:0,0 67:0:0:0:0,0:1,1:66,66:0,0 chr2 57184 . T G . QSS_ref NT=het;QSS=18;QSS_NT=6;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:2,2:0,0:0,0:31,31 62:0:0:0:0,0:0,0:4,4:58,58 chr2 57197 . G A,C . QSS_ref NT=het;QSS=16;QSS_NT=15;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:2,2:30,30:0,0 62:0:0:0:3,3:0,0:59,59:0,0 chr2 57272 . C A,T . QSS_ref NT=het;QSS=90;QSS_NT=49;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:25,25:0,0:6,6 62:0:0:0:3,3:59,59:0,0:0,0 chr2 57373 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:1,1:29,29:0,0 48:0:0:0:1,1:0,0:47,47:0,0 chr2 57504 . C G . PASS NT=ref;QSS=21;QSS_NT=21;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:32,32:0,0:0,0 57:0:0:0:0,0:50,50:7,7:0,0 chr2 57523 . C G,T . QSS_ref NT=het;QSS=339;QSS_NT=69;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:23,23:0,0:11,11 62:0:0:0:0,0:39,39:23,23:0,0 chr2 57616 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:3,3:23,23 51:0:0:0:10,10:0,0:0,0:41,41 chr2 57769 . A C . PASS NT=ref;QSS=31;QSS_NT=31;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:37,37:0,0:0,0:0,0 47:0:0:0:38,38:9,9:0,0:0,0 chr2 57865 . G A,C . QSS_ref NT=het;QSS=86;QSS_NT=41;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:2:0:0:0,0:3,3:23,23:0,0 63:7:0:0:15,15:0,0:41,41:0,0 chr2 57903 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:4:0:0:24,24:0,0:1,1:0,0 53:12:0:0:38,38:0,0:0,0:3,3 chr2 57933 . T A,G . QSS_ref NT=het;QSS=7;QSS_NT=7;SGT=GT->AT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:7:0:0:0,0:0,1:2,2:25,25 53:19:0:0:7,8:0,0:0,0:27,31 chr2 58072 . T C,G . QSS_ref NT=het;QSS=46;QSS_NT=24;SGT=CT->GT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:8:0:0:0,0:3,3:0,0:26,27 53:19:0:0:0,0:0,0:3,3:31,33 chr2 58115 . T A,C . QSS_ref NT=het;QSS=72;QSS_NT=51;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:11:0:0:0,0:4,5:0,0:17,18 57:9:0:0:3,4:0,0:0,0:45,46 chr2 58154 . A C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:4:0:0:20,20:1,1:0,0:0,0 56:2:0:0:51,51:3,3:0,0:0,0 chr2 58200 . T C . QSS_ref NT=het;QSS=2;QSS_NT=2;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:2,2:0,0:0,0:28,28 51:0:0:0:0,0:8,8:0,0:43,43 chr2 58260 . A G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:31,31:0,0:0,0:4,4 48:0:0:0:43,43:0,0:5,5:0,0 chr2 58302 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:27,27:0,0:5,5 49:0:0:0:0,0:49,49:0,0:0,0 chr2 58364 . C A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:31,31:3,3:0,0 51:0:0:0:6,6:45,45:0,0:0,0 chr2 58416 . C A . PASS NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:33,33:0,0:1,1 53:0:0:0:2,2:51,51:0,0:0,0 chr2 58427 . A C,T . QSS_ref NT=het;QSS=38;QSS_NT=16;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:30,30:0,0:0,0:3,3 52:0:0:0:46,46:6,6:0,0:0,0 chr2 58498 . G T . PASS NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:5:0:0:0,0:0,0:27,27:0,0 41:6:0:0:0,0:0,0:33,33:2,2 chr2 58524 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:7:0:0:0,0:1,1:22,23:0,0 41:9:0:0:0,0:0,0:29,29:3,3 chr2 58554 . A G . QSS_ref;BCNoise NT=het;QSS=10;QSS_NT=10;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:13:0:0:18,23:2,2:0,0:0,0 39:23:0:0:13,18:0,0:3,6:0,0 chr2 58696 . G A,T . QSS_ref NT=het;QSS=73;QSS_NT=51;SGT=GT->AG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:19,22:5,5 43:0:0:0:3,3:0,0:40,40:0,0 chr2 58817 . T G . PASS NT=ref;QSS=15;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:4:0:0:0,0:0,0:0,0:29,29 48:4:0:0:0,0:0,0:3,3:41,41 chr2 58883 . A G,T . QSS_ref;BCNoise NT=het;QSS=16;QSS_NT=16;SGT=AG->AT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:9:0:0:19,24:0,0:2,2:0,0 48:24:0:0:22,25:0,0:0,1:2,3 chr2 58901 . A C,T . QSS_ref NT=het;QSS=155;QSS_NT=62;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:3:0:0:18,18:9,10:0,0:0,0 45:17:0:0:22,25:0,0:0,0:6,6 chr2 59004 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:17,17:9,9 44:0:0:0:0,0:0,0:44,44:0,0 chr2 59005 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:0,0:26,26 44:0:0:0:0,0:9,9:0,0:35,35 chr2 59082 . A G,T . QSS_ref NT=het;QSS=159;QSS_NT=39;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:25,25:0,0:5,5:0,0 51:0:0:0:44,44:0,0:0,0:7,7 chr2 59169 . C T . QSS_ref NT=ref;QSS=11;QSS_NT=11;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:3:0:0:0,0:19,20:0,0:0,0 57:10:0:0:0,0:46,46:0,0:1,1 chr2 59210 . G A . BCNoise;QSS_ref NT=conflict;QSS=2;QSS_NT=0;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 14:5:0:0:0,0:0,0:9,9:0,1 48:21:0:0:1,2:0,0:26,26:0,0 chr2 59225 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 17:1:0:0:16,16:0,0:0,0:0,0 50:9:0:0:39,40:0,0:2,2:0,0 chr2 59257 . C A,G . QSS_ref NT=het;QSS=108;QSS_NT=63;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:7,7:17,17:0,0:0,0 43:3:0:0:0,0:37,37:3,3:0,0 chr2 59341 . A T . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:3:0:0:25,25:0,0:0,0:0,0 52:5:0:0:46,46:0,0:0,0:1,1 chr2 59406 . A T . QSS_ref;BCNoise NT=ref;QSS=14;QSS_NT=14;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:16:0:0:15,22:0,0:0,0:0,0 62:29:0:0:28,41:0,0:0,0:5,6 chr2 59474 . C G,T . QSS_ref NT=het;QSS=254;QSS_NT=67;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:3:0:0:0,0:12,12:7,7:0,0 46:9:0:0:0,0:23,23:0,0:14,14 chr2 59592 . C A . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:38,38:0,0:0,0 37:0:0:0:7,7:30,30:0,0:0,0 chr2 59652 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:0,0:0,0:36,36 48:0:0:0:1,1:0,0:0,0:47,47 chr2 59665 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:25,25:0,0 52:0:0:0:0,0:1,1:51,51:0,0 chr2 59711 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:4,4:0,0:17,17 58:0:0:0:0,0:12,12:0,0:46,46 chr2 59811 . A C . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:6:0:0:24,24:0,0:0,0:0,0 32:4:0:0:24,24:4,4:0,0:0,0 chr2 59851 . A C . PASS NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:11:0:0:25,25:0,0:0,0:0,0 32:10:0:0:21,22:1,1:0,0:0,0 chr2 59911 . A C,G . QSS_ref NT=het;QSS=148;QSS_NT=38;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:5:0:0:30,30:7,7:0,0:0,0 39:2:0:0:32,32:0,0:5,5:0,0 chr2 59954 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:1:0:0:29,29:0,0:3,3:0,0 47:0:0:0:46,46:1,1:0,0:0,0 chr2 59982 . C A,T . QSS_ref NT=het;QSS=272;QSS_NT=55;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:23,23:0,0:9,9 57:0:0:0:18,18:39,39:0,0:0,0 chr2 60081 . T A,C . QSS_ref;BCNoise NT=het;QSS=142;QSS_NT=54;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:14:0:0:0,0:6,6:0,0:19,19 42:23:0:0:4,4:0,0:0,0:15,15 chr2 60234 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:7,7:22,22:0,0:0,0 52:0:0:0:0,0:46,46:0,0:6,6 chr2 60282 . T C,G . QSS_ref NT=het;QSS=67;QSS_NT=33;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:6,6:0,0:30,30 53:0:0:0:0,0:0,0:3,3:50,50 chr2 60320 . G A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:9,9:0,0:18,18:0,0 55:0:0:0:0,0:1,1:54,54:0,0 chr2 60347 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:30,30:0,0 57:0:0:0:0,0:8,8:49,49:0,0 chr2 60392 . T C . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:0,0:23,23 59:2:0:0:0,0:5,5:0,0:52,52 chr2 60408 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:1:0:0:1,1:0,0:24,24:0,0 57:2:0:0:1,1:0,0:54,54:0,0 chr2 60415 . C G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:3:0:0:0,0:21,21:0,0:5,5 59:2:0:0:0,0:52,52:5,5:0,0 chr2 60441 . T G . QSS_ref NT=het;QSS=3;QSS_NT=3;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:8:0:0:0,0:2,2:0,0:21,21 68:8:0:0:0,0:0,0:3,3:57,57 chr2 60529 . C A,T . QSS_ref NT=het;QSS=124;QSS_NT=41;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:4:0:0:0,0:25,25:0,0:4,4 75:11:0:0:8,8:56,57:0,0:0,0 chr2 60588 . T A . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:2:0:0:0,0:0,0:0,0:36,36 64:1:0:0:0,0:1,1:0,0:62,62 chr2 60613 . C G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:32,32:0,0:3,3 64:0:0:0:0,0:60,60:4,4:0,0 chr2 60991 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:29,29:1,1 49:2:0:0:0,0:0,0:47,47:0,0 chr2 61040 . A G . QSS_ref NT=ref;QSS=21;QSS_NT=9;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:4:0:0:19,20:1,1:0,0:0,0 48:9:0:0:31,31:0,0:8,8:0,0 chr2 61074 . C A . BCNoise;QSS_ref NT=ref;QSS=7;QSS_NT=7;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:13:0:0:0,0:25,25:0,0:0,0 49:25:0:0:1,1:23,23:0,0:0,0 chr2 61126 . T C . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 43:6:0:0:0,0:0,0:0,0:37,37 55:11:0:0:0,0:7,7:0,0:37,37 chr2 61138 . T G . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 43:6:0:0:0,0:0,0:0,0:37,37 59:11:0:0:0,0:0,0:1,1:47,47 chr2 61194 . C A,G . QSS_ref NT=het;QSS=201;QSS_NT=39;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:6,6:30,30:0,0:0,0 70:0:0:0:0,0:59,59:11,11:0,0 chr2 61338 . G T . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:28,28:0,0 51:0:0:0:0,0:0,0:47,47:4,4 chr2 61386 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:1,1:0,0:0,0:26,26 64:0:0:0:0,0:3,3:0,0:61,61 chr2 61419 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:32,32:2,2:0,0 56:0:0:0:0,0:56,56:0,0:0,0 chr2 61538 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:26,26:2,2 54:0:0:0:0,0:6,6:48,48:0,0 chr2 61561 . T G . QSS_ref NT=het;QSS=17;QSS_NT=15;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:2,2:0,0:0,0:25,25 54:0:0:0:0,0:0,0:5,5:49,49 chr2 61633 . G C . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:26,26:0,0 60:6:0:0:0,0:1,1:53,53:0,0 chr2 61647 . G C,T . QSS_ref NT=het;QSS=133;QSS_NT=49;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:1:0:0:0,0:0,0:18,18:4,4 62:9:0:0:0,0:9,9:44,44:0,0 chr2 61874 . G A . PASS NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:27,27:0,0 52:0:0:0:1,1:0,0:51,51:0,0 chr2 61883 . G A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:4,4:0,0:23,23:0,0 50:0:0:0:0,0:0,0:45,45:5,5 chr2 61927 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:30,30:0,0:0,0:0,0 51:0:0:0:47,47:0,0:4,4:0,0 chr2 61993 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:0,0:28,28 53:0:0:0:3,3:0,0:0,0:50,50 chr2 62027 . G A,T . QSS_ref NT=het;QSS=66;QSS_NT=30;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:3,3:0,0:28,28:0,0 49:0:0:0:0,0:0,0:42,42:7,7 chr2 62132 . C A . QSS_ref NT=ref;QSS=13;QSS_NT=13;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 19:0:0:0:0,0:19,19:0,0:0,0 57:0:0:0:5,5:52,52:0,0:0,0 chr2 62236 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:2,2:0,0:30,30:0,0 53:0:0:0:0,0:0,0:41,41:12,12 chr2 62436 . T A,C . BCNoise;QSS_ref NT=het;QSS=207;QSS_NT=66;SGT=AT->CT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:12:0:0:7,7:0,0:0,0:16,18 57:24:0:0:0,0:8,8:0,0:25,39 chr2 62535 . G A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:2:0:0:0,0:2,2:21,21:0,0 48:0:0:0:2,2:0,0:46,46:0,0 chr2 62568 . G . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=GG->GG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:28,28:0,0 45:0:0:0:2,2:0,0:43,43:0,0 chr2 62615 . C T . QSS_ref NT=ref;QSS=6;QSS_NT=6;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:35,35:0,0:0,0 38:0:0:0:0,0:35,35:0,0:3,3 chr2 62653 . T C,G . QSS_ref NT=het;QSS=6;QSS_NT=3;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:2,2:0,0:36,36 32:0:0:0:0,0:0,0:2,2:30,30 chr2 62687 . G A . QSS_ref NT=ref;QSS=6;QSS_NT=6;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:0,0:36,36:0,0 46:0:0:0:1,1:0,0:45,45:0,0 chr2 62716 . A G . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:29,29:1,1:0,0:0,0 51:0:0:0:45,45:0,0:6,6:0,0 chr2 62768 . G C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:1,1:0,0:26,26:0,0 54:0:0:0:0,0:6,6:48,48:0,0 chr2 62794 . G T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:29,29:1,1 47:0:0:0:0,0:0,0:47,47:0,0 chr2 62808 . A C,T . QSS_ref NT=het;QSS=173;QSS_NT=48;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:29,29:0,0:0,0:8,8 47:0:0:0:39,39:8,8:0,0:0,0 chr2 62915 . T A . PASS NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:1,1:0,0:31,31 43:0:0:0:2,2:0,0:0,0:41,41 chr2 62927 . A G,T . QSS_ref NT=het;QSS=41;QSS_NT=30;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:31,31:0,0:0,0:3,3 41:0:0:0:38,38:0,0:3,3:0,0 chr2 63051 . C A . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:27,27:0,0:0,0 52:0:0:0:6,6:46,46:0,0:0,0 chr2 63138 . T C,G . QSS_ref NT=het;QSS=35;QSS_NT=21;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:3,3:0,0:28,28 50:0:0:0:0,0:0,0:3,3:47,47 chr2 63193 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:32,32:0,0:0,0 47:0:0:0:2,2:45,45:0,0:0,0 chr2 63259 . C A,G . QSS_ref NT=het;QSS=79;QSS_NT=53;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:19,19:4,4:0,0 40:0:0:0:3,3:37,37:0,0:0,0 chr2 63387 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:36,36:0,0:0,0 54:0:0:0:0,0:52,52:2,2:0,0 chr2 63401 . A G,T . QSS_ref NT=het;QSS=324;QSS_NT=50;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:28,28:0,0:8,8:0,0 55:0:0:0:43,43:0,0:0,0:12,12 chr2 63459 . C G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:1,1:28,28:0,0:0,0 50:0:0:0:0,0:45,45:5,5:0,0 chr2 63526 . A C,T . QSS_ref NT=het;QSS=19;QSS_NT=18;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:25,25:2,2:0,0:0,0 44:0:0:0:41,41:0,0:0,0:3,3 chr2 63534 . G A,C . QSS_ref NT=het;QSS=4;QSS_NT=4;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:2,2:0,0:27,27:0,0 45:0:0:0:0,0:2,2:43,43:0,0 chr2 63586 . T A,C . QSS_ref NT=het;QSS=66;QSS_NT=33;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:3,3:0,0:0,0:23,23 46:0:0:0:0,0:7,7:0,0:39,39 chr2 63642 . G C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:1,1:20,20:0,0 53:0:0:0:0,0:4,4:49,49:0,0 chr2 63745 . C G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:1,1:26,26:0,0:0,0 50:0:0:0:0,0:47,47:3,3:0,0 chr2 63795 . G C . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:25,25:1,1 50:0:0:0:0,0:1,1:49,49:0,0 chr2 63808 . C A . QSS_ref NT=het;QSS=2;QSS_NT=2;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:3,3:27,27:0,0:0,0 52:0:0:0:0,0:50,50:2,2:0,0 chr2 63835 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:30,30:1,1 51:0:0:0:0,0:0,0:48,48:3,3 chr2 63966 . C G,T . QSS_ref NT=het;QSS=104;QSS_NT=45;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:20,20:4,4:0,0 59:0:0:0:0,0:53,53:0,0:6,6 chr2 64008 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:3,3:0,0:0,0:21,21 60:0:0:0:0,0:0,0:11,11:49,49 chr2 64039 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:26,26:1,1 47:0:0:0:0,0:0,0:47,47:0,0 chr2 64050 . G A . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:30,30:0,0 51:0:0:0:4,4:0,0:47,47:0,0 chr2 64075 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:33,33:0,0 51:0:0:0:0,0:2,2:49,49:0,0 chr2 64081 . C A,G . QSS_ref NT=het;QSS=52;QSS_NT=21;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:3,3:28,28:0,0:0,0 51:0:0:0:0,0:46,46:5,5:0,0 chr2 64109 . C G . PASS NT=ref;QSS=18;QSS_NT=18;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:34,34:0,0:0,0 50:0:0:0:0,0:47,47:3,3:0,0 chr2 64154 . G A,T . QSS_ref NT=het;QSS=67;QSS_NT=19;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:29,29:3,3 42:0:0:0:7,7:0,0:35,35:0,0 chr2 64224 . C T . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:29,29:0,0:0,0 44:0:0:0:0,0:40,40:0,0:4,4 chr2 64242 . A T . QSS_ref NT=het;QSS=3;QSS_NT=3;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:26,26:2,2:0,0:0,0 51:0:0:0:47,47:0,0:0,0:4,4 chr2 64282 . T A,C . QSS_ref NT=het;QSS=183;QSS_NT=43;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:7,7:0,0:27,27 60:0:0:0:7,7:0,0:0,0:53,53 chr2 64330 . G C . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:4:0:0:0,0:0,0:26,26:0,0 57:2:0:0:0,0:4,4:51,51:0,0 chr2 64375 . C A,T . QSS_ref NT=het;QSS=98;QSS_NT=60;SGT=AC->CT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:8:0:0:3,3:12,13:0,0:0,0 55:6:0:0:0,0:45,48:0,0:4,4 chr2 64408 . C G . BCNoise;QSS_ref NT=ref;QSS=7;QSS_NT=6;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:10:0:0:0,1:17,19:0,0:0,0 45:18:0:0:0,0:26,27:1,1:0,0 chr2 64472 . A . . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=AA->AA;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:4:0:0:25,25:0,0:2,2:0,0 43:3:0:0:38,38:0,0:0,0:2,2 chr2 64488 . G C,T . QSS_ref NT=het;QSS=164;QSS_NT=39;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:1:0:0:0,0:5,5:25,25:0,0 41:0:0:0:0,0:0,0:34,34:7,7 chr2 64569 . C G . PASS NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:5:0:0:0,0:27,27:0,0:0,0 55:8:0:0:0,0:46,46:1,1:0,0 chr2 64583 . T C,G . QSS_ref NT=het;QSS=66;QSS_NT=30;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:8:0:0:0,0:3,3:0,0:28,28 57:11:0:0:0,0:0,0:9,9:37,37 chr2 64634 . A G . BCNoise;QSS_ref NT=ref;QSS=17;QSS_NT=13;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:15:0:0:22,26:0,0:0,0:1,1 51:26:0:0:23,29:0,1:2,4:0,0 chr2 64688 . T C . QSS_ref NT=het;QSS=5;QSS_NT=4;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:5:0:0:0,0:0,0:2,2:29,29 53:8:0:0:0,0:3,3:0,0:42,42 chr2 64702 . A G . QSS_ref NT=het;QSS=6;QSS_NT=3;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:3:0:0:31,31:2,2:0,0:0,0 48:4:0:0:40,40:0,0:4,4:0,0 chr2 64714 . C T . QSS_ref NT=het;QSS=3;QSS_NT=3;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:2:0:0:2,2:30,30:0,0:0,0 46:2:0:0:0,0:41,41:0,0:3,3 chr2 64730 . A T . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:26,26:0,0:0,0:2,2 43:0:0:0:38,38:5,5:0,0:0,0 chr2 64766 . A C . PASS NT=ref;QSS=32;QSS_NT=32;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:31,31:0,0:0,0:0,0 39:0:0:0:30,30:9,9:0,0:0,0 chr2 64807 . G A,T . QSS_ref NT=het;QSS=180;QSS_NT=47;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:6,6:0,0:23,23:0,0 43:0:0:0:0,0:0,0:21,21:22,22 chr2 64881 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:1,1:0,0:21,21:0,0 47:0:0:0:0,0:1,1:46,46:0,0 chr2 64899 . C G . PASS NT=ref;QSS=32;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:22,22:0,0:1,1 49:0:0:0:0,0:31,31:18,18:0,0 chr2 65161 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:7:0:0:0,0:19,19:5,5:0,0 41:5:0:0:0,0:36,36:0,0:0,0 chr2 65236 . A C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:12,12:0,0:0,0:18,18 51:0:0:0:47,47:4,4:0,0:0,0 chr2 65326 . T C . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:0,0:0,0:22,22 48:0:0:0:0,0:2,2:0,0:46,46 chr2 65337 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:3,3:0,0:0,0:23,23 42:0:0:0:3,3:0,0:0,0:39,39 chr2 65366 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:1,1:0,0:0,0:28,28 49:0:0:0:0,0:2,2:0,0:47,47 chr2 65370 . C A,T . QSS_ref NT=het;QSS=261;QSS_NT=49;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:24,24:0,0:7,7 48:0:0:0:8,8:40,40:0,0:0,0 chr2 65423 . A G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:33,33:0,0:1,1:0,0 49:0:0:0:49,49:0,0:0,0:0,0 chr2 65426 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:34,34:0,0 50:0:0:0:1,1:0,0:49,49:0,0 chr2 65435 . T A,C . QSS_ref NT=het;QSS=217;QSS_NT=39;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:6,6:0,0:0,0:27,27 55:0:0:0:0,0:19,19:0,0:36,36 chr2 65580 . A G,T . QSS_ref NT=het;QSS=299;QSS_NT=64;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:6:0:0:16,16:0,0:0,0:8,8 50:6:0:0:31,31:0,0:13,13:0,0 chr2 65663 . G C,T . QSS_ref NT=het;QSS=214;QSS_NT=66;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:4:0:0:0,0:0,0:11,11:6,6 51:11:0:0:0,0:15,15:25,25:0,0 chr2 65862 . T A,G . QSS_ref NT=het;QSS=5;QSS_NT=5;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:2,2:0,0:0,0:24,24 54:0:0:0:0,0:0,0:6,6:48,48 chr2 65889 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:3:0:0:0,0:6,6:0,0:19,19 61:4:0:0:0,0:6,6:0,0:51,51 chr2 66001 . C A,G . QSS_ref NT=het;QSS=88;QSS_NT=44;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:9:0:0:0,0:18,18:3,4:0,0 54:11:0:0:14,14:29,31:0,0:0,0 chr2 66104 . T A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:0,0:24,24 53:0:0:0:1,1:0,0:0,0:52,52 chr2 66124 . C G,T . QSS_ref NT=het;QSS=111;QSS_NT=40;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:23,23:0,0:4,4 56:0:0:0:0,0:51,51:5,5:0,0 chr2 66284 . G C . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:28,28:0,0 54:0:0:0:0,0:3,3:51,51:0,0 chr2 66411 . T G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:5:0:0:0,0:0,0:0,0:20,20 52:10:0:0:0,0:0,0:2,2:40,40 chr2 66416 . C A,T . QSS_ref NT=het;QSS=57;QSS_NT=46;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:6:0:0:3,3:17,17:0,0:0,0 54:14:0:0:0,0:37,37:0,0:3,3 chr2 66502 . A C,T . QSS_ref NT=het;QSS=136;QSS_NT=56;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:4:0:0:19,19:0,0:0,0:5,5 54:6:0:0:41,41:7,7:0,0:0,0 chr2 66588 . G T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:0,0:22,22:0,0 48:0:0:0:0,0:0,0:47,47:1,1 chr2 66626 . G C,T . QSS_ref NT=het;QSS=21;QSS_NT=20;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:2,2:30,30:0,0 41:0:0:0:0,0:0,0:37,37:4,4 chr2 66654 . G C . PASS NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:0,0:38,38:0,0 45:0:0:0:0,0:3,3:42,42:0,0 chr2 66670 . T C,G . QSS_ref NT=het;QSS=400;QSS_NT=51;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 46:0:0:0:0,0:12,12:0,0:34,34 44:0:0:0:0,0:0,0:11,11:33,33 chr2 66733 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:4,4:31,31:0,0:0,0 53:0:0:0:7,7:46,46:0,0:0,0 chr2 66757 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:30,30:1,1:0,0 51:0:0:0:2,2:49,49:0,0:0,0 chr2 66815 . T C,G . QSS_ref NT=het;QSS=53;QSS_NT=38;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:4,4:23,23 53:0:0:0:0,0:3,3:0,0:50,50 chr2 66832 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:1,1:26,26:0,0 56:0:0:0:0,0:0,0:52,52:4,4 chr2 66861 . C A,T . QSS_ref NT=het;QSS=226;QSS_NT=51;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:21,21:0,0:6,6 58:0:0:0:15,15:43,43:0,0:0,0 chr2 66927 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:25,25:0,0:2,2:0,0 51:0:0:0:48,48:3,3:0,0:0,0 chr2 67004 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:27,27:0,0:0,0:1,1 46:0:0:0:40,40:0,0:6,6:0,0 chr2 67074 . A C . QSS_ref NT=het;QSS=23;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:24,24:0,0:2,2:0,0 56:0:0:0:45,45:11,11:0,0:0,0 chr2 67140 . A G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:26,26:0,0:8,8:0,0 53:0:0:0:49,49:0,0:0,0:4,4 chr2 67180 . C G . PASS NT=ref;QSS=25;QSS_NT=25;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:0,0:41,41:0,0:0,0 55:0:0:0:0,0:46,46:9,9:0,0 chr2 67253 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:30,30:0,0:0,0:0,0 45:0:0:0:44,44:0,0:1,1:0,0 chr2 67271 . C A,G . QSS_ref NT=het;QSS=7;QSS_NT=7;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:2,2:29,29:0,0:0,0 41:0:0:0:0,0:38,38:3,3:0,0 chr2 67292 . G A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:2,2:0,0:30,30:0,0 44:0:0:0:0,0:0,0:41,41:3,3 chr2 67316 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:27,27:0,0 50:0:0:0:2,2:0,0:48,48:0,0 chr2 67320 . G A,C . QSS_ref NT=het;QSS=50;QSS_NT=33;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:3,3:23,23:0,0 49:0:0:0:3,3:0,0:46,46:0,0 chr2 67351 . G A,C . QSS_ref NT=het;QSS=271;QSS_NT=63;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:7,7:20,20:0,0 48:0:0:0:12,12:0,0:36,36:0,0 chr2 67428 . T C,G . QSS_ref NT=het;QSS=34;QSS_NT=27;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:3,3:0,0:25,25 53:0:0:0:0,0:0,0:9,9:44,44 chr2 67527 . A C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:25,25:13,13:0,0:0,0 49:0:0:0:38,38:0,0:0,0:11,11 chr2 67604 . G C . PASS NT=ref;QSS=23;QSS_NT=23;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:28,28:0,0 42:0:0:0:0,0:6,6:36,36:0,0 chr2 67675 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:24,28:0,0:0,0 50:0:0:0:0,0:47,47:3,3:0,0 chr2 67688 . A C,T . QSS_ref NT=het;QSS=30;QSS_NT=30;SGT=AC->AT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 19:0:0:0:15,19:4,4:0,0:0,0 52:0:0:0:50,50:0,0:0,0:2,2 chr2 67814 . T C . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:1,1:0,0:0,0:28,28 55:0:0:0:0,0:4,4:0,0:51,51 chr2 67871 . C A . PASS NT=ref;QSS=18;QSS_NT=18;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:34,34:0,0:0,0 45:0:0:0:1,1:44,44:0,0:0,0 chr2 67942 . T A . PASS NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:0,0:28,28 42:0:0:0:1,1:0,0:0,0:41,41 chr2 67955 . G A . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:3,3:0,0:23,23:0,0 43:0:0:0:0,0:0,0:42,42:1,1 chr2 68004 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:26,26:1,1 64:0:0:0:0,0:0,0:63,63:1,1 chr2 68023 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:28,28:0,0:3,3:0,0 69:0:0:0:68,68:0,0:1,1:0,0 chr2 68049 . T C . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:0,0:33,33 69:0:0:0:0,0:11,11:0,0:58,58 chr2 68082 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:1:0:0:0,0:0,0:31,31:0,0 59:0:0:0:1,1:0,0:58,58:0,0 chr2 68143 . C G . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:3:0:0:0,0:24,24:0,0:0,0 52:16:0:0:0,0:35,35:1,1:0,0 chr2 68156 . A C,T . QSS_ref;BCNoise NT=het;QSS=18;QSS_NT=18;SGT=AT->AC;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:7:0:0:13,17:0,0:0,0:2,2 53:23:0:0:23,26:7,7:0,0:0,0 chr2 68267 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:2:0:0:0,0:1,1:0,0:25,25 59:16:0:0:0,0:0,0:2,2:41,41 chr2 68302 . C A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:1:0:0:4,4:29,29:0,0:0,0 60:1:0:0:0,0:54,54:5,5:0,0 chr2 68323 . G C . PASS NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:31,31:0,0 56:0:0:0:0,0:4,4:52,52:0,0 chr2 68344 . A C,T . QSS_ref NT=het;QSS=494;QSS_NT=65;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:24,24:12,12:0,0:0,0 61:0:0:0:38,38:0,0:0,0:23,23 chr2 68450 . C A,T . QSS_ref NT=het;QSS=90;QSS_NT=44;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:18,18:0,0:3,3 46:0:0:0:12,12:34,34:0,0:0,0 chr2 68620 . A C,G . QSS_ref NT=het;QSS=343;QSS_NT=48;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:28,28:0,0:9,9:0,0 50:0:0:0:40,40:10,10:0,0:0,0 chr2 68981 . A G . BCNoise;QSS_ref NT=conflict;QSS=10;QSS_NT=0;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:12:0:0:13,18:0,0:0,0:1,1 54:22:0:0:28,34:0,0:4,4:0,0 chr2 69008 . A C,G . QSS_ref NT=het;QSS=184;QSS_NT=57;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:8:0:0:17,17:6,6:0,0:0,0 57:9:0:0:25,25:0,0:23,23:0,0 chr2 69561 . C T . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:1:0:0:0,0:21,32:0,0:0,0 64:4:0:0:0,0:59,59:0,0:1,1 chr2 69567 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:1:0:0:0,0:16,27:5,5:0,0 63:1:0:0:0,0:59,59:3,3:0,0 chr2 69593 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 15:0:0:0:0,0:0,0:0,0:15,24 56:0:0:0:0,0:0,0:2,2:54,54 chr2 69613 . G A,C . QSS_ref NT=het;QSS=53;QSS_NT=37;SGT=AG->CG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 17:0:0:0:3,3:0,0:14,21:0,0 56:0:0:0:0,0:4,4:52,52:0,0 chr2 69658 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:12,18:0,0:11,11 54:0:0:0:6,6:48,48:0,0:0,0 chr2 69757 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 12:0:0:0:7,16:5,5:0,0:0,0 61:0:0:0:56,56:0,0:5,5:0,0 chr2 69791 . T G . QSS_ref NT=conflict;QSS=7;QSS_NT=0;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 10:0:0:0:0,0:0,4:0,0:10,15 59:0:0:0:0,0:0,0:5,5:54,54 chr2 69850 . G A,T . QSS_ref NT=het;QSS=85;QSS_NT=69;SGT=AG->GT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 17:0:0:0:9,9:0,0:8,12:0,0 50:0:0:0:0,0:0,0:48,48:2,2 chr2 69853 . C G . PASS NT=ref;QSS=22;QSS_NT=22;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 17:0:0:0:0,0:17,22:0,0:0,0 48:0:0:0:0,0:38,38:10,10:0,0 chr2 69921 . C A . QSS_ref NT=conflict;QSS=3070;QSS_NT=0;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 0:0:0:0:0,0:0,16:0,0:0,0 46:0:0:0:2,2:44,44:0,0:0,0 chr2 69929 . T A . QSS_ref NT=conflict;QSS=4;QSS_NT=0;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 0:0:0:0:0,0:0,2:0,0:0,14 48:0:0:0:5,5:0,0:0,0:43,43 chr2 69953 . G A . QSS_ref NT=conflict;QSS=3070;QSS_NT=0;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 0:0:0:0:0,3:0,0:0,15:0,0 50:0:0:0:4,4:0,0:46,46:0,0 chr2 69977 . A G . QSS_ref NT=conflict;QSS=3070;QSS_NT=0;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 0:0:0:0:0,16:0,1:0,0:0,0 51:0:0:0:50,50:0,0:1,1:0,0 chr2 70011 . A C . QSS_ref NT=ref;QSS=4;QSS_NT=1;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 0:0:0:0:0,15:0,0:0,0:0,0 59:0:0:0:56,56:3,3:0,0:0,0 chr2 70055 . C T . QSS_ref NT=ref;QSS=2;QSS_NT=0;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 0:0:0:0:0,0:0,11:0,0:0,0 51:0:0:0:0,0:50,50:0,0:1,1 chr2 70095 . C . . QSS_ref NT=ref;QSS=2;QSS_NT=0;SGT=CC->CC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 0:0:0:0:0,0:0,9:0,0:0,0 33:0:0:0:0,0:31,31:0,0:2,2 chr3 335 . T C . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 14:0:0:0:0,0:0,0:0,0:14,14 42:0:0:0:0,0:1,1:0,0:41,41 chr3 377 . G T . QSS_ref NT=ref;QSS=10;QSS_NT=10;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 14:0:0:0:0,0:0,0:14,14:0,0 48:0:0:0:0,0:0,0:45,45:3,3 chr3 407 . G C . QSS_ref NT=ref;QSS=10;QSS_NT=10;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 15:0:0:0:0,0:0,0:15,15:0,0 49:0:0:0:0,0:3,3:46,46:0,0 chr3 520 . A G . BCNoise;QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:5:0:0:21,22:0,0:0,0:0,0 43:19:0:0:22,23:0,0:2,2:0,0 chr3 563 . T A . QSS_ref;BCNoise NT=ref;QSS=6;QSS_NT=6;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:5:0:0:0,0:1,1:0,0:23,23 54:23:0:0:1,1:0,0:0,0:30,37 chr3 574 . C A,G . QSS_ref NT=het;QSS=224;QSS_NT=62;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:4:0:0:7,7:16,16:0,0:0,0 53:15:0:0:0,0:22,26:16,16:0,0 chr3 686 . A C . QSS_ref NT=het;QSS=1;QSS_NT=0;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:31,31:0,0:0,0:2,2 55:0:0:0:47,47:8,8:0,0:0,0 chr3 729 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:31,31:0,0:0,0:0,0 47:0:0:0:43,43:0,0:4,4:0,0 chr3 827 . A C,T . QSS_ref NT=het;QSS=19;QSS_NT=18;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:21,21:2,2:0,0:0,0 50:0:0:0:45,45:0,0:0,0:5,5 chr3 865 . T A . QSS_ref NT=het;QSS=20;QSS_NT=6;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:2,2:0,0:30,30 42:0:0:0:5,5:0,0:0,0:37,37 chr3 896 . A G,T . QSS_ref NT=het;QSS=65;QSS_NT=32;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:27,27:0,0:0,0:3,3 45:0:0:0:36,36:0,0:9,9:0,0 chr3 1093 . G A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:3,3:32,32:0,0 57:0:0:0:4,4:0,0:53,53:0,0 chr3 1110 . A C,T . QSS_ref NT=het;QSS=106;QSS_NT=30;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:30,30:0,0:0,0:4,4 53:0:0:0:47,47:6,6:0,0:0,0 chr3 1177 . A C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:37,37:0,0:0,0:0,0 51:0:0:0:49,49:2,2:0,0:0,0 chr3 1207 . G A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:11,11:0,0:23,23:0,0 48:0:0:0:0,0:0,0:44,44:4,4 chr3 1272 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:31,31:0,0 52:0:0:0:0,0:0,0:49,49:3,3 chr3 1280 . G C . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:1,1:0,0:28,28:0,0 43:0:0:0:0,0:2,2:41,41:0,0 chr3 1291 . T A,G . QSS_ref NT=het;QSS=49;QSS_NT=31;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:3,3:24,24 39:0:0:0:5,5:0,0:0,0:34,34 chr3 1342 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:28,28:0,0:0,0:0,0 50:0:0:0:47,47:0,0:0,0:3,3 chr3 1351 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:4,4:0,0:26,26 52:0:0:0:6,6:0,0:0,0:46,46 chr3 1416 . G T . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:26,26:0,0 43:0:0:0:0,0:0,0:39,39:4,4 chr3 1446 . C A,T . QSS_ref NT=het;QSS=105;QSS_NT=41;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:6,6:26,26:0,0:0,0 45:0:0:0:0,0:41,41:0,0:4,4 chr3 1479 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:1,1:27,27:0,0 57:0:0:0:1,1:0,0:56,56:0,0 chr3 1513 . G A . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:2,2:27,27:0,0 60:0:0:0:7,7:0,0:53,53:0,0 chr3 1534 . C A,T . QSS_ref NT=het;QSS=89;QSS_NT=38;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:4,4:23,23:0,0:0,0 59:0:0:0:0,0:52,52:0,0:7,7 chr3 1663 . C G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:35,35:0,0:0,0 45:0:0:0:0,0:38,38:7,7:0,0 chr3 1736 . T A,G . QSS_ref NT=het;QSS=43;QSS_NT=29;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:3,3:0,0:0,0:28,28 40:0:0:0:0,0:0,0:5,5:35,35 chr3 1790 . A T . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:25,25:0,0:0,0:0,0 53:0:0:0:52,52:0,0:0,0:1,1 chr3 1797 . T A,C . QSS_ref NT=het;QSS=287;QSS_NT=60;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:8,8:0,0:0,0:19,19 48:0:0:0:0,0:10,10:0,0:38,38 chr3 1860 . A G,T . QSS_ref NT=het;QSS=106;QSS_NT=39;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:23,23:0,0:0,0:4,4 61:0:0:0:51,51:0,0:10,10:0,0 chr3 1904 . C G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:29,29:0,0:3,3 52:0:0:0:0,0:46,46:6,6:0,0 chr3 1949 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:0,0:34,34 54:0:0:0:0,0:9,9:0,0:45,45 chr3 2026 . C A,G . QSS_ref NT=het;QSS=61;QSS_NT=3;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:3,3:37,37:0,0:0,0 40:0:0:0:0,0:34,34:6,6:0,0 chr3 2203 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:35,35:0,0:1,1 55:0:0:0:0,0:53,53:0,0:2,2 chr3 2265 . A C,G . QSS_ref NT=het;QSS=15;QSS_NT=15;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:26,26:2,2:0,0:0,0 54:0:0:0:51,51:0,0:3,3:0,0 chr3 2371 . A G,T . QSS_ref NT=het;QSS=52;QSS_NT=33;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:23,23:0,0:3,3:0,0 39:0:0:0:36,36:0,0:0,0:3,3 chr3 2397 . G A . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:33,33:0,0 41:0:0:0:2,2:0,0:39,39:0,0 chr3 2462 . G A,T . QSS_ref NT=het;QSS=133;QSS_NT=10;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 43:0:0:0:5,5:0,0:38,38:0,0 40:0:0:0:0,0:0,0:33,33:7,7 chr3 2518 . A C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:26,26:0,0:0,0:14,14 47:0:0:0:38,38:9,9:0,0:0,0 chr3 2593 . G C . PASS NT=ref;QSS=19;QSS_NT=19;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:33,33:0,0 47:0:0:0:0,0:6,6:41,41:0,0 chr3 2605 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:2,2:0,0:32,32:0,0 40:0:0:0:0,0:4,4:36,36:0,0 chr3 2776 . T A . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:1,1:25,25 45:0:0:0:1,1:0,0:0,0:44,44 chr3 2785 . T A,C . QSS_ref NT=het;QSS=321;QSS_NT=68;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:12,12:0,0:0,0:15,15 40:0:0:0:0,0:9,9:0,0:31,31 chr3 2914 . C A . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:25,25:0,0:0,0 55:0:0:0:3,3:52,52:0,0:0,0 chr3 2950 . C G,T . QSS_ref NT=het;QSS=153;QSS_NT=37;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:25,25:0,0:6,6 43:0:0:0:0,0:34,34:9,9:0,0 chr3 3076 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:37,37:0,0 42:0:0:0:2,2:0,0:40,40:0,0 chr3 3082 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:1,1:0,0:0,0:38,38 45:0:0:0:0,0:0,0:4,4:41,41 chr3 3103 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:35,35:5,5:0,0:0,0 41:0:0:0:37,37:4,4:0,0:0,0 chr3 3146 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:3,3:0,0:0,0:29,29 49:0:0:0:0,0:0,0:0,0:49,49 chr3 3186 . C G,T . QSS_ref NT=het;QSS=160;QSS_NT=61;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:17,17:0,0:6,6 45:0:0:0:0,0:40,40:5,5:0,0 chr3 3223 . A G . PASS NT=ref;QSS=25;QSS_NT=25;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 19:0:0:0:19,19:0,0:0,0:0,0 57:0:0:0:41,41:0,0:16,16:0,0 chr3 3397 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:28,28:3,3:0,0:0,0 47:0:0:0:45,45:2,2:0,0:0,0 chr3 3439 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:26,26:3,3:0,0 41:0:0:0:0,0:39,39:2,2:0,0 chr3 3538 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:0,0:37,37 50:0:0:0:2,2:0,0:0,0:48,48 chr3 3568 . G A,T . QSS_ref NT=het;QSS=360;QSS_NT=57;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:12,12:0,0:30,30:0,0 48:0:0:0:0,0:0,0:32,32:16,16 chr3 3685 . C A . PASS NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:27,27:0,0:0,0 54:0:0:0:1,1:53,53:0,0:0,0 chr3 3700 . G A,T . QSS_ref NT=het;QSS=11;QSS_NT=11;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:2,2:0,0:18,18:0,0 52:0:0:0:0,0:0,0:47,47:5,5 chr3 3746 . G A,C . QSS_ref NT=het;QSS=122;QSS_NT=44;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:4,4:24,24:0,0 49:0:0:0:7,7:0,0:42,42:0,0 chr3 3816 . A G . QSS_ref NT=ref;QSS=4;QSS_NT=3;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:40,40:2,2:0,0:0,0 51:0:0:0:48,48:0,0:3,3:0,0 chr3 3846 . A C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 45:0:0:0:40,40:0,0:0,0:5,5 48:0:0:0:44,44:4,4:0,0:0,0 chr3 3892 . T A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:1,1:0,0:33,33 46:0:0:0:2,2:0,0:0,0:44,44 chr3 3905 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:2,2:0,0:35,35:0,0 44:0:0:0:0,0:0,0:44,44:0,0 chr3 3921 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:37,37:0,0:0,0:1,1 54:0:0:0:52,52:0,0:2,2:0,0 chr3 3978 . T C,G . QSS_ref NT=het;QSS=43;QSS_NT=21;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:3,3:0,0:28,28 58:0:0:0:0,0:0,0:3,3:55,55 chr3 4015 . T A . PASS NT=ref;QSS=17;QSS_NT=17;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:0,0:29,29 54:0:0:0:4,4:0,0:0,0:50,50 chr3 4038 . A C,T . QSS_ref NT=het;QSS=153;QSS_NT=32;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:27,27:0,0:0,0:7,7 53:0:0:0:43,43:10,10:0,0:0,0 chr3 4145 . C G . PASS NT=ref;QSS=17;QSS_NT=17;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:31,31:0,0:1,1 53:0:0:0:0,0:49,49:4,4:0,0 chr3 4204 . T A,C . QSS_ref NT=het;QSS=120;QSS_NT=54;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:5,5:0,0:0,0:17,17 55:0:0:0:0,0:4,4:0,0:51,51 chr3 4231 . G A,C . QSS_ref NT=het;QSS=62;QSS_NT=28;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:3,3:25,25:0,0 54:0:0:0:7,7:0,0:47,47:0,0 chr3 4307 . A . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AA->AA;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 45:7:0:0:37,37:0,0:0,0:1,1 45:5:0:0:38,38:2,2:0,0:0,0 chr3 4318 . G A . QSS_ref NT=ref;QSS=6;QSS_NT=6;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 44:9:0:0:0,0:0,0:34,34:1,1 49:11:0:0:1,1:0,0:37,38:0,0 chr3 4327 . C A,T . QSS_ref NT=het;QSS=16;QSS_NT=16;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:9:0:0:2,2:28,28:0,0:0,0 48:12:0:0:0,0:34,35:0,0:2,2 chr3 4344 . G T . BCNoise NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:21:0:0:0,0:0,0:15,22:0,0 42:20:0:0:0,0:0,0:18,22:4,4 chr3 4355 . C T . BCNoise;QSS_ref NT=het;QSS=5;QSS_NT=4;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:22:0:0:1,3:14,25:0,0:0,0 37:23:0:0:0,1:12,20:0,0:2,3 chr3 4384 . C A,T . QSS_ref NT=het;QSS=124;QSS_NT=41;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:7:0:0:0,0:22,22:0,0:4,4 45:10:0:0:7,7:28,28:0,0:0,0 chr3 4500 . C A,G . QSS_ref NT=het;QSS=196;QSS_NT=57;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:5:0:0:5,5:21,21:0,0:0,0 53:8:0:0:0,0:38,38:7,7:0,0 chr3 4544 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:2:0:0:0,0:0,0:26,26:2,2 61:2:0:0:2,2:0,0:57,57:0,0 chr3 4576 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:25,25:0,0:9,9 59:0:0:0:13,13:46,46:0,0:0,0 chr3 4677 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:29,29:1,1 41:0:0:0:1,1:0,0:40,40:0,0 chr3 4739 . C G,T . QSS_ref NT=het;QSS=71;QSS_NT=45;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:24,24:3,3:0,0 34:0:0:0:0,0:27,27:0,0:7,7 chr3 4790 . A T . QSS_ref NT=het;QSS=2;QSS_NT=2;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:2:0:0:32,32:0,0:0,0:4,4 49:11:0:0:36,36:0,0:2,2:0,0 chr3 4821 . A T . PASS NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:7:0:0:28,29:0,0:1,1:0,0 56:21:0:0:31,33:0,0:0,0:4,4 chr3 4842 . G A,T . QSS_ref;BCNoise NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:12:0:0:0,1:0,0:14,15:8,8 62:30:0:0:3,3:0,0:29,30:0,0 chr3 4870 . A G . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:5:0:0:24,24:0,0:0,0:0,0 64:10:0:0:50,52:0,0:4,4:0,0 chr3 4937 . C G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:26,26:0,0:0,0 53:0:0:0:0,0:52,52:1,1:0,0 chr3 4987 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:2,2:0,0:0,0:28,28 47:0:0:0:0,0:0,0:3,3:44,44 chr3 5047 . G A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:9,9:0,0:18,18:0,0 51:0:0:0:0,0:9,9:42,42:0,0 chr3 5140 . G C . QSS_ref NT=het;QSS=31;QSS_NT=2;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:2,2:0,0:33,33:0,0 45:0:0:0:0,0:9,9:36,36:0,0 chr3 5193 . A C,G . QSS_ref NT=het;QSS=378;QSS_NT=58;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:22,22:9,9:0,0:0,0 55:0:0:0:35,35:0,0:20,20:0,0 chr3 5448 . C G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:24,24:0,0:5,5 49:0:0:0:0,0:47,47:2,2:0,0 chr3 5490 . A T . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:30,30:0,0:0,0:0,0 56:0:0:0:54,54:0,0:0,0:2,2 chr3 5502 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:30,30:0,0 55:0:0:0:2,2:0,0:53,53:0,0 chr3 5536 . C A,T . QSS_ref NT=het;QSS=17;QSS_NT=17;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:27,27:0,0:2,2 46:0:0:0:3,3:43,43:0,0:0,0 chr3 5580 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:1,1:0,0:0,0:32,32 45:0:0:0:0,0:0,0:5,5:40,40 chr3 5673 . A C,G . QSS_ref NT=het;QSS=69;QSS_NT=21;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:32,32:3,3:0,0:0,0 56:0:0:0:45,45:0,0:11,11:0,0 chr3 5706 . T A . PASS NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:0,0:0,0:36,36 51:0:0:0:1,1:0,0:0,0:50,50 chr3 5726 . C A,G . QSS_ref NT=het;QSS=94;QSS_NT=33;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:29,29:4,4:0,0 47:0:0:0:4,4:43,43:0,0:0,0 chr3 5902 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:2,2:28,28 44:0:0:0:0,0:0,0:0,0:44,44 chr3 5926 . G T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:0,0:2,2:38,38:0,0 50:0:0:0:0,0:0,0:47,47:3,3 chr3 5983 . T A,C . QSS_ref NT=het;QSS=141;QSS_NT=33;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:6,6:0,0:30,30 47:0:0:0:7,7:0,0:0,0:40,40 chr3 6090 . T C . PASS NT=ref;QSS=18;QSS_NT=18;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:0,0:34,34 47:0:0:0:0,0:2,2:0,0:45,45 chr3 6141 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:33,33:0,0:4,4:0,0 53:0:0:0:48,48:0,0:5,5:0,0 chr3 6343 . A T . BCNoise;QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:11:0:0:14,14:0,0:0,0:0,0 58:13:0:0:44,46:0,0:0,0:1,1 chr3 6355 . A G,T . QSS_ref;BCNoise NT=het;QSS=2;QSS_NT=2;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:11:0:0:12,12:0,0:1,1:0,0 58:17:0:0:40,44:0,0:0,0:1,1 chr3 6416 . G A,C . QSS_ref NT=het;QSS=178;QSS_NT=57;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:2:0:0:0,0:5,5:21,21:0,0 50:11:0:0:9,9:0,0:30,30:0,0 chr3 6488 . T C,G . QSS_ref NT=het;QSS=38;QSS_NT=14;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:3,3:0,0:31,31 53:0:0:0:0,0:0,0:3,3:50,50 chr3 6534 . G C . PASS NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:27,27:0,0 53:0:0:0:0,0:3,3:50,50:0,0 chr3 6539 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:1,1:0,0:27,27:0,0 49:0:0:0:0,0:0,0:49,49:0,0 chr3 6554 . A G . QSS_ref NT=ref;QSS=13;QSS_NT=13;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:24,24:0,0:0,0:0,0 49:0:0:0:48,48:0,0:1,1:0,0 chr3 6576 . T C . QSS_ref NT=het;QSS=2;QSS_NT=2;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:2,2:0,0:0,0:25,25 48:0:0:0:0,0:7,7:0,0:41,41 chr3 6645 . C . . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=CC->CC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:32,32:0,0:0,0 62:0:0:0:0,0:59,59:3,3:0,0 chr3 6775 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:27,27:0,0 58:0:0:0:1,1:0,0:57,57:0,0 chr3 6793 . G C,T . QSS_ref NT=het;QSS=69;QSS_NT=48;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:21,21:5,5 55:0:0:0:0,0:3,3:52,52:0,0 chr3 6825 . T C . PASS NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:0,0:28,28 58:0:0:0:0,0:7,7:0,0:51,51 chr3 6851 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:22,22:8,8:0,0 59:0:0:0:0,0:59,59:0,0:0,0 chr3 6856 . G T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:32,32:0,0 58:0:0:0:0,0:0,0:46,46:12,12 chr3 6902 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:29,29:0,0 53:0:0:0:0,0:0,0:52,52:1,1 chr3 6959 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:21,21:0,0:0,0:2,2 53:1:0:0:44,44:0,0:0,0:8,8 chr3 7002 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:5:0:0:0,0:0,0:3,3:18,19 47:6:0:0:0,0:0,0:0,0:41,43 chr3 7028 . T G . QSS_ref;BCNoise NT=ref;QSS=6;QSS_NT=6;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 17:0:10:0:0,0:0,0:0,0:17,17 29:14:12:0:0,0:0,1:2,2:13,13 chr3 7116 . T A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:3:0:0:0,0:0,0:0,0:28,28 59:1:0:0:2,2:0,0:0,0:56,56 chr3 7130 . A T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:27,27:0,0:0,0:0,0 63:0:0:0:62,62:0,0:0,0:1,1 chr3 7138 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:29,29:0,0 61:0:0:0:1,1:0,0:60,60:0,0 chr3 7144 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:2,2:0,0:0,0:28,28 57:0:0:0:0,0:4,4:0,0:53,53 chr3 7229 . G C,T . QSS_ref NT=het;QSS=64;QSS_NT=47;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:3,3:20,20:0,0 39:0:0:0:0,0:0,0:35,35:4,4 chr3 7272 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:0,0:25,25 36:0:0:0:1,1:0,0:0,0:35,35 chr3 7289 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:1,1:26,26:0,0:0,0 37:0:0:0:3,3:34,34:0,0:0,0 chr3 7353 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:6,6:23,23:0,0 54:0:0:0:1,1:0,0:53,53:0,0 chr3 7431 . G A,T . QSS_ref NT=het;QSS=116;QSS_NT=51;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:4:0:0:0,0:0,0:21,21:6,6 51:5:0:0:4,4:0,0:42,42:0,0 chr3 7477 . G T . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:6:0:0:0,0:0,0:18,18:0,0 40:12:0:0:0,0:0,0:25,27:3,3 chr3 7577 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:37,37:0,0 49:6:0:0:8,8:0,0:35,35:0,0 chr3 7654 . C . . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=CC->CC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:31,31:2,2:0,0 44:0:0:0:0,0:42,42:0,0:2,2 chr3 7669 . T G . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:1,1:0,0:0,0:27,27 42:0:0:0:0,0:0,0:1,1:41,41 chr3 7670 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:0,0:28,28 42:0:0:0:0,0:0,0:2,2:40,40 chr3 7682 . T C,G . QSS_ref NT=het;QSS=319;QSS_NT=60;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:8,8:0,0:19,19 40:0:0:0:0,0:0,0:14,14:26,26 chr3 7773 . G A,C . QSS_ref NT=het;QSS=146;QSS_NT=72;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:14,14:0,0:18,18:0,0 48:0:0:0:0,0:3,3:45,45:0,0 chr3 7802 . T G . PASS NT=ref;QSS=34;QSS_NT=34;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:0,0:29,29 55:0:0:0:0,0:0,0:17,17:38,38 chr3 7888 . A G . PASS NT=ref;QSS=15;QSS_NT=15;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:26,26:0,0:0,0:0,0 52:0:0:0:47,47:0,0:5,5:0,0 chr3 7931 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:32,32:0,0 50:0:0:0:0,0:0,0:49,49:1,1 chr3 7950 . T G . PASS NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:0,0:28,28 49:0:0:0:0,0:0,0:5,5:44,44 chr3 8005 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:1,1:28,28:0,0:0,0 43:0:0:0:0,0:40,40:3,3:0,0 chr3 8026 . C G,T . QSS_ref NT=het;QSS=99;QSS_NT=27;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:28,28:4,4:0,0 47:0:0:0:0,0:42,42:0,0:5,5 chr3 8087 . G C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:26,26:4,4 51:0:0:0:0,0:5,5:46,46:0,0 chr3 8122 . A C,T . QSS_ref NT=het;QSS=106;QSS_NT=39;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:23,23:0,0:0,0:4,4 53:0:0:0:49,49:4,4:0,0:0,0 chr3 8183 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:2:0:0:0,0:0,0:7,7:18,18 66:13:0:0:1,1:0,0:0,0:52,52 chr3 8352 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:28,28:0,0:1,1 87:0:0:0:0,0:86,92:1,1:0,0 chr3 8362 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:26,26:2,2:0,0:0,0 81:0:0:0:75,80:0,0:6,6:0,0 chr3 8391 . A C . PASS NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:31,31:0,0:1,1:0,0 65:0:0:0:62,72:3,3:0,0:0,0 chr3 8418 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:31,31:0,0:2,2 54:0:0:0:0,0:50,63:0,0:4,4 chr3 8443 . A T . QSS_ref NT=het;QSS=3;QSS_NT=3;SGT=AT->AT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:32,32:0,0:2,2:0,0 44:0:0:0:41,57:0,0:0,0:3,3 chr3 9917 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:31,31:0,0:0,0:2,2 0:0:0:0:0,0:0,0:0,0:0,0 chr3 10500 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:22,22:0,0:2,2:0,0 0:0:0:0:0,0:0,0:0,0:0,0 chr3 10891 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:1,1:0,0:0,0:24,24 0:0:0:0:0,0:0,0:0,0:0,0 chr3 12754 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:20,20:9,9:0,0 72:0:0:0:0,0:72,73:0,0:0,0 chr3 13044 . G A,C . QSS_ref NT=het;QSS=161;QSS_NT=39;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:5,5:0,0:28,28:0,0 49:0:0:0:0,0:5,5:44,44:0,0 chr3 13079 . C G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:22,22:2,2:0,0 46:0:0:0:0,0:44,44:0,0:2,2 chr3 13102 . T A . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:0,0:24,24 47:0:0:0:3,3:0,0:0,0:44,44 chr3 13114 . A G,T . QSS_ref NT=het;QSS=26;QSS_NT=25;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:22,22:0,0:0,0:2,2 44:0:0:0:39,39:0,0:5,5:0,0 chr3 13153 . C G . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:26,26:0,0:0,0 49:1:0:0:0,0:47,47:1,1:0,0 chr3 13196 . C A,T . QSS_ref NT=het;QSS=111;QSS_NT=43;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:2:0:0:4,4:21,21:0,0:0,0 49:10:0:0:0,0:35,35:0,0:4,4 chr3 13224 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:6:0:0:0,0:2,2:22,23:0,0 48:14:0:0:3,3:0,0:31,32:0,0 chr3 13324 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:1:0:0:1,1:22,22:0,0:0,0 57:3:0:0:9,9:45,45:0,0:0,0 chr3 13366 . C G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:30,30:0,0:0,0 45:0:0:0:0,0:42,42:3,3:0,0 chr3 13410 . A T . PASS NT=ref;QSS=18;QSS_NT=18;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:27,27:0,0:0,0:0,0 48:0:0:0:41,41:0,0:0,0:7,7 chr3 13459 . A C,T . QSS_ref NT=het;QSS=18;QSS_NT=17;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:27,27:3,3:0,0:0,0 43:0:0:0:39,39:0,0:0,0:4,4 chr3 13558 . C A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:4,4:20,20:0,0:0,0 60:0:0:0:0,0:51,51:9,9:0,0 chr3 13616 . A C,T . QSS_ref NT=het;QSS=165;QSS_NT=51;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:24,24:6,6:0,0:0,0 62:0:0:0:37,37:0,0:0,0:25,25 chr3 13734 . C G,T . QSS_ref NT=het;QSS=42;QSS_NT=15;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:34,34:3,3:0,0 46:0:0:0:0,0:40,40:0,0:6,6 chr3 13870 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:0,0:19,22:3,3 72:0:0:0:0,0:0,0:72,72:0,0 chr3 13885 . G A,C . QSS_ref NT=het;QSS=7;QSS_NT=7;SGT=CG->AG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:2,2:23,24:0,0 66:0:0:0:6,6:0,0:60,60:0,0 chr3 13923 . A C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:27,27:3,3:0,0:0,0 55:0:0:0:47,47:0,0:0,0:8,8 chr3 14066 . G A . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:25,25:0,0 42:0:0:0:1,1:0,0:41,41:0,0 chr3 14086 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:28,28:0,0:2,2 47:0:0:0:0,0:43,43:0,0:4,4 chr3 14340 . G T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:0,0:21,25:1,1 48:0:0:0:0,0:0,0:48,48:0,0 chr3 14364 . A C . QSS_ref NT=ref;QSS=9;QSS_NT=9;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 14:0:0:0:14,18:0,0:0,0:0,0 50:0:0:0:47,47:3,3:0,0:0,0 chr3 14412 . G A,T . QSS_ref NT=het;QSS=149;QSS_NT=58;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:5,5:0,0:15,15:0,0 49:0:0:0:0,0:0,0:41,41:8,8 chr3 14570 . A G . PASS NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:33,33:0,0:0,0:0,0 53:0:0:0:52,52:0,0:1,1:0,0 chr3 14645 . C A,T . QSS_ref NT=het;QSS=86;QSS_NT=51;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:18,18:0,0:3,3 56:0:0:0:8,8:48,48:0,0:0,0 chr3 14691 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:22,22:1,1 47:0:0:0:2,2:0,0:45,45:0,0 chr3 14722 . C G . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:23,23:0,0:0,0 44:0:0:0:0,0:42,42:2,2:0,0 chr3 14740 . C G . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:25,25:0,0:0,0 50:0:0:0:0,0:46,46:4,4:0,0 chr3 14777 . A C . QSS_ref NT=het;QSS=18;QSS_NT=13;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:27,27:0,0:0,0:2,2 56:0:0:0:50,50:6,6:0,0:0,0 chr3 14805 . G C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:25,25:0,0 51:0:0:0:0,0:1,1:50,50:0,0 chr3 14915 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:27,27:0,0:3,3 53:0:0:0:13,13:40,40:0,0:0,0 chr3 15005 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:4:0:0:0,0:22,22:0,0:2,2 52:7:0:0:1,1:44,44:0,0:0,0 chr3 15030 . C A,G . QSS_ref NT=het;QSS=138;QSS_NT=51;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:7:0:0:0,0:17,17:4,4:0,0 52:11:0:0:6,6:35,35:0,0:0,0 chr3 15057 . A G . QSS_ref;BCNoise NT=ref;QSS=1;QSS_NT=1;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:12:0:0:17,19:0,0:0,0:1,1 53:21:0:0:28,31:0,0:4,4:0,0 chr3 15110 . A C,G . QSS_ref NT=het;QSS=49;QSS_NT=46;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:4:0:0:16,16:0,0:3,3:0,0 48:9:0:0:31,31:8,8:0,0:0,0 chr3 15162 . A C,T . QSS_ref NT=het;QSS=165;QSS_NT=47;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:21,21:0,0:0,0:5,5 37:3:0:0:28,28:6,6:0,0:0,0 chr3 15247 . A C,G . QSS_ref NT=het;QSS=175;QSS_NT=56;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:21,21:0,0:6,6:0,0 56:0:0:0:50,50:6,6:0,0:0,0 chr3 15298 . C G . PASS NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:26,26:0,0:0,0 50:0:0:0:0,0:48,48:2,2:0,0 chr3 15321 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:24,24:0,0:0,0:4,4 54:0:0:0:46,46:0,0:0,0:8,8 chr3 15398 . G A,C . QSS_ref NT=het;QSS=331;QSS_NT=56;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:10,10:25,25:0,0 57:0:0:0:12,12:0,0:45,45:0,0 chr3 15446 . A G,T . QSS_ref NT=het;QSS=159;QSS_NT=43;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:23,23:0,0:0,0:5,5 56:3:0:0:45,45:0,0:8,8:0,0 chr3 15554 . T C . QSS_ref NT=het;QSS=3;QSS_NT=1;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:6:0:0:1,1:0,0:0,0:16,16 58:15:0:0:0,0:3,3:0,0:40,40 chr3 15579 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:4:0:0:2,2:0,0:0,0:20,20 60:7:0:0:0,0:2,2:0,0:51,51 chr3 15598 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:2:0:0:0,0:0,0:23,23:0,0 63:7:0:0:3,3:0,0:53,53:0,0 chr3 15631 . C G . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:30,30:0,0:1,1 61:0:0:0:0,0:59,59:2,2:0,0 chr3 15639 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:9,9:0,0:22,22:0,0 56:0:0:0:0,0:0,0:56,56:0,0 chr3 15710 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:0,0:3,3:0,0:39,39 47:0:0:0:2,2:0,0:0,0:45,45 chr3 15739 . T C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:0,0:8,8:30,30 51:0:0:0:0,0:4,4:0,0:47,47 chr3 15771 . T C . PASS NT=ref;QSS=26;QSS_NT=26;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:0,0:34,34 48:0:0:0:0,0:7,7:0,0:41,41 chr3 15812 . G A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:8,8:0,0:20,20:0,0 51:0:0:0:0,0:0,0:44,44:7,7 chr3 15945 . G C,T . QSS_ref NT=het;QSS=15;QSS_NT=12;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:2,2:32,32:0,0 51:0:0:0:0,0:0,0:46,46:5,5 chr3 15977 . T C . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:2,2:28,28 48:0:0:0:0,0:4,4:0,0:44,44 chr3 15991 . G A . QSS_ref NT=het;QSS=2;QSS_NT=2;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:2,2:0,0:31,31:0,0 48:0:0:0:0,0:0,0:46,46:2,2 chr3 16094 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:0,0:29,29 48:0:0:0:0,0:6,6:0,0:42,42 chr3 16220 . G A,T . QSS_ref NT=het;QSS=562;QSS_NT=60;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 47:0:0:0:0,0:0,0:32,32:15,15 45:0:0:0:17,17:0,0:28,28:0,0 chr3 16365 . A C,G . QSS_ref NT=het;QSS=90;QSS_NT=47;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 19:0:0:0:16,18:3,3:0,0:0,0 66:0:0:0:43,43:0,0:23,23:0,0 chr3 16511 . G A,T . QSS_ref NT=het;QSS=172;QSS_NT=61;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:3:0:0:0,0:0,0:15,15:6,6 48:8:0:0:5,5:0,0:35,35:0,0 chr3 16541 . A C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:6:0:0:21,22:1,1:0,0:0,0 50:19:0:0:30,33:1,1:0,0:0,0 chr3 16600 . T A,C . QSS_ref NT=het;QSS=434;QSS_NT=71;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:5:0:0:0,0:12,12:0,0:15,15 59:7:0:0:14,14:0,0:0,0:38,38 chr3 16722 . T A . PASS NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:0,0:29,29 61:0:0:0:1,1:0,0:0,0:60,60 chr3 16734 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:29,29:0,0:0,0:1,1 56:0:0:0:53,53:3,3:0,0:0,0 chr3 16744 . C A . QSS_ref NT=het;QSS=2;QSS_NT=2;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:29,29:2,2:0,0 60:0:0:0:6,6:54,54:0,0:0,0 chr3 16795 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:27,27:4,4:0,0 58:0:0:0:0,0:53,53:5,5:0,0 chr3 16925 . A G . QSS_ref NT=conflict;QSS=3070;QSS_NT=0;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 17:0:0:0:16,23:0,0:0,0:1,1 79:0:0:0:71,71:0,0:8,8:0,0 chr3 16979 . G A . QSS_ref NT=conflict;QSS=3070;QSS_NT=0;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 13:0:0:0:0,0:0,2:13,14:0,0 78:0:0:0:11,11:0,0:67,70:0,0 chr3 17516 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 16:0:0:0:4,4:0,0:12,20:0,0 44:0:0:0:0,0:0,0:44,50:0,0 chr3 17849 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:3,3:22,22:0,0:0,0 53:0:0:0:0,0:53,53:0,0:0,0 chr3 18244 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:31,31:0,0:1,1:0,0 40:0:0:0:40,40:0,0:0,0:0,0 chr3 18352 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:27,27:3,3 62:0:0:0:0,0:0,0:62,62:0,0 chr3 18685 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:5,5:0,0:0,0:32,32 48:0:0:0:0,0:0,0:0,0:48,48 chr3 18720 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:35,35:1,1:0,0:0,0 54:0:0:0:54,54:0,0:0,0:0,0 chr3 18922 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:26,26:3,3:0,0 48:0:0:0:0,0:48,48:0,0:0,0 chr3 19051 . A C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:34,34:1,1:0,0:0,0 64:0:0:0:64,64:0,0:0,0:0,0 chr3 19176 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:24,24:0,0:9,9 59:0:0:0:0,0:59,59:0,0:0,0 chr3 19308 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:3,3:0,0:0,0:25,25 55:0:0:0:0,0:0,0:0,0:55,55 chr3 19322 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:23,23:3,3:0,0 54:0:0:0:0,0:54,54:0,0:0,0 chr3 19393 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:29,29:0,0:0,0:4,4 46:0:0:0:46,46:0,0:0,0:0,0 chr3 19711 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:7,7:0,0:30,30 61:0:0:0:0,0:0,0:0,0:61,61 chr3 19814 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:0,0:36,36:0,0:3,3 52:0:0:0:0,0:52,52:0,0:0,0 chr3 20223 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:2,2:35,35:0,0:0,0 46:0:0:0:0,0:46,46:0,0:0,0 chr3 20263 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:4,4:0,0:29,29 47:0:0:0:0,0:0,0:0,0:47,47 chr3 20635 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:30,30:0,0:4,4 53:0:0:0:0,0:53,53:0,0:0,0 chr3 20683 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:0,0:33,33:0,0:7,7 54:0:0:0:0,0:54,54:0,0:0,0 chr3 20913 . C T . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:23,23:0,0:11,11 41:0:0:0:0,0:41,41:0,0:0,0 chr3 21024 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:36,36:2,2:0,0:0,0 50:0:0:0:50,50:0,0:0,0:0,0 chr3 21106 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:4,4:28,28:0,0 60:0:0:0:0,0:0,0:60,64:0,0 chr3 21168 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:2,2:0,0:0,0:28,28 46:0:0:0:0,0:0,0:0,0:46,60 chr3 21257 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:0,0:34,34:0,0:7,7 35:0:0:0:0,0:35,58:0,0:0,0 chr3 21672 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:1,1:30,30 52:0:0:0:0,0:0,0:0,0:52,59 chr3 21734 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 43:0:0:0:4,4:0,0:0,0:39,39 50:0:0:0:0,0:0,0:0,0:50,50 chr3 21785 . T A . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:2:0:0:11,11:0,0:0,0:20,20 52:9:0:0:0,0:0,0:0,0:43,43 chr3 22128 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:1:0:0:9,9:24,24:0,0:0,0 54:2:0:0:9,9:43,43:0,0:0,0 chr3 22177 . C T . PASS NT=ref;QSS=19;QSS_NT=19;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:36,36:0,0:0,0 54:0:0:0:0,0:51,51:0,0:3,3 chr3 22251 . T C,G . QSS_ref NT=het;QSS=185;QSS_NT=41;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:7:0:0:0,0:0,0:5,5:23,24 41:7:0:0:0,0:14,14:0,0:20,21 chr3 22412 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:20,20:0,0:12,12:0,0 50:0:0:0:36,36:14,14:0,0:0,0 chr3 22683 . G C,T . QSS_ref NT=het;QSS=43;QSS_NT=28;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:25,25:3,3 53:0:0:0:0,0:8,8:45,45:0,0 chr3 22700 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:0,0:28,28 53:0:0:0:0,0:3,3:0,0:50,50 chr3 22713 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:0,0:31,31 52:0:0:0:0,0:0,0:6,6:46,46 chr3 22753 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:24,24:4,4 45:0:0:0:0,0:1,1:44,44:0,0 chr3 22799 . C G,T . QSS_ref NT=het;QSS=17;QSS_NT=17;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:20,20:0,0:2,2 44:0:0:0:0,0:41,41:3,3:0,0 chr3 22847 . A C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:19,19:0,0:0,0:3,3 64:0:0:0:53,53:11,11:0,0:0,0 chr3 22883 . C A,T . QSS_ref NT=het;QSS=152;QSS_NT=62;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:15,15:0,0:6,6 59:0:0:0:9,9:50,50:0,0:0,0 chr3 23007 . T A,C . QSS_ref NT=het;QSS=17;QSS_NT=17;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:2,2:0,0:26,26 51:0:0:0:4,4:0,0:0,0:47,47 chr3 23045 . G A,C . QSS_ref NT=het;QSS=130;QSS_NT=59;SGT=CG->AG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:9,9:16,21:0,0 43:0:0:0:4,4:0,0:39,39:0,0 chr3 23081 . A C . PASS NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 17:0:0:0:17,25:0,0:0,0:0,0 38:0:0:0:26,26:12,12:0,0:0,0 chr3 23199 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:23,23:0,0:0,0 65:0:0:0:0,0:62,62:0,0:3,3 chr3 23242 . T A . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:1,1:25,25 62:0:0:0:4,4:0,0:0,0:58,58 chr3 23360 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:1,1:25,25 49:0:0:0:0,0:8,8:0,0:41,41 chr3 23405 . G A,T . QSS_ref NT=het;QSS=250;QSS_NT=54;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:21,21:7,7 44:0:0:0:12,12:0,0:32,32:0,0 chr3 23500 . A G,T . QSS_ref NT=het;QSS=133;QSS_NT=49;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:18,18:0,0:0,0:4,4 48:0:0:0:40,40:0,0:8,8:0,0 chr3 23529 . T A,G . QSS_ref NT=het;QSS=68;QSS_NT=52;SGT=GT->AT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 16:0:0:0:0,0:0,0:3,3:13,14 47:3:0:0:7,7:0,0:0,0:37,37 chr3 23557 . T A . QSS_ref NT=ref;QSS=9;QSS_NT=9;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 14:1:0:0:0,0:0,0:0,0:13,17 42:4:0:0:1,1:0,0:0,0:37,37 chr3 23707 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:36,36:0,0:0,0:0,0 38:0:0:0:34,34:0,0:4,4:0,0 chr3 23760 . A C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:1:0:0:33,33:0,0:0,0:0,0 37:1:0:0:34,34:2,2:0,0:0,0 chr3 23779 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:1:0:0:0,0:3,3:0,0:28,28 39:1:0:0:0,0:0,0:1,1:37,37 chr3 23827 . C . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CC->CC;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:7:0:0:0,0:20,20:0,0:0,0 42:10:0:0:2,2:30,32:0,0:0,0 chr3 23836 . G C,T . BCNoise;QSS_ref NT=het;QSS=94;QSS_NT=61;SGT=GT->CG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:11:0:0:0,0:0,0:11,13:5,5 39:16:0:0:0,0:3,3:20,28:0,0 chr3 23857 . T G . QSS_ref NT=ref;QSS=7;QSS_NT=7;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 10:0:12:0:0,0:0,0:0,0:10,10 24:7:13:0:0,0:0,0:1,1:16,16 chr3 23902 . A G . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:3:0:0:22,22:0,0:0,0:0,0 41:7:0:0:33,33:0,0:1,1:0,0 chr3 24022 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:0,0:29,29 54:0:0:0:1,1:0,0:0,0:53,53 chr3 24064 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:2,2:24,24:0,0 49:0:0:0:0,0:5,5:44,44:0,0 chr3 24100 . T A,G . QSS_ref NT=het;QSS=225;QSS_NT=63;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:7,7:0,0:0,0:17,17 44:0:0:0:0,0:0,0:10,10:34,34 chr3 24206 . G C,T . QSS_ref NT=het;QSS=101;QSS_NT=28;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:4,4:31,31:0,0 38:0:0:0:0,0:0,0:34,34:4,4 chr3 24239 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:5,5:0,0:0,0:27,27 37:0:0:0:0,0:0,0:7,7:30,30 chr3 24303 . A C . QSS_ref NT=het;QSS=2;QSS_NT=2;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:31,31:0,0:2,2:0,0 55:0:0:0:53,53:2,2:0,0:0,0 chr3 24391 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:2:0:0:0,0:0,0:29,29:2,2 59:1:0:0:0,0:0,0:53,53:5,5 chr3 24421 . C G . PASS NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:3:0:0:0,0:27,27:0,0:0,0 47:6:0:0:0,0:40,40:1,1:0,0 chr3 24502 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:6:0:0:0,0:0,0:24,24:0,0 40:10:0:0:3,4:0,0:27,28:0,0 chr3 24574 . G T . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:3:0:0:0,0:0,0:28,28:5,5 51:1:0:0:2,2:0,0:48,48:0,0 chr3 24619 . G C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:25,25:6,6 69:0:0:0:0,0:7,7:62,62:0,0 chr3 24713 . A C,T . QSS_ref NT=het;QSS=92;QSS_NT=30;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:26,26:5,5:0,0:0,0 52:0:0:0:48,48:0,0:0,0:4,4 chr3 24781 . T C,G . QSS_ref NT=het;QSS=60;QSS_NT=34;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:3,3:0,0:26,26 57:0:0:0:0,0:0,0:7,7:50,50 chr3 24877 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:5,5:29,29 56:0:0:0:1,1:0,0:0,0:55,55 chr3 24963 . G A . PASS NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:27,27:0,0 49:0:0:0:2,2:0,0:47,47:0,0 chr3 24973 . A C,G . QSS_ref NT=het;QSS=50;QSS_NT=28;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:25,25:0,0:3,3:0,0 47:0:0:0:44,44:3,3:0,0:0,0 chr3 25015 . T C . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:0,0:23,23 43:0:0:0:0,0:4,4:0,0:39,39 chr3 25041 . A C . QSS_ref NT=het;QSS=2;QSS_NT=2;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:24,24:5,5:0,0:0,0 48:0:0:0:47,47:0,0:1,1:0,0 chr3 25116 . T A,C . QSS_ref NT=het;QSS=84;QSS_NT=29;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:5:0:0:0,0:6,6:0,0:30,30 59:9:0:0:4,4:0,0:0,0:46,46 chr3 25187 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:6:0:0:0,0:0,0:21,21:4,4 49:14:0:0:2,2:0,0:33,33:0,0 chr3 25324 . G A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:20,20:3,3 46:0:0:0:3,3:0,0:43,43:0,0 chr3 25366 . A C,G . QSS_ref NT=het;QSS=7;QSS_NT=7;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:24,24:0,0:2,2:0,0 57:0:0:0:53,53:4,4:0,0:0,0 chr3 25400 . C G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:29,29:0,0:0,0 60:0:0:0:0,0:56,56:4,4:0,0 chr3 25431 . G A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:1:0:0:2,2:0,0:24,24:0,0 48:1:0:0:0,0:2,2:45,45:0,0 chr3 25467 . G C,T . QSS_ref NT=het;QSS=118;QSS_NT=49;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:3:0:0:0,0:4,4:21,21:0,0 50:9:0:0:0,0:0,0:36,36:5,5 chr3 25498 . G . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=GG->GG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:6:0:0:0,0:0,0:18,18:0,0 54:15:0:0:0,0:2,2:37,39:0,0 chr3 25592 . G C . QSS_ref NT=ref;QSS=6;QSS_NT=6;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:10:0:0:0,0:0,0:27,27:0,0 43:13:0:0:0,0:8,8:22,22:0,0 chr3 25675 . T C,G . QSS_ref NT=het;QSS=208;QSS_NT=42;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:6,6:0,0:29,29 53:0:0:0:0,0:0,0:8,8:45,45 chr3 25718 . C A . QSS_ref NT=ref;QSS=4;QSS_NT=3;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:31,31:0,0:2,2 52:0:0:0:3,3:49,49:0,0:0,0 chr3 25751 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:0,0:34,34 43:0:0:0:0,0:2,2:0,0:41,41 chr3 25802 . G C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:30,30:0,0 55:0:0:0:0,0:4,4:51,51:0,0 chr3 25857 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:9,9:25,25 53:0:0:0:0,0:0,0:0,0:53,53 chr3 25870 . T A . PASS NT=ref;QSS=28;QSS_NT=28;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:0,0:35,35 57:0:0:0:10,10:0,0:0,0:47,47 chr3 25967 . C T . QSS_ref NT=ref;QSS=2;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:20,20:1,1:0,0 49:0:0:0:0,0:48,48:0,0:1,1 chr3 25970 . T A,G . QSS_ref NT=het;QSS=118;QSS_NT=51;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:0,0:4,4:17,17 49:0:0:0:5,5:0,0:0,0:44,44 chr3 26033 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:3,3:29,29:0,0 60:0:0:0:0,0:6,6:54,54:0,0 chr3 26106 . G A,T . QSS_ref NT=het;QSS=121;QSS_NT=71;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:16,16:0,0:15,15:0,0 53:0:0:0:0,0:0,0:51,51:2,2 chr3 26121 . G C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:31,31:0,0 55:0:0:0:0,0:4,4:51,51:0,0 chr3 26181 . T C . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:0,0:29,29 55:0:0:0:0,0:3,3:0,0:52,52 chr3 26207 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:1,1:0,0:31,31:0,0 61:0:0:0:0,0:0,0:61,61:0,0 chr3 26226 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:24,24:4,4:0,0:0,0 60:0:0:0:60,60:0,0:0,0:0,0 chr3 26277 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:31,31:0,0:1,1 57:0:0:0:0,0:57,57:0,0:0,0 chr3 26281 . T G . QSS_ref NT=het;QSS=14;QSS_NT=14;SGT=GT->TT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:9,9:21,21 59:0:0:0:0,0:0,0:0,0:59,59 chr3 26401 . C T . QSS_ref NT=het;QSS=2;QSS_NT=2;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:23,23:0,0:13,13 83:0:0:0:0,0:83,107:0,0:0,0 chr3 26708 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:2,2:22,22 139:0:0:0:0,0:0,0:0,0:139,144 chr3 26763 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:4,4:28,28:0,0 139:0:0:0:0,0:0,0:139,140:0,0 chr3 26901 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:1,1:28,28:0,0:0,0 128:0:0:0:0,0:128,128:0,0:0,0 chr3 26937 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:2,2:0,0:0,0:32,32 151:0:0:0:0,0:0,0:0,0:151,151 chr3 27212 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:38,38:0,0:1,1:0,0 144:0:0:0:144,144:0,0:0,0:0,0 chr3 27228 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:36,36:0,0:0,0:1,1 136:0:0:0:136,136:0,0:0,0:0,0 chr3 27348 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:28,28:0,0:0,0:8,8 178:0:0:0:178,178:0,0:0,0:0,0 chr3 27422 . A C . QSS_ref NT=het;QSS=18;QSS_NT=18;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:19,19:14,14:0,0:0,0 143:0:0:0:143,143:0,0:0,0:0,0 chr3 27576 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:9,9:0,0:33,33:0,0 154:0:0:0:0,0:0,0:154,154:0,0 chr3 27789 . G T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:27,27:1,1 155:0:0:0:0,0:0,0:155,155:0,0 chr3 27798 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:25,25:5,5:0,0:0,0 149:0:0:0:149,149:0,0:0,0:0,0 chr3 27845 . A G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:32,32:0,0:1,1:0,0 156:0:0:0:156,156:0,0:0,0:0,0 chr3 28031 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:1,1:0,0:30,30:0,0 144:0:0:0:0,0:0,0:144,144:0,0 chr3 28047 . C T . QSS_ref NT=het;QSS=33;QSS_NT=33;SGT=CT->CC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:23,23:0,0:8,8 143:0:0:0:0,0:143,143:0,0:0,0 chr3 28099 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:3,3:0,0:0,0:32,32 141:0:0:0:0,0:0,0:0,0:141,141 chr3 28120 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:30,30:0,0:6,6:0,0 152:0:0:0:152,152:0,0:0,0:0,0 chr3 28182 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:2,2:19,19:0,0:0,0 139:0:0:0:0,0:139,140:0,0:0,0 chr3 28211 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:7,7:0,0:15,15:0,0 147:0:0:0:0,0:0,0:147,148:0,0 chr3 28307 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:4,4:27,27:0,0:0,0 122:0:0:0:0,0:122,141:0,0:0,0 chr3 28376 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:33,33:2,2:0,0:0,0 120:0:0:0:120,148:0,0:0,0:0,0 chr3 28379 . A G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:30,30:0,0:1,1:0,0 114:0:0:0:114,142:0,0:0,0:0,0 chr3 28384 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:5,5:0,0:23,23 112:0:0:0:0,0:0,0:0,0:112,144 chr3 28529 . C G . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:28,28:0,0:0,0 64:0:0:0:0,0:62,62:2,3:0,0 chr3 28638 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:27,27:0,0:0,0:7,7 47:0:0:0:47,47:0,0:0,0:0,0 chr3 28874 . C A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:2,2:21,21:0,0:0,0 68:0:0:0:0,0:68,68:0,0:0,0 chr3 28893 . G A . QSS_ref NT=het;QSS=3;QSS_NT=3;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:9,9:0,0:12,12:0,0 72:0:0:0:1,1:0,0:71,71:0,0 chr3 28996 . A C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:40,40:1,1:0,0:0,0 63:0:0:0:63,63:0,0:0,0:0,0 chr3 29008 . C A . QSS_ref NT=het;QSS=3;QSS_NT=3;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:12,12:24,24:0,0:0,0 63:0:0:0:0,0:63,63:0,0:0,0 chr3 29218 . G C . PASS NT=ref;QSS=39;QSS_NT=39;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:1:0:0:0,0:0,0:33,33:0,0 66:2:0:0:0,0:21,21:43,43:0,0 chr3 29305 . T G . PASS NT=ref;QSS=23;QSS_NT=23;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:0,0:0,0:22,22 56:0:0:0:0,0:0,0:11,11:45,45 chr3 29345 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:24,24:0,0 62:0:0:0:0,0:2,2:60,60:0,0 chr3 29370 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:25,25:0,0 60:0:0:0:23,23:0,0:37,37:0,0 chr3 29466 . T G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:0,0:26,26 50:0:0:0:0,0:0,0:6,6:44,44 chr3 29493 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:33,33:0,0 50:0:0:0:0,0:0,0:48,48:2,2 chr3 29525 . T G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:0,0:28,28 55:0:0:0:0,0:0,0:4,4:51,51 chr3 29550 . A G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:28,28:0,0:0,0:0,0 48:0:0:0:42,42:0,0:6,6:0,0 chr3 29580 . C T . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:26,26:1,1:0,0 51:0:0:0:0,0:44,44:0,0:7,7 chr3 29644 . A C,G . QSS_ref NT=het;QSS=122;QSS_NT=29;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:33,33:5,5:0,0:0,0 59:0:0:0:43,43:0,0:16,16:0,0 chr3 29747 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:0,0:35,35 48:0:0:0:3,3:0,0:0,0:45,45 chr3 29807 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:22,22:0,0:1,1:0,0 53:0:0:0:41,41:0,0:12,12:0,0 chr3 29863 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:0,0:25,25 41:0:0:0:0,0:3,3:0,0:38,38 chr3 29885 . A C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:26,26:0,0:0,0:0,0 35:0:0:0:32,32:3,3:0,0:0,0 chr3 29912 . C G,T . QSS_ref NT=het;QSS=60;QSS_NT=43;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:22,22:0,0:3,3 37:0:0:0:0,0:34,34:3,3:0,0 chr3 29959 . T G . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:4:0:0:1,1:0,0:0,0:25,25 63:7:0:0:0,0:0,0:4,4:52,52 chr3 30155 . A C . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:41,41:0,0:0,0:0,0 45:0:0:0:37,37:8,8:0,0:0,0 chr3 30236 . T A . QSS_ref NT=ref;QSS=7;QSS_NT=7;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 43:0:0:0:0,0:0,0:0,0:43,43 42:0:0:0:7,7:0,0:0,0:35,35 chr3 30293 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:0,0:6,6:34,34:0,0 59:0:0:0:0,0:1,1:58,58:0,0 chr3 30388 . T A,C . QSS_ref NT=het;QSS=93;QSS_NT=56;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:3,3:0,0:18,18 55:0:0:0:8,8:0,0:0,0:47,47 chr3 30419 . C T . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:24,24:2,2:0,0 47:0:0:0:0,0:39,39:0,0:8,8 chr3 30469 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:38,38:0,0:0,0:1,1 50:0:0:0:49,49:1,1:0,0:0,0 chr3 30486 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:2,2:36,36:0,0:0,0 46:0:0:0:3,3:43,43:0,0:0,0 chr3 30504 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:2,2:34,34:0,0:0,0 48:0:0:0:0,0:46,46:0,0:2,2 chr3 30615 . G A,C . QSS_ref NT=het;QSS=152;QSS_NT=39;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:5,5:0,0:25,25:0,0 43:0:0:0:0,0:5,5:38,38:0,0 chr3 30644 . G A,C . QSS_ref NT=het;QSS=19;QSS_NT=18;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:3,3:0,0:28,28:0,0 50:0:0:0:0,0:2,2:48,48:0,0 chr3 30686 . T A,G . QSS_ref NT=het;QSS=66;QSS_NT=48;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:8,8:0,0:0,0:26,26 48:0:0:0:0,0:0,0:3,3:45,45 chr3 30739 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:0,0:37,37 47:0:0:0:0,0:0,0:8,8:39,39 chr3 30826 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:33,33:0,0 55:0:0:0:0,0:0,0:53,53:2,2 chr3 30838 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:32,32:0,0:1,1 52:0:0:0:0,0:51,51:0,0:1,1 chr3 30952 . C A . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:32,32:0,0:0,0 48:0:0:0:5,5:43,43:0,0:0,0 chr3 30979 . C A,G . QSS_ref NT=het;QSS=3;QSS_NT=2;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:2,2:36,36:0,0:0,0 47:0:0:0:0,0:45,45:2,2:0,0 chr3 31022 . C G,T . QSS_ref NT=het;QSS=72;QSS_NT=53;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:25,25:0,0:9,9 51:0:0:0:0,0:48,48:3,3:0,0 chr3 31029 . A G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:35,35:0,0:0,0:0,0 49:0:0:0:41,41:0,0:8,8:0,0 chr3 31149 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:25,25:0,0:2,2 51:0:0:0:8,8:43,43:0,0:0,0 chr3 31209 . C G . PASS NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:1,1:30,30:0,0:0,0 53:0:0:0:0,0:51,51:2,2:0,0 chr3 31251 . G C,T . QSS_ref NT=het;QSS=333;QSS_NT=61;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:10,10:21,21:0,0 50:0:0:0:0,0:0,0:42,42:8,8 chr3 31311 . G T . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:31,31:0,0 43:0:0:0:0,0:0,0:42,42:1,1 chr3 31332 . C G,T . QSS_ref NT=het;QSS=4;QSS_NT=4;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:28,28:3,3:0,0 43:0:0:0:0,0:41,41:0,0:2,2 chr3 31344 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:32,32:0,0:0,0 42:0:0:0:0,0:41,41:0,0:1,1 chr3 31447 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:15,15:15,15 51:0:0:0:5,5:0,0:0,0:46,46 chr3 31486 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:35,35:0,0:0,0:0,0 60:0:0:0:45,45:15,15:0,0:0,0 chr3 31578 . T A,C . QSS_ref NT=het;QSS=19;QSS_NT=19;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:10,10:0,0:24,24 52:0:0:0:2,2:0,0:0,0:50,50 chr3 31585 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:0,0:34,34 51:0:0:0:0,0:6,6:0,0:45,45 chr3 31691 . C G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:19,19:0,0:14,14 51:0:0:0:0,0:42,42:9,9:0,0 chr3 31774 . C G . PASS NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:25,25:0,0:0,0 60:0:0:0:0,0:54,54:6,6:0,0 chr3 31815 . A T . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:25,25:0,0:0,0:0,0 49:0:0:0:43,43:0,0:0,0:6,6 chr3 31824 . A C . QSS_ref NT=ref;QSS=10;QSS_NT=10;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:26,26:0,0:0,0:0,0 42:0:0:0:40,40:2,2:0,0:0,0 chr3 31833 . G A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:3,3:0,0:29,29:0,0 48:0:0:0:0,0:4,4:44,44:0,0 chr3 31851 . C G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:29,29:0,0:4,4 47:0:0:0:0,0:36,36:11,11:0,0 chr3 31897 . G C,T . QSS_ref NT=het;QSS=311;QSS_NT=53;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:25,25:10,10 46:0:0:0:0,0:15,15:31,31:0,0 chr3 31955 . G C . PASS NT=ref;QSS=37;QSS_NT=37;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:33,33:0,0 54:0:0:0:0,0:12,12:42,42:0,0 chr3 32056 . T A,G . QSS_ref NT=het;QSS=261;QSS_NT=67;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:7:0:0:7,7:0,0:0,0:12,12 53:8:0:0:0,0:0,0:9,9:36,39 chr3 32157 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:2:0:0:0,0:33,33:0,0:0,0 51:4:0:0:0,0:46,46:1,1:0,0 chr3 32293 . C A,T . QSS_ref NT=het;QSS=6;QSS_NT=6;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:21,21:0,0:2,2 47:0:0:0:4,4:43,43:0,0:0,0 chr3 32319 . A G . QSS_ref NT=het;QSS=19;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:23,23:0,0:0,0:2,2 53:0:0:0:48,48:0,0:5,5:0,0 chr3 32389 . C G,T . QSS_ref NT=het;QSS=52;QSS_NT=6;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:0,0:39,39:0,0:3,3 56:0:0:0:0,0:52,52:4,4:0,0 chr3 32618 . C T . BCNoise;QSS_ref NT=ref;QSS=13;QSS_NT=13;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:14:0:0:0,0:18,25:0,0:0,0 50:20:0:0:0,0:27,31:0,0:3,3 chr3 32640 . C A,G . QSS_ref;BCNoise NT=het;QSS=3070;QSS_NT=3070;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:16:0:0:0,0:20,21:6,6:0,0 48:26:0:0:4,5:18,19:0,0:0,0 chr3 32818 . G A . QSS_ref NT=ref;QSS=6;QSS_NT=6;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:1,1:32,32:0,0 34:0:0:0:1,1:0,0:33,33:0,0 chr3 32875 . G A,C . QSS_ref NT=het;QSS=83;QSS_NT=19;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:0,0:4,4:35,35:0,0 53:0:0:0:5,5:0,0:48,48:0,0 chr3 32920 . C T . QSS_ref NT=ref;QSS=8;QSS_NT=8;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:38,38:0,0:0,0 68:0:0:0:0,0:64,64:0,0:4,4 chr3 32961 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:29,29:0,0:0,0:0,0 54:0:0:0:51,51:0,0:0,0:3,3 chr3 33014 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:31,31:0,0:1,1 50:0:0:0:0,0:50,50:0,0:0,0 chr3 33046 . G C . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:32,32:0,0 41:0:0:0:0,0:3,3:38,38:0,0 chr3 33068 . C G,T . QSS_ref NT=het;QSS=152;QSS_NT=58;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:25,25:11,11:0,0 39:0:0:0:0,0:35,35:0,0:4,4 chr3 33159 . A . . QSS_ref;BCNoise NT=ref;QSS=3;QSS_NT=3;SGT=AA->AA;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:13:0:0:25,30:0,0:0,0:0,0 48:28:0:0:18,27:0,0:2,3:0,0 chr3 33184 . A C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:8:0:0:28,28:6,7:0,0:0,0 51:12:0:0:38,39:0,0:0,0:1,1 chr3 33299 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:0,0:29,29 62:0:0:0:0,0:0,0:7,7:55,55 chr3 33319 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:28,28:0,0 57:0:0:0:0,0:3,3:54,54:0,0 chr3 33335 . C G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:1,1:29,29:0,0:0,0 48:0:0:0:0,0:46,46:2,2:0,0 chr3 33343 . G A . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:1,1:31,31:0,0 45:0:0:0:1,1:0,0:44,44:0,0 chr3 33428 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:1,1:0,0:0,0:35,35 44:0:0:0:0,0:0,0:0,0:44,44 chr3 33437 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:37,37:0,0:0,0 44:0:0:0:0,0:43,43:1,1:0,0 chr3 33453 . A C,T . QSS_ref NT=het;QSS=297;QSS_NT=41;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:30,30:8,8:0,0:0,0 47:0:0:0:37,37:0,0:0,0:10,10 chr3 33550 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:3,3:0,0:24,24 64:0:0:0:8,8:0,0:0,0:56,56 chr3 33591 . G A,C . QSS_ref NT=het;QSS=231;QSS_NT=54;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:7,7:21,21:0,0 61:0:0:0:8,8:0,0:53,53:0,0 chr3 33680 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:7,7:0,0:0,0:32,32 54:0:0:0:0,0:4,4:0,0:50,50 chr3 33728 . A C,T . QSS_ref NT=het;QSS=88;QSS_NT=37;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:27,27:0,0:0,0:4,4 41:0:0:0:36,36:5,5:0,0:0,0 chr3 33809 . C G,T . QSS_ref;BCNoise NT=het;QSS=104;QSS_NT=55;SGT=CT->CG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:6:0:0:0,0:14,15:0,0:4,4 42:18:0:0:0,0:20,21:4,4:0,0 chr3 33835 . T G . BCNoise NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:6:0:0:0,0:0,0:0,0:20,21 46:27:0:0:0,0:0,0:1,1:18,20 chr3 33869 . C A . QSS_ref NT=ref;QSS=13;QSS_NT=11;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:1:0:0:0,0:22,22:0,0:1,1 46:3:0:0:3,3:40,40:0,0:0,0 chr3 33889 . T . . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=TT->TT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:1:0:0:0,0:2,2:0,0:24,25 52:2:0:0:0,0:0,0:2,2:48,48 chr3 33907 . G A,T . QSS_ref NT=het;QSS=134;QSS_NT=45;SGT=AG->GT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:5,5:0,0:19,22:0,0 46:1:0:0:0,0:0,0:35,35:10,10 chr3 34220 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:21,21:5,5:0,0 49:0:0:0:0,0:44,44:5,5:0,0 chr3 34256 . A C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:28,28:0,0:0,0:0,0 53:0:0:0:49,49:4,4:0,0:0,0 chr3 34286 . C G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:23,23:0,0:0,0 54:0:0:0:0,0:52,52:2,2:0,0 chr3 34402 . G A,T . QSS_ref NT=het;QSS=39;QSS_NT=21;SGT=AG->GT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:3,3:0,0:24,28:0,0 46:0:0:0:0,0:0,0:42,42:4,4 chr3 34423 . G A,C . QSS_ref NT=het;QSS=30;QSS_NT=30;SGT=CG->AG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:0,0:3,3:17,23:0,0 52:2:0:0:2,2:0,0:48,48:0,0 chr3 34575 . G C,T . QSS_ref NT=het;QSS=69;QSS_NT=43;SGT=GT->CG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:1:0:0:0,0:0,0:21,22:3,3 47:4:0:0:0,0:8,8:35,35:0,0 chr3 34692 . A G,T . QSS_ref NT=het;QSS=151;QSS_NT=53;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:5:0:0:17,17:0,0:6,6:0,0 35:8:0:0:22,22:0,0:0,0:5,7 chr3 34746 . C . . BCNoise;QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CC->CC;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:11:0:0:0,0:20,25:0,0:0,0 43:18:0:0:0,0:23,29:2,2:0,0 chr3 34800 . C A . PASS NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:1:0:0:0,0:28,28:0,0:1,1 50:4:0:0:2,2:44,44:0,0:0,0 chr3 34815 . C A,G . QSS_ref NT=het;QSS=5;QSS_NT=5;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:2,2:31,31:0,0:0,0 47:3:0:0:0,0:41,41:3,3:0,0 chr3 34863 . C G,T . QSS_ref NT=het;QSS=478;QSS_NT=66;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:0,0:25,25:16,16:0,0 37:0:0:0:0,0:25,25:0,0:12,12 chr3 35112 . G A . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:34,34:0,0 46:0:0:0:3,3:0,0:43,43:0,0 chr3 35157 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:1,1:30,30 47:0:0:0:0,0:0,0:0,0:47,47 chr3 35178 . G A . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:1,1:31,31:0,0 40:0:0:0:2,2:0,0:38,38:0,0 chr3 35192 . C A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:5,5:25,25:0,0:0,0 39:0:0:0:0,0:37,37:2,2:0,0 chr3 35227 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:28,28:0,0 38:0:0:0:2,2:0,0:36,36:0,0 chr3 35397 . C A,G . QSS_ref NT=het;QSS=185;QSS_NT=33;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:6,6:30,30:0,0:0,0 42:0:0:0:0,0:36,36:6,6:0,0 chr3 35458 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:25,25:0,0:2,2:0,0 42:0:0:0:38,38:4,4:0,0:0,0 chr3 35500 . T G . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:0,0:29,29 44:0:0:0:0,0:0,0:1,1:43,43 chr3 35527 . C G . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:24,24:0,0:0,0 43:0:0:0:0,0:37,37:6,6:0,0 chr3 35557 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:1,1:31,31:0,0 53:0:0:0:1,1:0,0:52,52:0,0 chr3 35587 . G A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:5,5:0,0:26,26:0,0 56:0:0:0:0,0:8,8:48,48:0,0 chr3 35692 . G A . QSS_ref NT=ref;QSS=13;QSS_NT=13;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:23,23:0,0 53:0:0:0:4,4:0,0:49,49:0,0 chr3 35730 . A C,G . QSS_ref NT=het;QSS=56;QSS_NT=31;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:24,24:0,0:3,3:0,0 43:0:0:0:37,37:6,6:0,0:0,0 chr3 35796 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:0,0:29,29 36:0:0:0:0,0:0,0:2,2:34,34 chr3 35810 . G C . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:27,27:1,1 37:0:0:0:0,0:2,2:35,35:0,0 chr3 35838 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:31,31:4,4:0,0:0,0 40:0:0:0:38,38:0,0:2,2:0,0 chr3 35914 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:0,0:5,5:37,37:0,0 62:0:0:0:0,0:1,1:61,61:0,0 chr3 35928 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:0,0:0,0:0,0:42,42 61:0:0:0:0,0:0,0:5,5:56,56 chr3 35997 . C A . QSS_ref NT=het;QSS=9;QSS_NT=9;SGT=AC->CC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:4:0:0:8,8:25,25:0,0:0,0 56:8:0:0:0,0:48,48:0,0:0,0 chr3 36001 . A T . PASS NT=ref;QSS=36;QSS_NT=36;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:4:0:0:31,31:0,0:0,0:0,0 56:9:0:0:36,36:0,0:0,0:11,11 chr3 36088 . C T . BCNoise;QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:19:0:0:0,0:18,19:0,0:0,0 55:23:0:0:0,0:31,33:0,0:1,1 chr3 36135 . G A,C . QSS_ref NT=het;QSS=4;QSS_NT=4;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:7:0:0:2,2:0,0:20,20:0,0 57:9:0:0:0,0:4,4:44,44:0,0 chr3 36176 . C G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:1,1:25,25:0,0:0,0 62:0:0:0:0,0:59,59:3,3:0,0 chr3 36247 . C G,T . QSS_ref NT=het;QSS=244;QSS_NT=57;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:19,19:0,0:7,7 46:0:0:0:0,0:31,31:15,15:0,0 chr3 36348 . C G . QSS_ref NT=ref;QSS=6;QSS_NT=6;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:26,26:0,0:1,1 39:0:0:0:0,0:38,38:1,1:0,0 chr3 36418 . C T . QSS_ref NT=ref;QSS=7;QSS_NT=7;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:31,31:1,1:0,0 54:0:0:0:0,0:52,52:0,0:2,2 chr3 36492 . C A . QSS_ref NT=ref;QSS=13;QSS_NT=13;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:37,37:0,0:0,0 42:0:0:0:7,7:35,36:0,0:0,0 chr3 36540 . G A,T . QSS_ref NT=het;QSS=122;QSS_NT=41;SGT=AG->GT;SOMATIC;TQSS=2;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 45:0:0:0:9,9:0,0:36,36:0,0 22:0:0:0:0,0:0,0:18,21:4,4 chr3 38309 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:22,22:3,3:0,0:0,0 55:0:0:0:55,55:0,0:0,0:0,0 chr3 38601 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:4,4:24,24:0,0 179:0:0:0:0,0:0,0:179,273:0,0 chr3 38667 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:9,9:26,26 197:0:0:0:0,0:0,0:0,0:197,280 chr3 38778 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:4,4:0,0:18,18:0,0 250:0:0:0:0,0:0,0:250,281:0,0 chr3 38856 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:20,20:9,9:0,0 287:0:0:0:0,0:287,292:0,0:0,0 chr3 38944 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:30,30:0,0:4,4 295:0:0:0:0,0:295,296:0,0:0,0 chr3 38988 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:28,28:3,3:0,0 305:0:0:0:0,0:305,308:0,0:0,0 chr3 39034 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:20,20:4,4:0,0:0,0 325:0:0:0:325,329:0,0:0,0:0,0 chr3 39129 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:3,3:0,0:32,32:0,0 276:0:0:0:0,0:0,0:276,282:0,0 chr3 39166 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:20,20:0,0:0,0:10,10 293:0:0:0:293,297:0,0:0,0:0,0 chr3 39317 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:24,24:0,0:4,4:0,0 285:0:0:0:285,290:0,0:0,0:0,0 chr3 39384 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:2,2:23,23:0,0:0,0 291:0:0:0:0,0:291,295:0,0:0,0 chr3 39396 . T A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:1,1:0,0:0,0:30,30 295:0:0:0:0,0:0,0:0,0:295,299 chr3 39457 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:35,35:0,0:0,0:2,2 276:0:0:0:276,283:0,0:0,0:0,0 chr3 39488 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:0,0:0,0:39,39:1,1 259:0:0:0:0,0:0,0:259,266:0,0 chr3 39517 . G C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:2,2:31,31:0,0 266:0:0:0:0,0:0,0:266,273:0,0 chr3 39638 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 44:0:0:0:0,0:6,6:38,38:0,0 283:0:0:0:0,0:0,0:283,287:0,0 chr3 39684 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:7,7:0,0:23,23 316:0:0:0:0,0:0,0:0,0:316,319 chr3 39738 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:5,5:0,0:0,0:29,29 322:0:0:0:0,0:0,0:0,0:322,323 chr3 39802 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:4,4:26,26:0,0:0,0 309:0:0:0:0,0:309,312:0,0:0,0 chr3 39873 . T A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:1,1:0,0:0,0:28,28 328:0:0:0:0,0:0,0:0,0:328,332 chr3 39947 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:12,12:24,28:0,0:0,0 324:0:0:0:0,0:324,328:0,0:0,0 chr3 40045 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 18:0:0:0:15,22:3,3:0,0:0,0 330:0:0:0:330,335:0,0:0,0:0,0 chr3 40121 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:0,0:2,2:0,0:37,38 327:0:0:0:0,0:0,0:0,0:327,330 chr3 40141 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 44:0:0:0:43,43:0,0:0,0:1,1 325:0:0:0:325,329:0,0:0,0:0,0 chr3 40151 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:0,0:9,9:0,0:32,32 337:0:0:0:0,0:0,0:0,0:337,343 chr3 40237 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:2,2:0,0:0,0:34,34 310:0:0:0:0,0:0,0:0,0:310,316 chr3 40252 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:27,27:2,2:0,0:0,0 309:0:0:0:309,314:0,0:0,0:0,0 chr3 40287 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:9,9:0,0:0,0:20,20 312:0:0:0:0,0:0,0:0,0:312,319 chr3 40367 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:5,5:0,0:26,26 314:0:0:0:0,0:0,0:0,0:314,317 chr3 40410 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:2,2:0,0:31,31 317:0:0:0:0,0:0,0:0,0:317,320 chr3 40422 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:15,15:14,16 324:0:0:0:0,0:0,0:0,0:324,327 chr3 40614 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:3,3:0,0:32,34:0,0 342:0:0:0:0,0:0,0:342,345:0,0 chr3 40644 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:0,0:0,0:10,10:32,32 318:0:0:0:0,0:0,0:0,0:318,320 chr3 40734 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:2,2:0,0:0,0:30,30 315:0:0:0:0,0:0,0:0,0:315,319 chr3 40767 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:33,33:1,1 308:0:0:0:0,0:0,0:308,314:0,0 chr3 40780 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:8,8:0,0:0,0:27,27 311:0:0:0:0,0:0,0:0,0:311,317 chr3 40989 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 19:0:0:0:3,3:0,0:0,0:16,19 305:0:0:0:0,0:0,0:0,0:305,310 chr3 41135 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:4,4:0,0:17,25 298:0:0:0:0,0:0,0:0,0:298,303 chr3 41174 . A G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:21,31:0,0:1,1:0,0 298:0:0:0:298,304:0,0:0,0:0,0 chr3 41179 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:1,1:0,0:20,31 306:0:0:0:0,0:0,0:0,0:306,312 chr3 41187 . A C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:16,27:0,0:0,0:9,9 301:0:0:0:301,307:0,0:0,0:0,0 chr3 41261 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:2,2:30,34 298:0:0:0:0,0:0,0:0,0:298,299 chr3 41284 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:32,33:0,0:0,0:2,2 295:0:0:0:295,297:0,0:0,0:0,0 chr3 41312 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:36,36:0,0:1,1:0,0 321:0:0:0:321,324:0,0:0,0:0,0 chr3 41334 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:4,4:31,31:0,0 298:0:0:0:0,0:0,0:298,302:0,0 chr3 41364 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:31,31:0,0:6,6:0,0 306:0:0:0:306,310:0,0:0,0:0,0 chr3 41407 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:3,3:36,36:0,0:0,0 300:0:0:0:0,0:300,304:0,0:0,0 chr3 41428 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:0,0:40,40:0,0:1,1 305:0:0:0:0,0:305,307:0,0:0,0 chr3 41435 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:30,30:9,9:0,0:0,0 311:0:0:0:311,313:0,0:0,0:0,0 chr3 41543 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:1,1:23,24:0,0:0,0 314:0:0:0:0,0:314,316:0,0:0,0 chr3 41581 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 18:0:0:0:15,19:3,3:0,0:0,0 316:0:0:0:316,320:0,0:0,0:0,0 chr3 41783 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:23,23:0,0:0,0:1,1 342:0:0:0:342,348:0,0:0,0:0,0 chr3 41801 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:6,6:0,0:20,20:0,0 340:0:0:0:0,0:0,0:340,347:0,0 chr3 41840 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:1,1:24,24:0,0 349:0:0:0:0,0:0,0:349,359:0,0 chr3 41883 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:4,4:30,30:0,0 368:0:0:0:0,0:0,0:368,376:0,0 chr3 41939 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:8,8:0,0:0,0:25,25 359:0:0:0:0,0:0,0:0,0:359,363 chr3 42016 . G T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:22,22:1,1 342:0:0:0:0,0:0,0:342,346:0,0 chr3 42027 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:7,7:0,0:0,0:21,21 333:0:0:0:0,0:0,0:0,0:333,339 chr3 42141 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:8,8:0,0:20,20 310:0:0:0:0,0:0,0:0,0:310,341 chr3 42185 . C A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:1,1:23,23:0,0:0,0 285:0:0:0:0,0:285,352:0,0:0,0 chr3 42214 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:0,0:3,3:18,18 275:0:0:0:0,0:0,0:0,0:275,368 chr3 42302 . C G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:27,27:1,1:0,0 236:0:0:0:0,0:236,338:0,0:0,0 chr3 42327 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:3,3:0,0:0,0:24,24 228:0:0:0:0,0:0,0:0,0:228,355 chr3 42383 . G T . PASS NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:32,32:0,0 85:0:0:0:0,0:0,0:82,99:3,4 chr3 42393 . C G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:31,31:1,1:0,0 83:0:0:0:0,0:83,104:0,0:0,0 chr3 42528 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:25,25:1,1 67:0:0:0:0,0:0,0:67,88:0,0 chr3 42531 . T A . QSS_ref NT=het;QSS=35;QSS_NT=35;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:14,14:0,0:0,0:11,11 66:0:0:0:0,0:0,0:0,0:66,86 chr3 42706 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:17,22:7,7:0,0 70:0:0:0:0,0:70,94:0,0:0,0 chr3 43159 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:20,20:3,3:0,0 19:0:0:0:0,0:19,19:0,0:0,0 chr3 43248 . A T . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 8:0:0:0:8,17:0,0:0,0:0,0 49:0:0:0:48,48:0,0:0,0:1,1 chr3 43252 . T G . QSS_ref NT=conflict;QSS=3070;QSS_NT=0;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 8:0:0:0:0,0:0,0:0,0:8,18 49:0:0:0:0,0:0,0:1,1:48,48 chr3 43274 . G T . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 9:0:0:0:0,0:0,0:9,20:0,0 50:0:0:0:0,0:0,0:49,49:1,1 chr3 43405 . A C,T . QSS_ref NT=het;QSS=31;QSS_NT=31;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:4:0:0:21,21:3,3:0,0:0,0 51:13:0:0:36,36:0,0:0,0:2,2 chr3 43562 . A G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:28,28:0,0:0,0:3,3 50:0:0:0:46,46:0,0:4,4:0,0 chr3 43659 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:0,0:29,29 67:0:0:0:0,0:0,0:3,3:64,64 chr3 43688 . C T . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:25,25:0,0:0,0 71:0:0:0:0,0:69,69:0,0:2,2 chr3 43730 . T C . PASS NT=ref;QSS=15;QSS_NT=15;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:0,0:26,27 61:0:0:0:0,0:4,4:0,0:57,57 chr3 43744 . C G . QSS_ref NT=ref;QSS=13;QSS_NT=13;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:23,26:0,0:0,0 63:0:0:0:0,0:60,60:3,3:0,0 chr3 43754 . C A,G . QSS_ref NT=het;QSS=10;QSS_NT=10;SGT=AC->CG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:2,2:19,22:0,0:0,0 61:0:0:0:0,0:55,55:6,6:0,0 chr3 43797 . G C . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 17:0:0:0:0,0:0,0:17,21:0,0 45:0:0:0:0,0:3,3:42,42:0,0 chr3 43809 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 16:0:0:0:0,0:15,19:0,0:1,1 46:0:0:0:0,0:44,44:0,0:2,2 chr3 43824 . A T . QSS_ref NT=conflict;QSS=1;QSS_NT=0;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 14:0:0:0:14,16:0,2:0,0:0,0 45:0:0:0:39,39:0,0:0,0:6,6 chr3 43869 . T C,G . QSS_ref NT=het;QSS=105;QSS_NT=53;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:1:0:0:0,0:0,0:4,4:19,19 44:7:0:0:0,0:7,7:0,0:30,30 chr3 43921 . C G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:5:0:0:0,0:26,26:0,0:0,0 57:21:0:0:0,0:33,34:3,3:0,0 chr3 43944 . A C . QSS_ref;BCNoise NT=ref;QSS=2;QSS_NT=2;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:18:0:0:16,17:0,0:0,0:0,0 67:32:0:0:34,34:1,1:0,0:0,0 chr3 43970 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:7:0:0:0,0:1,1:24,24:0,0 66:11:0:0:1,1:0,0:54,54:0,0 chr3 43975 . G C,T . QSS_ref NT=het;QSS=31;QSS_NT=30;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:7:0:0:0,0:2,2:20,20:0,0 68:10:0:0:0,0:0,0:53,53:5,5 chr3 43996 . C A . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:3:0:0:0,0:19,19:1,1:0,0 68:7:0:0:3,3:58,58:0,0:0,0 chr3 44026 . T G . PASS NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:1:0:0:0,0:0,0:0,0:29,29 61:4:0:0:0,0:0,0:2,2:55,55 chr3 44046 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:0,0:25,25 55:0:0:0:0,0:1,1:0,0:54,54 chr3 44062 . C A . QSS_ref NT=het;QSS=27;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:25,25:2,2:0,0 49:0:0:0:9,9:40,40:0,0:0,0 chr3 44097 . T G . QSS_ref NT=ref;QSS=6;QSS_NT=6;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:1,1:0,0:30,30 37:0:0:0:0,0:0,0:1,1:36,36 chr3 44106 . G . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=GG->GG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:1,1:0,0:27,27:0,0 36:0:0:0:0,0:2,2:34,34:0,0 chr3 44127 . T A,C . QSS_ref NT=het;QSS=109;QSS_NT=45;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:5,5:0,0:0,0:22,22 37:0:0:0:0,0:4,4:0,0:33,33 chr3 44152 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:35,35:0,0:0,0:0,0 34:0:0:0:31,31:3,3:0,0:0,0 chr3 44212 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:35,35:6,6:0,0:0,0 55:0:0:0:51,51:0,0:4,4:0,0 chr3 44241 . T C,G . QSS_ref NT=het;QSS=164;QSS_NT=43;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:1:0:0:0,0:0,0:6,6:28,28 53:2:0:0:0,0:10,10:0,0:41,41 chr3 44327 . A G . QSS_ref;BCNoise NT=ref;QSS=3;QSS_NT=3;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:11:0:0:15,16:0,0:0,0:0,0 59:22:0:0:36,45:0,0:1,2:0,0 chr3 44339 . G A . QSS_ref NT=het;QSS=11;QSS_NT=3;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:8:0:0:0,0:1,2:16,16:0,0 56:14:0:0:4,5:0,0:38,40:0,0 chr3 44370 . A T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:5:0:0:26,26:0,0:0,0:1,1 48:8:0:0:40,40:0,0:0,0:0,0 chr3 44377 . C A,G . QSS_ref NT=het;QSS=230;QSS_NT=57;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:5:0:0:7,7:19,19:0,0:0,0 42:4:0:0:0,0:24,24:14,14:0,0 chr3 44598 . C G,T . QSS_ref NT=het;QSS=436;QSS_NT=72;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:16,16:0,0:13,13 61:0:0:0:0,0:51,51:10,10:0,0 chr3 44683 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:15,15:23,23:0,0 46:0:0:0:0,0:0,0:46,46:0,0 chr3 44782 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:3,3:33,33:0,0:0,0 59:0:0:0:0,0:59,59:0,0:0,0 chr3 44966 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:31,31:0,0:5,5:0,0 127:0:0:0:127,190:0,0:0,0:0,0 chr3 45014 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:1,1:0,0:0,0:40,40 140:0:0:0:0,0:0,0:0,0:140,192 chr3 45063 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:27,27:0,0:11,11:0,0 142:0:0:0:142,175:0,0:0,0:0,0 chr3 45224 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:3,3:31,31:0,0:0,0 200:0:0:0:0,0:200,216:0,0:0,0 chr3 45260 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:33,33:0,0:0,0:4,4 214:0:0:0:214,230:0,0:0,0:0,0 chr3 45318 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:13,13:0,0:16,16:0,0 200:0:0:0:0,0:0,0:200,221:0,0 chr3 45419 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:20,20:0,0:1,1:0,0 214:0:0:0:214,217:0,0:0,0:0,0 chr3 45435 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:26,26:1,1:0,0 218:0:0:0:0,0:218,221:0,0:0,0 chr3 45447 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:22,22:6,6:0,0:0,0 218:0:0:0:218,221:0,0:0,0:0,0 chr3 45587 . A C . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:21,21:9,9:0,0:0,0 201:0:0:0:201,202:0,0:0,0:0,0 chr3 45669 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:22,22:0,0:0,0:9,9 248:0:0:0:248,248:0,0:0,0:0,0 chr3 45739 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:24,24:11,11:0,0 217:0:0:0:0,0:217,220:0,0:0,0 chr3 45874 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:7,7:0,0:0,0:22,22 213:0:0:0:0,0:0,0:0,0:213,216 chr3 45972 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:19,19:0,0:2,2:0,0 238:0:0:0:238,240:0,0:0,0:0,0 chr3 46137 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:7,7:20,21:0,0:0,0 210:0:0:0:0,0:210,212:0,0:0,0 chr3 46199 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:2,2:0,0:34,34:0,0 212:0:0:0:0,0:0,0:212,216:0,0 chr3 46220 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:0,0:3,3:0,0:36,36 219:0:0:0:0,0:0,0:0,0:219,224 chr3 46324 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:30,30:3,3:0,0:0,0 162:0:0:0:162,190:0,0:0,0:0,0 chr3 46330 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:7,7:0,0:23,23 162:0:0:0:0,0:0,0:0,0:162,191 chr3 46572 . C A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:15,17:13,13:0,0 61:0:0:0:0,0:61,73:0,0:0,0 chr3 46969 . A C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:20,24:9,9:0,0:0,0 75:0:0:0:74,76:0,0:0,0:1,1 chr3 47013 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:29,31:7,7:0,0:0,0 77:0:0:0:76,78:0,0:1,1:0,0 chr3 47293 . T A,C . QSS_ref NT=het;QSS=109;QSS_NT=25;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:4,4:0,0:0,0:29,29 48:0:0:0:0,0:6,6:0,0:42,42 chr3 47459 . A C,G . QSS_ref NT=het;QSS=10;QSS_NT=10;SGT=AC->AG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 18:0:0:0:16,20:2,2:0,0:0,0 51:0:0:0:49,49:0,0:2,2:0,0 chr3 47474 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 16:0:0:0:0,0:0,0:16,20:0,0 53:0:0:0:0,0:2,2:51,51:0,0 chr3 47483 . G T . QSS_ref NT=conflict;QSS=1;QSS_NT=0;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 14:0:0:0:0,0:0,2:14,16:0,0 52:0:0:0:0,0:0,0:50,50:2,2 chr3 47555 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:23,23:0,0:0,0:7,7 60:0:0:0:54,54:0,0:0,0:6,6 chr3 47618 . C A,G . QSS_ref NT=het;QSS=143;QSS_NT=54;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:24,24:4,4:0,0 52:0:0:0:10,10:42,42:0,0:0,0 chr3 47658 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:33,33:1,1:0,0:0,0 44:0:0:0:44,44:0,0:0,0:0,0 chr3 47667 . C A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:35,35:0,0:2,2 44:0:0:0:5,5:39,39:0,0:0,0 chr3 47737 . G T . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:1,1:0,0:35,35:0,0 44:0:0:0:0,0:0,0:43,43:1,1 chr3 47783 . T A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:0,0:35,35 59:0:0:0:1,1:0,0:0,0:58,58 chr3 47804 . C A,T . QSS_ref NT=het;QSS=52;QSS_NT=4;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:3,3:36,36:0,0:0,0 63:0:0:0:0,0:57,57:0,0:6,6 chr3 47861 . C T . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:32,32:0,0:0,0 57:0:0:0:0,0:56,56:0,0:1,1 chr3 47870 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:1,1:0,0:31,31:0,0 60:0:0:0:4,4:0,0:56,56:0,0 chr3 47896 . G A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:8,8:29,29:0,0 48:0:0:0:1,1:0,0:47,47:0,0 chr3 47935 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:0,0:25,25 47:0:0:0:0,0:0,0:7,7:40,40 chr3 48017 . C G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:22,22:1,1:0,0 52:0:0:0:0,0:48,48:4,4:0,0 chr3 48047 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:26,26:2,2 53:0:0:0:0,0:0,0:53,53:0,0 chr3 48071 . C G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:29,29:0,0:0,0 59:0:0:0:0,0:58,58:1,1:0,0 chr3 48081 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:31,31:0,0:0,0:0,0 61:0:0:0:60,60:1,1:0,0:0,0 chr3 48100 . G C . PASS NT=ref;QSS=17;QSS_NT=17;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:32,32:0,0 64:0:0:0:0,0:3,3:61,61:0,0 chr3 48170 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 43:0:0:0:36,36:7,7:0,0:0,0 52:0:0:0:42,42:0,0:10,10:0,0 chr3 48243 . T A,G . QSS_ref NT=het;QSS=427;QSS_NT=66;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:13,13:0,0:0,0:24,24 48:0:0:0:0,0:0,0:10,10:38,38 chr3 48338 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:0,0:9,9:29,29 61:0:0:0:0,0:0,0:9,9:52,52 chr3 48382 . T G . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:2,2:0,0:0,0:34,34 53:0:0:0:0,0:0,0:2,2:51,51 chr3 48393 . T . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=TT->TT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:3,3:0,0:0,0:34,34 53:0:0:0:0,0:3,3:0,0:50,50 chr3 48406 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:35,35:0,0:3,3 51:0:0:0:0,0:46,46:0,0:5,5 chr3 48437 . T A,C . QSS_ref NT=het;QSS=201;QSS_NT=49;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:6,6:0,0:0,0:25,25 49:0:0:0:0,0:12,12:0,0:37,37 chr3 48720 . G C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:2,2:33,33:0,0 54:0:0:0:0,0:3,3:51,51:0,0 chr3 48740 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:20,20:13,13:0,0 55:0:0:0:0,0:39,39:16,16:0,0 chr3 49072 . T A,C . QSS_ref NT=het;QSS=179;QSS_NT=55;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:1:0:0:0,0:5,5:0,0:17,17 50:5:0:0:10,10:0,0:0,0:35,35 chr3 49255 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:0,0:35,35 57:0:0:0:0,0:2,2:0,0:55,55 chr3 49273 . T C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:3,3:29,29 59:0:0:0:0,0:3,3:0,0:56,56 chr3 49303 . T A,C . QSS_ref NT=het;QSS=17;QSS_NT=17;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:3,3:0,0:29,29 51:0:0:0:2,2:0,0:0,0:49,49 chr3 49363 . T G . QSS_ref NT=het;QSS=5;QSS_NT=3;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:3,3:0,0:27,27 41:0:0:0:0,0:0,0:4,4:37,37 chr3 49401 . A C,T . QSS_ref NT=het;QSS=79;QSS_NT=39;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:26,26:4,4:0,0:0,0 43:0:0:0:38,38:0,0:0,0:5,5 chr3 49426 . C A,G . QSS_ref NT=het;QSS=32;QSS_NT=32;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:20,20:3,3:0,0 40:0:0:0:3,3:37,37:0,0:0,0 chr3 49458 . T C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:2,2:23,23 43:0:0:0:0,0:3,3:0,0:40,40 chr3 49496 . G T . PASS NT=ref;QSS=25;QSS_NT=25;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:29,29:0,0 58:0:0:0:0,0:0,0:49,49:9,9 chr3 49581 . T C . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:1,1:0,0:0,0:24,24 56:0:0:0:0,0:4,4:0,0:52,52 chr3 49628 . C G . PASS NT=ref;QSS=21;QSS_NT=20;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:26,26:0,0:1,1 49:0:0:0:0,0:41,41:8,8:0,0 chr3 49689 . T C . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:0,0:28,28 39:0:0:0:0,0:4,4:0,0:35,35 chr3 49721 . G A . QSS_ref NT=ref;QSS=6;QSS_NT=6;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:35,35:0,0 39:0:0:0:1,1:0,0:38,38:0,0 chr3 49753 . T . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=TT->TT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:0,0:35,35 44:0:0:0:2,2:0,0:0,0:42,42 chr3 49757 . T A,G . QSS_ref NT=het;QSS=150;QSS_NT=49;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:8,8:26,26 42:0:0:0:5,5:0,0:0,0:37,37 chr3 49855 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:4:0:0:0,0:0,0:0,0:31,31 63:9:0:0:0,0:0,0:6,6:48,48 chr3 49995 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:30,30:0,0 50:0:0:0:1,1:0,0:49,49:0,0 chr3 50000 . T C,G . QSS_ref NT=het;QSS=91;QSS_NT=30;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:4,4:0,0:27,27 48:0:0:0:0,0:0,0:5,5:43,43 chr3 50050 . A G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:33,33:0,0:5,5:0,0 43:0:0:0:38,38:0,0:0,0:5,5 chr3 50104 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:28,28:3,3:0,0:0,0 48:0:0:0:45,45:0,0:3,3:0,0 chr3 50128 . C T . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:30,30:0,0:0,0 55:0:0:0:0,0:49,49:0,0:6,6 chr3 50231 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:8,8:0,0:0,0:22,22 60:0:0:0:0,0:11,11:0,0:49,49 chr3 50281 . A G,T . QSS_ref NT=het;QSS=158;QSS_NT=49;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:4:0:0:22,22:0,0:0,0:6,6 49:3:0:0:32,32:0,0:14,14:0,0 chr3 50361 . C A . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:11:0:0:0,0:22,22:0,1:0,0 37:13:0:0:1,1:23,24:0,0:0,0 chr3 50369 . C A,T . QSS_ref NT=het;QSS=128;QSS_NT=55;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:7:0:0:0,0:17,18:0,0:4,4 35:10:0:0:4,5:21,21:0,0:0,0 chr3 50481 . G T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:24,27:0,0 58:0:0:0:0,0:0,0:56,56:2,2 chr3 50514 . C G . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:36,36:0,0:0,0 55:0:0:0:0,0:52,52:3,3:0,0 chr3 50548 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:34,34:2,2:0,0 52:0:0:0:0,0:47,47:5,5:0,0 chr3 50578 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:23,23:0,0:4,4 49:0:0:0:0,0:44,44:0,0:5,5 chr3 50600 . A C,G . QSS_ref NT=het;QSS=209;QSS_NT=61;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:20,20:6,6:0,0:0,0 48:0:0:0:42,42:0,0:6,6:0,0 chr3 50642 . G T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:23,23:0,0 52:0:0:0:0,0:0,0:48,48:4,4 chr3 50666 . G C,T . QSS_ref NT=het;QSS=302;QSS_NT=61;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:8,8:18,18:0,0 43:0:0:0:0,0:0,0:35,35:8,8 chr3 50779 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:25,25:1,1:0,0:0,0 54:0:0:0:52,52:0,0:2,2:0,0 chr3 50833 . T A,G . QSS_ref NT=het;QSS=36;QSS_NT=16;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:3,3:30,30 59:0:0:0:3,3:0,0:0,0:56,56 chr3 50853 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:31,31:0,0:0,0 56:0:0:0:0,0:54,54:2,2:0,0 chr3 50874 . G A,C . QSS_ref NT=het;QSS=113;QSS_NT=32;SGT=AG->CG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:4,4:0,0:24,26:0,0 52:0:0:0:0,0:9,9:43,43:0,0 chr3 50902 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:0,0:0,0:0,0:20,26 53:0:0:0:0,0:0,0:1,1:52,52 chr3 51107 . G C,T . QSS_ref NT=het;QSS=5;QSS_NT=5;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:2,2:27,27:0,0 54:0:0:0:0,0:0,0:51,51:3,3 chr3 51115 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:21,21:2,2 57:0:0:0:0,0:0,0:57,57:0,0 chr3 51121 . A C,T . QSS_ref NT=het;QSS=58;QSS_NT=46;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:20,20:4,4:0,0:0,0 56:0:0:0:47,47:0,0:0,0:9,9 chr3 51274 . G T . QSS_ref NT=ref;QSS=13;QSS_NT=13;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:3:0:0:0,0:0,0:23,23:0,0 50:8:0:0:0,0:0,0:40,40:2,2 chr3 51294 . A C . QSS_ref NT=ref;QSS=7;QSS_NT=7;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:8:0:0:26,26:0,0:0,0:0,0 45:10:0:0:34,34:1,1:0,0:0,0 chr3 51695 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:23,23:2,2 61:0:0:0:8,8:0,0:53,53:0,0 chr3 51713 . C A,G . QSS_ref NT=het;QSS=19;QSS_NT=19;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:2,2:21,21:0,0:0,0 58:0:0:0:0,0:56,56:2,2:0,0 chr3 51727 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:0,0:2,2:20,20 61:0:0:0:0,0:0,0:3,3:58,58 chr3 51752 . T C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:11,11:0,0:17,17 65:0:0:0:0,0:0,0:4,4:61,61 chr3 51764 . G C . PASS NT=ref;QSS=35;QSS_NT=35;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:24,24:0,0 63:0:0:0:0,0:23,23:40,40:0,0 chr3 51867 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:32,32:0,0:1,1:0,0 55:0:0:0:54,54:1,1:0,0:0,0 chr3 51877 . C A,T . QSS_ref NT=het;QSS=342;QSS_NT=63;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:11,11:21,21:0,0:0,0 54:0:0:0:0,0:46,46:0,0:8,8 chr3 51997 . C G . PASS NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:34,34:0,0:0,0 56:0:0:0:0,0:53,53:3,3:0,0 chr3 52017 . T G . QSS_ref NT=het;QSS=7;QSS_NT=5;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:2,2:0,0:0,0:30,30 55:0:0:0:0,0:0,0:2,2:53,53 chr3 52039 . C A,T . QSS_ref NT=het;QSS=272;QSS_NT=51;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:7,7:23,23:0,0:0,0 57:0:0:0:0,0:44,44:0,0:13,13 chr3 52086 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:27,27:0,0:0,0 59:0:0:0:0,0:49,49:10,10:0,0 chr3 52193 . C G . PASS NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:27,27:0,0:0,0 47:0:0:0:0,0:41,41:6,6:0,0 chr3 52337 . T A . PASS NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:0,0:0,0:36,36 69:0:0:0:1,1:0,0:0,0:68,68 chr3 52521 . G C,T . BCNoise;QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:14:0:0:0,0:0,0:23,23:3,3 52:24:0:0:0,0:2,2:26,26:0,0 chr3 52593 . A C,T . QSS_ref NT=het;QSS=158;QSS_NT=54;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:4:0:0:17,17:0,0:0,0:5,5 55:9:0:0:27,27:19,19:0,0:0,0 chr3 52737 . G A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:9:0:0:6,6:0,0:24,24:0,0 54:12:0:0:0,0:0,0:40,41:2,2 chr3 52797 . T C,G . QSS_ref NT=het;QSS=70;QSS_NT=55;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:3:0:0:0,0:0,0:8,8:22,22 58:13:0:0:0,0:3,3:0,0:42,42 chr3 52842 . T A . PASS NT=ref;QSS=15;QSS_NT=15;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:5:0:0:0,0:0,0:0,0:26,26 56:18:0:0:3,3:0,0:0,0:35,35 chr3 52856 . C T . BCNoise NT=ref;QSS=20;QSS_NT=20;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:6:0:0:0,0:29,31:0,0:0,0 55:22:0:0:0,0:29,31:0,0:4,4 chr3 52920 . C G,T . QSS_ref NT=het;QSS=30;QSS_NT=30;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:11:0:0:0,0:21,21:6,6:0,0 45:16:0:0:0,0:27,27:0,0:2,2 chr3 52987 . G A,C . QSS_ref NT=het;QSS=306;QSS_NT=62;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:4:0:0:0,0:8,8:17,17:0,0 45:4:0:0:11,11:0,0:30,30:0,0 chr3 53080 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:25,25:0,0:0,0 56:0:0:0:0,0:51,51:0,0:5,5 chr3 53140 . G A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:7,7:21,21:0,0 65:0:0:0:14,14:0,0:51,51:0,0 chr3 53250 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:0,0:0,0:30,30:9,9 53:0:0:0:0,0:0,0:51,51:2,2 chr3 53276 . C A . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:35,35:0,0:0,0 51:0:0:0:5,5:46,46:0,0:0,0 chr3 53323 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:30,30:0,0:0,0 53:0:0:0:0,0:51,51:2,2:0,0 chr3 53329 . T A,C . QSS_ref NT=het;QSS=130;QSS_NT=50;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:4,4:0,0:0,0:24,24 50:0:0:0:0,0:8,8:0,0:42,42 chr3 53412 . T C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:8,8:0,0:29,29 53:0:0:0:0,0:0,0:12,12:41,41 chr3 53476 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:24,24:2,2:0,0:0,0 60:0:0:0:53,53:7,7:0,0:0,0 chr3 53496 . G T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:26,26:0,0 69:0:0:0:0,0:0,0:67,67:2,2 chr3 53506 . G T . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:23,23:0,0 70:0:0:0:0,0:0,0:65,65:5,5 chr3 53529 . A G,T . QSS_ref NT=het;QSS=226;QSS_NT=61;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:15,15:0,0:0,0:6,6 68:0:0:0:48,48:0,0:20,20:0,0 chr3 53697 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:5,5:23,23 42:0:0:0:0,0:0,0:13,13:29,29 chr3 53776 . A C,T . QSS_ref NT=het;QSS=179;QSS_NT=63;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:21,21:11,11:0,0:0,0 54:0:0:0:49,49:0,0:0,0:5,5 chr3 53812 . C A . QSS_ref NT=ref;QSS=13;QSS_NT=13;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:24,24:0,0:0,0 63:0:0:0:2,2:61,61:0,0:0,0 chr3 53821 . T C . QSS_ref NT=het;QSS=5;QSS_NT=5;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:2,2:24,24 61:0:0:0:0,0:6,6:0,0:55,55 chr3 53933 . G A,C . BCNoise;QSS_ref NT=het;QSS=79;QSS_NT=53;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:10:0:0:3,4:0,0:11,16:0,0 44:27:0:0:0,0:3,3:14,22:0,1 chr3 54209 . C A . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:7:0:0:0,0:26,26:0,0:0,0 51:7:0:0:4,4:40,40:0,0:0,0 chr3 54259 . C A . PASS NT=ref;QSS=29;QSS_NT=29;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:1:0:0:0,0:27,27:0,0:0,0 40:0:0:0:8,8:32,32:0,0:0,0 chr3 54332 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:7,7:30,30 44:0:0:0:14,14:0,0:0,0:30,30 chr3 54433 . G A . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:30,30:0,0 60:0:0:0:1,1:0,0:59,59:0,0 chr3 54476 . G T . PASS NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:6:0:0:0,0:0,0:24,24:0,0 55:8:0:0:0,0:0,0:40,40:7,7 chr3 54514 . C G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CC->CG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:10:0:0:0,0:28,28:0,0:0,0 56:16:0:0:0,0:36,38:4,4:0,0 chr3 54526 . G A,T . BCNoise;QSS_ref NT=het;QSS=36;QSS_NT=33;SGT=AG->GT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:15:0:0:2,2:0,0:18,23:0,0 51:24:0:0:0,0:0,0:20,24:7,10 chr3 54601 . A T . QSS_ref NT=het;QSS=3;QSS_NT=2;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:3:0:0:31,31:0,0:2,2:0,0 35:5:0:0:28,28:0,0:0,0:2,2 chr3 54611 . C T . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:3:0:0:0,0:31,31:1,1:0,0 36:4:0:0:0,0:30,30:0,0:2,2 chr3 54630 . C A,G . QSS_ref NT=het;QSS=434;QSS_NT=63;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:2:0:0:0,0:23,23:12,12:0,0 39:0:0:0:12,12:27,27:0,0:0,0 chr3 54756 . A C,G . QSS_ref NT=het;QSS=80;QSS_NT=26;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:32,32:0,0:4,4:0,0 52:0:0:0:48,48:4,4:0,0:0,0 chr3 54868 . C A . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:34,34:0,0:0,0 48:0:0:0:1,1:47,47:0,0:0,0 chr3 54873 . A C,T . QSS_ref NT=het;QSS=77;QSS_NT=55;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:23,23:10,10:0,0:0,0 44:0:0:0:41,41:0,0:0,0:3,3 chr3 54974 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:1,1:35,35:0,0 57:0:0:0:0,0:0,0:57,57:0,0 chr3 55019 . T A . QSS_ref NT=het;QSS=2;QSS_NT=1;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:4,4:0,0:0,0:38,38 61:0:0:0:0,0:0,0:2,2:59,59 chr3 55036 . G T . PASS NT=ref;QSS=22;QSS_NT=22;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:35,35:0,0 53:0:0:0:0,0:0,0:47,47:6,6 chr3 55125 . C A . PASS NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:29,29:0,0:0,0 47:0:0:0:2,2:45,45:0,0:0,0 chr3 55148 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:31,31:0,0:0,0:2,2 50:0:0:0:49,49:0,0:1,1:0,0 chr3 55161 . T C . PASS NT=ref;QSS=20;QSS_NT=20;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:0,0:0,0:38,38 49:0:0:0:0,0:3,3:0,0:46,46 chr3 55182 . A G . PASS NT=ref;QSS=19;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:35,37:1,1:0,0:0,0 55:0:0:0:52,52:0,0:3,3:0,0 chr3 55193 . C G . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:37,40:0,0:0,0 58:0:0:0:0,0:56,56:2,2:0,0 chr3 55215 . C G,T . QSS_ref NT=het;QSS=32;QSS_NT=18;SGT=CT->CG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:27,33:0,0:3,3 58:0:0:0:0,0:52,52:6,6:0,0 chr3 55270 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 18:0:0:0:11,20:0,0:7,7:0,0 67:0:0:0:59,59:8,8:0,0:0,0 chr3 55323 . C A,T . QSS_ref NT=het;QSS=236;QSS_NT=61;SGT=CT->AC;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 12:0:0:0:0,0:6,15:0,0:6,6 51:0:0:0:14,14:37,37:0,0:0,0 chr3 55435 . G C . QSS_ref NT=het;QSS=2;QSS_NT=2;SGT=CG->CG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 13:0:0:0:0,0:0,0:11,26:2,2 52:0:0:0:0,0:4,4:48,48:0,0 chr3 55479 . A T . QSS_ref NT=conflict;QSS=3070;QSS_NT=0;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 16:0:0:0:15,34:1,1:0,0:0,0 49:0:0:0:48,48:0,0:0,0:1,1 chr3 55484 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 15:0:0:0:0,0:5,5:0,0:10,29 51:0:0:0:0,0:0,0:0,0:51,51 chr3 55507 . G A . QSS_ref NT=ref;QSS=11;QSS_NT=11;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 17:0:0:0:0,0:0,0:17,35:0,0 52:0:0:0:3,3:0,0:49,49:0,0 chr3 55535 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 16:0:0:0:2,2:0,0:14,30:0,0 52:0:0:0:0,0:1,1:51,51:0,0 chr3 55561 . T C,G . QSS_ref NT=het;QSS=96;QSS_NT=41;SGT=GT->CT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 10:0:0:0:0,0:0,0:4,4:6,22 52:0:0:0:0,0:7,7:0,0:45,45 chr3 55599 . T A . QSS_ref NT=het;QSS=6;QSS_NT=6;SGT=TT->AT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 12:0:0:0:0,0:0,0:2,2:10,23 37:0:0:0:3,3:0,0:0,0:34,34 chr3 55684 . G C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:23,33:0,0 51:0:0:0:0,0:4,4:47,47:0,0 chr3 55772 . G A . QSS_ref NT=conflict;QSS=1;QSS_NT=0;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 0:0:0:0:0,0:0,0:0,10:0,5 54:0:0:0:11,11:0,0:43,43:0,0 chr3 56032 . A G . QSS_ref NT=ref;QSS=3;QSS_NT=1;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 0:0:0:0:0,17:0,0:0,0:0,0 31:4:0:0:26,26:0,0:1,1:0,0 chr4 478 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 10:0:0:0:0,0:0,0:0,0:10,10 61:0:0:0:0,0:0,0:4,4:57,57 chr4 589 . T A,C . QSS_ref NT=het;QSS=227;QSS_NT=56;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:7,7:0,0:0,0:20,20 43:0:0:0:0,0:7,7:0,0:36,36 chr4 845 . C A,T . QSS_ref NT=het;QSS=79;QSS_NT=11;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 46:0:0:0:5,5:41,41:0,0:0,0 49:0:0:0:0,0:45,45:0,0:4,4 chr4 924 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:6,6:22,22 51:0:0:0:3,3:0,0:0,0:48,48 chr4 995 . C A,G . QSS_ref NT=het;QSS=159;QSS_NT=58;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:0,0:15,15:5,5:0,0 48:0:0:0:7,7:41,41:0,0:0,0 chr4 1055 . A T . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:20,20:1,1:0,0:0,0 56:0:0:0:48,48:0,0:0,0:8,8 chr4 1098 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:0,0:26,26 60:0:0:0:0,0:1,1:0,0:59,59 chr4 1099 . A C,T . QSS_ref NT=het;QSS=67;QSS_NT=47;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:21,21:5,5:0,0:0,0 59:0:0:0:56,56:0,0:0,0:3,3 chr4 1163 . T G . QSS_ref NT=ref;QSS=10;QSS_NT=10;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:0,0:34,34 54:0:0:0:0,0:0,0:5,5:49,49 chr4 1194 . G A,C . QSS_ref NT=het;QSS=87;QSS_NT=27;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:6:0:0:0,0:4,4:28,28:0,0 48:4:0:0:4,4:0,0:40,40:0,0 chr4 1317 . T C . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:4:0:0:0,0:0,0:0,0:29,29 49:9:0:0:0,0:1,1:0,0:39,39 chr4 1328 . G C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:3:0:0:0,0:0,0:31,31:0,0 49:8:0:0:0,0:1,1:40,40:0,0 chr4 1480 . C G . QSS_ref NT=ref;QSS=13;QSS_NT=13;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:22,22:0,0:0,0 38:0:0:0:0,0:37,37:1,1:0,0 chr4 1492 . C G . QSS_ref NT=ref;QSS=14;QSS_NT=10;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:1,1:21,21:0,0:0,0 39:0:0:0:0,0:35,35:4,4:0,0 chr4 1594 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:1,1:26,26 43:0:0:0:0,0:3,3:0,0:40,40 chr4 1608 . G C,T . QSS_ref NT=het;QSS=39;QSS_NT=23;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:3,3:27,27:0,0 47:0:0:0:0,0:0,0:44,44:3,3 chr4 1649 . C A,T . QSS_ref NT=het;QSS=171;QSS_NT=47;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:24,24:0,0:5,5 43:0:0:0:6,6:37,37:0,0:0,0 chr4 1717 . C T . QSS_ref NT=ref;QSS=16;QSS_NT=14;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:5:0:0:0,0:23,23:1,1:0,0 43:3:0:0:0,0:35,35:0,0:5,5 chr4 1785 . G A,T . BCNoise;QSS_ref NT=het;QSS=157;QSS_NT=69;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:12:0:0:0,0:0,0:6,6:8,8 48:21:0:0:4,4:0,1:23,23:0,0 chr4 1851 . C T . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:2:0:0:0,0:24,24:0,0:0,0 47:7:0:0:0,0:37,37:0,0:3,3 chr4 1976 . T A,C . QSS_ref NT=het;QSS=57;QSS_NT=33;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:3,3:0,0:23,23 48:0:0:0:7,7:0,0:0,0:41,41 chr4 2017 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:0,0:24,24 53:0:0:0:0,0:0,0:5,5:48,48 chr4 2084 . G A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:25,25:3,3 64:0:0:0:5,5:0,0:59,59:0,0 chr4 2152 . G A,C . QSS_ref NT=het;QSS=126;QSS_NT=35;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:5,5:27,27:0,0 48:0:0:0:11,11:0,0:37,37:0,0 chr4 2350 . A C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:26,26:0,0:0,0:0,0 52:0:0:0:50,50:2,2:0,0:0,0 chr4 2373 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:28,28:0,0:0,0:6,6 52:0:0:0:35,35:0,0:0,0:17,17 chr4 2474 . C T . PASS NT=ref;QSS=17;QSS_NT=17;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:33,33:0,0:0,0 50:0:0:0:0,0:49,49:0,0:1,1 chr4 2566 . C G . PASS NT=ref;QSS=15;QSS_NT=15;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:3:0:0:0,0:23,23:0,0:0,0 56:10:0:0:0,0:41,41:5,5:0,0 chr4 2596 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:5:0:0:0,0:0,0:9,9:20,20 56:18:0:0:0,0:0,0:7,7:31,31 chr4 2658 . C T . QSS_ref NT=ref;QSS=8;QSS_NT=8;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 45:12:0:0:0,0:33,33:0,0:0,0 51:18:0:0:0,0:32,33:0,0:1,2 chr4 2697 . C T . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 43:8:0:0:2,2:33,33:0,0:0,0 48:7:0:0:0,0:35,35:0,0:6,6 chr4 2735 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:2:0:0:0,0:0,0:0,0:33,33 55:1:0:0:1,1:0,0:0,0:53,53 chr4 2820 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:20,20:0,0:8,8:0,0 55:0:0:0:50,50:0,0:5,5:0,0 chr4 2830 . T C . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:0,0:30,30 52:0:0:0:0,0:15,15:0,0:37,37 chr4 2910 . G A,C . QSS_ref NT=het;QSS=59;QSS_NT=9;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:4,4:0,0:36,36:0,0 49:0:0:0:0,0:7,7:42,42:0,0 chr4 3000 . C G,T . QSS_ref NT=het;QSS=36;QSS_NT=30;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:26,26:4,4:0,0 51:0:0:0:0,0:47,47:0,0:4,4 chr4 3098 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:1,1:0,0:30,30 57:0:0:0:4,4:0,0:0,0:53,53 chr4 3115 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:3,3:29,29:0,0:0,0 51:0:0:0:0,0:45,45:0,0:6,6 chr4 3135 . C A,T . QSS_ref NT=het;QSS=5;QSS_NT=5;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:0,0:36,36:0,0:5,5 43:0:0:0:2,2:41,41:0,0:0,0 chr4 3166 . T A,C . QSS_ref NT=het;QSS=35;QSS_NT=12;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 47:0:0:0:0,0:3,3:0,0:44,44 47:0:0:0:3,3:0,0:0,0:44,44 chr4 3215 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 44:0:0:0:0,0:0,0:37,37:7,7 50:0:0:0:0,0:0,0:47,47:3,3 chr4 3242 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:37,37:0,0:0,0 48:0:0:0:0,0:46,46:0,0:2,2 chr4 3271 . C A,G . QSS_ref NT=het;QSS=46;QSS_NT=28;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:24,24:4,4:0,0 44:0:0:0:8,8:36,36:0,0:0,0 chr4 3435 . A C,T . QSS_ref NT=het;QSS=152;QSS_NT=31;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:32,32:5,5:0,0:0,0 54:0:0:0:48,48:0,0:0,0:6,6 chr4 3462 . G A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:2,2:34,34:0,0 53:0:0:0:2,2:0,0:51,51:0,0 chr4 3526 . C G,T . QSS_ref NT=het;QSS=105;QSS_NT=27;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:28,28:0,0:4,4 55:0:0:0:0,0:47,47:8,8:0,0 chr4 3676 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:4,4:23,23:0,0 61:0:0:0:0,0:0,0:61,61:0,0 chr4 3677 . T C . PASS NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:0,0:27,27 61:0:0:0:0,0:5,5:0,0:56,56 chr4 3731 . A C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:25,25:4,4:0,0:0,0 58:0:0:0:56,56:0,0:0,0:2,2 chr4 3814 . T A,C . QSS_ref NT=het;QSS=63;QSS_NT=26;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:3,3:0,0:0,0:26,26 57:0:0:0:0,0:10,10:0,0:47,47 chr4 3877 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:0,0:27,27 50:0:0:0:0,0:0,0:2,2:48,48 chr4 3897 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:23,23:6,6:0,0:0,0 53:0:0:0:43,43:0,0:10,10:0,0 chr4 3992 . A T . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:37,37:0,0:0,0:0,0 71:0:0:0:66,66:0,0:0,0:5,5 chr4 4009 . G A,T . QSS_ref NT=het;QSS=31;QSS_NT=30;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:8,8:0,0:32,32:0,0 70:0:0:0:0,0:0,0:68,68:2,2 chr4 4019 . T A . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 43:0:0:0:0,0:0,0:0,0:43,43 68:0:0:0:9,9:0,0:0,0:59,59 chr4 4072 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:3,3:0,0:31,31:0,0 69:0:0:0:7,7:0,0:62,62:0,0 chr4 4100 . G A,C . QSS_ref NT=het;QSS=138;QSS_NT=37;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:5,5:0,0:26,26:0,0 56:0:0:0:0,0:5,5:51,51:0,0 chr4 4133 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:31,31:0,0 55:0:0:0:0,0:2,2:53,53:0,0 chr4 4152 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:13,13:0,0:0,0:22,22 51:0:0:0:0,0:0,0:1,1:50,50 chr4 4160 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:36,36:0,0:0,0:0,0 57:0:0:0:42,42:15,15:0,0:0,0 chr4 4291 . G A,C . QSS_ref NT=het;QSS=306;QSS_NT=67;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:8,8:18,18:0,0 63:6:0:0:15,15:0,0:42,42:0,0 chr4 4378 . G A,T . QSS_ref;BCNoise NT=het;QSS=76;QSS_NT=38;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:10:0:0:3,3:0,0:21,21:0,0 67:31:0:0:0,0:0,0:28,28:8,8 chr4 4417 . A C,G . QSS_ref NT=het;QSS=219;QSS_NT=53;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:3:0:0:23,23:0,0:6,6:0,0 55:13:0:0:31,31:11,11:0,0:0,0 chr4 4529 . G C . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:4:0:0:0,0:0,0:27,27:0,0 51:14:0:0:0,0:3,4:34,35:0,0 chr4 4538 . C G,T . QSS_ref NT=het;QSS=196;QSS_NT=51;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:5:0:0:0,0:21,21:0,0:6,6 46:12:0:0:0,0:26,27:8,8:0,0 chr4 4690 . G C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:3:0:0:0,0:0,0:27,27:0,0 62:6:0:0:0,0:16,16:40,40:0,0 chr4 4777 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:33,33:0,0:0,0:0,0 45:0:0:0:43,43:0,0:2,2:0,0 chr4 4793 . C A,G . QSS_ref NT=het;QSS=160;QSS_NT=35;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:5,5:28,28:0,0:0,0 45:0:0:0:0,0:33,33:12,12:0,0 chr4 4939 . C A,G . QSS_ref NT=het;QSS=96;QSS_NT=43;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:4:0:0:0,0:21,21:4,4:0,0 58:17:0:0:5,5:36,36:0,0:0,0 chr4 4983 . T A,G . QSS_ref;BCNoise NT=het;QSS=52;QSS_NT=52;SGT=AT->GT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:10:0:0:2,2:0,0:0,0:12,14 66:38:0:0:0,0:0,0:3,3:25,39 chr4 4993 . T G . BCNoise;QSS_ref NT=ref;QSS=3;QSS_NT=2;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:15:0:0:0,0:0,0:0,0:7,11 71:50:0:0:0,0:0,0:1,2:20,30 chr4 5021 . G C . BCNoise;QSS_ref NT=het;QSS=5;QSS_NT=4;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:13:0:0:1,1:0,0:13,14:0,1 59:35:0:0:0,0:2,3:22,24:0,1 chr4 5034 . G C,T . QSS_ref;BCNoise NT=het;QSS=97;QSS_NT=66;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:7:0:0:0,0:0,0:9,9:8,9 54:29:0:0:0,0:3,3:22,22:0,0 chr4 5151 . A G,T . QSS_ref NT=het;QSS=49;QSS_NT=33;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:25,25:0,0:3,3:0,0 41:0:0:0:37,37:0,0:0,0:4,4 chr4 5185 . T A . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:0,0:25,25 46:0:0:0:3,3:0,0:0,0:43,43 chr4 5214 . A C,G . QSS_ref NT=het;QSS=83;QSS_NT=27;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:28,28:4,4:0,0:0,0 58:0:0:0:54,54:0,0:4,4:0,0 chr4 5249 . T A,G . QSS_ref NT=het;QSS=14;QSS_NT=14;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:2,2:26,26 65:0:0:0:4,4:0,0:0,0:61,61 chr4 5279 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:38,38:0,0:0,0:1,1 65:0:0:0:61,61:0,0:4,4:0,0 chr4 5325 . A C . PASS NT=ref;QSS=17;QSS_NT=17;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:31,31:0,0:0,0:0,0 57:0:0:0:54,54:3,3:0,0:0,0 chr4 5349 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:31,31:0,0:2,2:0,0 65:0:0:0:60,60:0,0:0,0:5,5 chr4 5372 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:1,1:0,0:25,25 63:0:0:0:0,0:0,0:9,9:54,54 chr4 5402 . T A,G . QSS_ref NT=het;QSS=286;QSS_NT=61;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:8,8:0,0:0,0:21,21 54:0:0:0:0,0:0,0:9,9:45,45 chr4 5480 . C G . QSS_ref NT=het;QSS=2;QSS_NT=2;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:2,2:28,28:0,0:0,0 49:0:0:0:0,0:44,44:5,5:0,0 chr4 5512 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:1,1:28,28 49:0:0:0:0,0:0,0:1,1:48,48 chr4 5547 . T C . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:0,0:29,29 56:0:0:0:0,0:5,5:0,0:51,51 chr4 5581 . G C . QSS_ref NT=het;QSS=3;QSS_NT=3;SGT=GG->CG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:23,27:2,2 50:2:0:0:0,0:5,5:43,43:0,0 chr4 5743 . G A . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:34,34:1,1 55:11:0:0:1,1:0,0:43,43:0,0 chr4 5756 . G T . PASS NT=ref;QSS=18;QSS_NT=18;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:34,34:0,0 55:9:0:0:0,0:0,0:45,45:1,1 chr4 5766 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:35,35:0,0:0,0:0,0 55:4:0:0:50,50:1,1:0,0:0,0 chr4 5835 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:8:0:0:0,0:0,1:5,5:16,16 42:13:0:0:4,4:0,0:0,0:25,28 chr4 5903 . C A,G . QSS_ref NT=het;QSS=32;QSS_NT=32;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:5:0:0:3,3:17,17:0,0:0,0 53:7:0:0:0,0:44,44:2,2:0,0 chr4 5915 . T G . QSS_ref NT=ref;QSS=13;QSS_NT=13;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:7:0:0:0,0:0,0:0,0:22,22 56:10:0:0:0,0:0,0:1,1:45,45 chr4 5962 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:7:0:0:1,1:24,24:0,0:0,0 45:11:0:0:2,2:32,33:0,0:0,0 chr4 6045 . G A . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:5:0:0:0,0:0,0:31,31:0,0 62:13:0:0:9,9:0,0:40,40:0,0 chr4 6089 . C A,G . QSS_ref NT=het;QSS=5;QSS_NT=5;SGT=CG->AC;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:4:0:0:0,0:15,19:2,2:0,0 57:16:0:0:5,5:36,36:0,0:0,0 chr4 6129 . G T . BCNoise;QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 7:5:0:0:0,0:0,0:2,14:0,0 51:31:0:0:0,0:0,0:19,34:1,1 chr4 6225 . A C . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:24,26:0,0:0,0:0,0 50:3:0:0:44,44:3,3:0,0:0,0 chr4 6249 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:1,1:34,34 45:0:0:0:0,0:2,2:0,0:43,43 chr4 6277 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:0,0:37,37 45:0:0:0:1,1:0,0:0,0:44,44 chr4 6299 . A G . QSS_ref NT=ref;QSS=6;QSS_NT=6;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:36,36:0,0:0,0:0,0 41:0:0:0:34,34:0,0:7,7:0,0 chr4 6468 . G A,C . QSS_ref NT=het;QSS=15;QSS_NT=15;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:2,2:0,0:19,24:0,0 65:0:0:0:0,0:4,4:61,61:0,0 chr4 6512 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:5:0:0:0,0:0,0:30,30:0,0 62:4:0:0:4,4:0,0:54,54:0,0 chr4 6519 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:5:0:0:30,30:1,1:0,0:0,0 61:5:0:0:56,56:0,0:0,0:0,0 chr4 6542 . C A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:7:0:0:0,0:26,26:0,0:1,1 63:11:0:0:2,2:50,51:0,0:0,0 chr4 6562 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:11:0:0:0,0:0,0:1,1:19,25 68:25:0:0:0,0:1,1:0,0:42,51 chr4 6568 . T C,G . BCNoise;QSS_ref NT=het;QSS=83;QSS_NT=51;SGT=CT->GT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:11:0:0:0,0:6,6:0,0:14,21 69:28:0:0:0,0:0,0:3,3:38,47 chr4 6622 . A G . QSS_ref NT=het;QSS=1;QSS_NT=0;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 7:1:0:0:5,17:0,0:1,1:0,0 78:12:0:0:65,66:0,0:0,0:1,1 chr4 6627 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 6:0:0:0:0,0:0,0:0,0:6,21 79:11:0:0:0,0:3,3:0,0:65,67 chr4 6636 . G A . QSS_ref NT=conflict;QSS=1;QSS_NT=0;SGT=AG->AG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 5:0:0:0:0,0:0,0:4,19:1,1 77:10:0:0:1,1:0,0:66,69:0,0 chr4 6653 . A T . QSS_ref NT=conflict;QSS=3070;QSS_NT=0;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 2:0:0:0:2,11:0,0:0,6:0,0 79:7:0:0:70,74:0,0:0,0:2,2 chr4 6693 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 14:0:0:0:0,0:0,0:14,22:0,0 59:0:0:0:4,4:0,0:55,62:0,0 chr4 6724 . T C,G . QSS_ref NT=het;QSS=28;QSS_NT=28;SGT=CT->GT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:8,8:0,0:15,16 50:0:0:0:0,0:0,0:1,1:49,61 chr4 7456 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:24,24:0,0:0,0:1,1 0:0:0:0:0,0:0,0:0,0:0,0 chr4 7837 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:32,32:0,0:5,5 0:0:0:0:0,0:0,0:0,0:0,0 chr4 8419 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:2,2:32,32:0,0 0:0:0:0:0,0:0,0:0,0:0,0 chr4 10203 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:28,28:0,0:2,2 37:0:0:0:0,0:37,69:0,0:0,0 chr4 10356 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:18,18:6,6 58:0:0:0:0,0:0,0:58,68:0,0 chr4 10876 . C G,T . QSS_ref NT=het;QSS=22;QSS_NT=22;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:29,29:4,4:0,0 41:0:0:0:0,0:38,38:0,0:3,3 chr4 10920 . G C,T . QSS_ref NT=het;QSS=57;QSS_NT=32;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:4,4:26,26:0,0 43:0:0:0:0,0:0,0:40,40:3,3 chr4 10970 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:30,30:0,0:3,3 46:0:0:0:7,7:39,39:0,0:0,0 chr4 11045 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:34,34:0,0:2,2 49:0:0:0:0,0:44,44:0,0:5,5 chr4 11087 . A C,G . QSS_ref NT=het;QSS=17;QSS_NT=15;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:30,30:0,0:2,2:0,0 44:0:0:0:39,39:5,5:0,0:0,0 chr4 11121 . T A,G . QSS_ref NT=het;QSS=168;QSS_NT=62;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:8,8:20,20 51:0:0:0:5,5:0,0:0,0:46,46 chr4 11145 . C T . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:24,24:0,0:0,0 55:0:0:0:0,0:50,50:0,0:5,5 chr4 11178 . C A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:0,0:20,20:0,0:0,0 59:0:0:0:9,9:50,50:0,0:0,0 chr4 11212 . G A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:2,2:0,0:18,18:0,0 61:0:0:0:0,0:0,0:55,55:6,6 chr4 11247 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:17,17:0,0:8,8 60:0:0:0:1,1:59,59:0,0:0,0 chr4 11253 . G C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:25,25:0,0 58:0:0:0:0,0:6,6:52,52:0,0 chr4 11378 . T A,G . QSS_ref NT=het;QSS=53;QSS_NT=43;SGT=AT->GT;SOMATIC;TQSS=2;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:7:0:0:5,5:0,0:0,0:23,23 46:12:0:0:0,0:0,0:3,3:31,32 chr4 11410 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:5:0:0:1,1:28,28:0,0:0,0 49:5:0:0:0,0:43,43:1,1:0,0 chr4 11429 . A C,G . QSS_ref NT=het;QSS=27;QSS_NT=27;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:1:0:0:22,22:6,6:0,0:0,0 57:1:0:0:54,54:0,0:2,2:0,0 chr4 11472 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:1,1:0,0:40,40:0,0 62:0:0:0:2,2:0,0:60,60:0,0 chr4 11491 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:0,0:0,0:0,0:42,42 64:0:0:0:8,8:0,0:0,0:56,56 chr4 11528 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 43:0:0:0:0,0:0,0:12,12:31,31 59:0:0:0:13,13:0,0:0,0:46,46 chr4 11609 . G C,T . QSS_ref NT=het;QSS=140;QSS_NT=62;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:18,18:7,7 49:0:0:0:0,0:4,4:45,45:0,0 chr4 11642 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:29,29:0,0:0,0 48:0:0:0:0,0:45,45:0,0:3,3 chr4 11673 . G A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:2,2:0,0:23,23:0,0 49:0:0:0:0,0:11,11:38,38:0,0 chr4 11796 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:1,1:0,0:0,0:26,26 68:0:0:0:6,6:0,0:0,0:62,62 chr4 11829 . C A,G . QSS_ref NT=het;QSS=105;QSS_NT=21;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:4,4:31,31:0,0:0,0 55:0:0:0:0,0:47,47:8,8:0,0 chr4 11881 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:0,0:36,36:3,3:0,0 55:0:0:0:0,0:50,50:5,5:0,0 chr4 11928 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:1,1:0,0:27,27:0,0 55:0:0:0:0,0:0,0:55,55:0,0 chr4 11947 . C A,G . QSS_ref NT=het;QSS=92;QSS_NT=41;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:25,25:4,4:0,0 56:0:0:0:7,7:49,49:0,0:0,0 chr4 12033 . T A,G . QSS_ref NT=het;QSS=339;QSS_NT=46;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:9,9:0,0:0,0:29,29 45:0:0:0:0,0:0,0:12,12:33,33 chr4 12150 . T C,G . QSS_ref NT=het;QSS=33;QSS_NT=33;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:2,2:0,0:24,24 55:0:0:0:0,0:0,0:8,8:47,47 chr4 12182 . G A . QSS_ref NT=het;QSS=2;QSS_NT=2;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:26,26:2,2 58:0:0:0:5,5:0,0:53,53:0,0 chr4 12198 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:0,0:28,28 61:0:0:0:2,2:0,0:0,0:59,59 chr4 12216 . T A . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:2,2:0,0:28,28 63:0:0:0:1,1:0,0:0,0:62,62 chr4 12230 . A G,T . QSS_ref NT=het;QSS=78;QSS_NT=39;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:25,25:0,0:0,0:5,5 64:0:0:0:55,55:0,0:9,9:0,0 chr4 12314 . G C . QSS_ref NT=het;QSS=17;QSS_NT=14;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:26,26:2,2 57:0:0:0:0,0:5,5:52,52:0,0 chr4 12379 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:1,1:0,0:32,32:0,0 53:0:0:0:0,0:1,1:52,52:0,0 chr4 12383 . T A,C . QSS_ref NT=het;QSS=342;QSS_NT=59;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:10,10:0,0:0,0:23,23 54:0:0:0:0,0:10,10:0,0:44,44 chr4 12473 . A C,T . QSS_ref NT=het;QSS=220;QSS_NT=54;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:19,19:0,0:0,0:6,6 58:0:0:0:41,41:17,17:0,0:0,0 chr4 12599 . A G . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:32,32:1,1:0,0:0,0 52:0:0:0:51,51:0,0:1,1:0,0 chr4 12662 . C G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:27,27:1,1:0,0 58:0:0:0:0,0:56,56:2,2:0,0 chr4 12671 . G T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:25,25:1,1 56:0:0:0:0,0:0,0:56,56:0,0 chr4 12678 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:1,1:0,0:22,22:0,0 62:0:0:0:0,0:2,2:60,60:0,0 chr4 12689 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:1,1:0,0:23,23:0,0 63:0:0:0:2,2:0,0:61,61:0,0 chr4 12706 . G A . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:26,26:0,0 61:0:0:0:3,3:0,0:58,58:0,0 chr4 12800 . T C,G . QSS_ref NT=het;QSS=64;QSS_NT=56;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:6:0:0:0,0:10,10:0,0:24,24 49:9:0:0:0,0:0,0:2,2:38,38 chr4 12890 . G T . PASS NT=ref;QSS=35;QSS_NT=35;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:4:0:0:0,0:0,0:24,24:0,0 48:6:0:0:0,0:0,0:28,28:14,14 chr4 12961 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:2,2:23,23 63:0:0:0:0,0:0,0:8,8:55,55 chr4 12989 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:0,0:23,23 62:0:0:0:0,0:7,7:0,0:55,55 chr4 13029 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:26,26:5,5:0,0:0,0 63:0:0:0:60,60:3,3:0,0:0,0 chr4 13148 . T A,C . QSS_ref NT=het;QSS=216;QSS_NT=49;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:7,7:0,0:24,24 53:0:0:0:9,9:0,0:0,0:44,44 chr4 13295 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:0,0:35,35 67:0:0:0:0,0:1,1:0,0:66,66 chr4 13329 . T C . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:0,0:0,0:36,36 62:0:0:0:0,0:5,5:0,0:57,57 chr4 13349 . G A,C . QSS_ref NT=het;QSS=175;QSS_NT=43;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:8,8:29,29:0,0 63:0:0:0:6,6:0,0:57,57:0,0 chr4 13407 . A C,T . QSS_ref NT=het;QSS=168;QSS_NT=51;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:24,24:0,0:0,0:6,6 52:0:0:0:40,40:12,12:0,0:0,0 chr4 13574 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:34,34:1,1:0,0:0,0 63:0:0:0:60,60:0,0:0,0:3,3 chr4 13624 . T C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 43:0:0:0:0,0:0,0:6,6:37,37 54:0:0:0:0,0:11,11:0,0:43,43 chr4 13698 . A G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:28,28:0,0:0,0:3,3 50:0:0:0:48,48:0,0:2,2:0,0 chr4 13713 . G C,T . QSS_ref NT=het;QSS=335;QSS_NT=69;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:16,16:11,11 55:0:0:0:0,0:10,10:45,45:0,0 chr4 13805 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:28,28:0,0:2,2 54:0:0:0:0,0:49,49:0,0:5,5 chr4 13836 . G C . QSS_ref NT=het;QSS=4;QSS_NT=4;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:2,2:0,0:25,25:0,0 56:0:0:0:0,0:5,5:51,51:0,0 chr4 13871 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:27,27:3,3:0,0:0,0 51:0:0:0:45,45:6,6:0,0:0,0 chr4 13922 . G A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:22,24:3,3 41:0:0:0:4,4:0,0:37,37:0,0 chr4 13992 . T C . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:0,0:23,28 47:0:0:0:0,0:8,8:0,0:39,39 chr4 14044 . A G,T . QSS_ref NT=het;QSS=90;QSS_NT=37;SGT=AT->AG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:16,24:0,0:0,0:4,4 56:0:0:0:51,51:0,0:5,5:0,0 chr4 14077 . A G,T . QSS_ref NT=het;QSS=50;QSS_NT=48;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:20,28:0,0:2,2:0,0 50:0:0:0:47,47:0,0:0,0:3,3 chr4 14106 . C A,G . QSS_ref NT=het;QSS=177;QSS_NT=40;SGT=AC->CG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:6,6:25,27:0,0:0,0 46:0:0:0:0,0:35,35:11,11:0,0 chr4 14251 . A C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:31,31:0,0:0,0:2,2 30:0:0:0:27,27:3,3:0,0:0,0 chr4 14325 . A G . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:32,32:0,0:0,0:1,1 48:0:0:0:45,45:0,0:3,3:0,0 chr4 14344 . A C,G . QSS_ref NT=het;QSS=179;QSS_NT=45;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:30,30:0,0:6,6:0,0 53:0:0:0:39,39:14,14:0,0:0,0 chr4 14414 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:0,0:0,0:22,24 43:0:0:0:0,0:1,1:0,0:42,42 chr4 14435 . A C,G . QSS_ref NT=het;QSS=85;QSS_NT=58;SGT=AG->AC;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:16,18:0,0:5,5:0,0 43:0:0:0:40,40:3,3:0,0:0,0 chr4 14466 . G A . QSS_ref NT=ref;QSS=11;QSS_NT=11;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 18:0:0:0:0,0:0,0:18,20:0,0 43:0:0:0:1,1:0,0:42,42:0,0 chr4 14496 . A C . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 15:0:0:0:15,20:0,0:0,0:0,0 40:0:0:0:38,38:2,2:0,0:0,0 chr4 14607 . A T . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:26,26:0,0:1,1:0,0 58:0:0:0:56,56:0,0:0,0:2,2 chr4 14642 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:32,32:0,0 60:0:0:0:3,3:0,0:57,57:0,0 chr4 14745 . A G,T . QSS_ref NT=het;QSS=336;QSS_NT=67;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:16,16:0,0:10,10:0,0 52:0:0:0:42,42:0,0:0,0:10,10 chr4 14844 . A C,T . QSS_ref NT=het;QSS=96;QSS_NT=28;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:31,31:0,0:0,0:4,4 39:0:0:0:34,34:5,5:0,0:0,0 chr4 14867 . T . . QSS_ref NT=het;QSS=2;QSS_NT=1;SGT=TT->TT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:2,2:0,0:28,28 41:0:0:0:0,0:0,0:2,2:39,39 chr4 14907 . C A . QSS_ref NT=het;QSS=6;QSS_NT=6;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:23,23:2,2:0,0 52:0:0:0:4,4:48,48:0,0:0,0 chr4 14940 . G C,T . QSS_ref NT=het;QSS=110;QSS_NT=55;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:0,0:18,18:4,4 54:0:0:0:0,0:10,10:44,44:0,0 chr4 14994 . C T . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:22,22:0,0:0,0 61:0:0:0:0,0:56,56:0,0:5,5 chr4 15010 . T C,G . QSS_ref NT=het;QSS=55;QSS_NT=41;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:3,3:26,26 59:0:0:0:0,0:5,5:0,0:54,54 chr4 15056 . G T . PASS NT=ref;QSS=15;QSS_NT=15;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:27,27:0,0 53:0:0:0:0,0:0,0:50,50:3,3 chr4 15099 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:0,0:32,32 32:0:0:0:0,0:0,0:2,2:30,30 chr4 15206 . T G . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:0,0:30,30 58:0:0:0:0,0:0,0:2,2:56,56 chr4 15224 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:1,1:26,26:0,0 60:0:0:0:0,0:1,1:59,59:0,0 chr4 15256 . G T . PASS NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:30,30:0,0 49:0:0:0:0,0:0,0:45,45:4,4 chr4 15320 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:0,0:25,25 43:0:0:0:1,1:0,0:0,0:42,42 chr4 15326 . T G . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:0,0:27,27 41:0:0:0:0,0:0,0:1,1:40,40 chr4 15333 . A C,T . QSS_ref NT=het;QSS=4;QSS_NT=4;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:25,25:0,0:0,0:2,2 43:0:0:0:38,38:5,5:0,0:0,0 chr4 15379 . C A,T . QSS_ref NT=het;QSS=467;QSS_NT=71;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:14,14:0,0:11,11 51:0:0:0:12,12:39,39:0,0:0,0 chr4 15627 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:30,30:0,0:0,0:3,3 44:0:0:0:41,41:0,0:0,0:3,3 chr4 15645 . T G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:0,0:33,33 50:0:0:0:0,0:0,0:4,4:46,46 chr4 15713 . T A,C . QSS_ref NT=het;QSS=291;QSS_NT=56;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:8,8:0,0:0,0:24,24 53:0:0:0:0,0:11,11:0,0:42,42 chr4 15792 . T A,G . QSS_ref NT=het;QSS=609;QSS_NT=69;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:15,15:0,0:0,0:11,11 39:0:0:0:0,0:0,0:18,18:21,21 chr4 15922 . G A . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:25,25:0,0 48:0:0:0:2,2:0,0:46,46:0,0 chr4 15982 . A G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:25,25:0,0:0,0:0,0 52:0:0:0:50,50:0,0:2,2:0,0 chr4 15998 . G A . QSS_ref NT=het;QSS=6;QSS_NT=6;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:23,23:2,2 50:0:0:0:2,2:0,0:48,48:0,0 chr4 16010 . T A,G . QSS_ref NT=het;QSS=245;QSS_NT=58;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:6,6:0,0:0,0:17,17 53:0:0:0:0,0:0,0:18,18:35,35 chr4 16067 . A G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:25,25:0,0:0,0:1,1 47:0:0:0:46,46:0,0:1,1:0,0 chr4 16106 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:23,23:8,8:0,0:0,0 49:0:0:0:40,40:9,9:0,0:0,0 chr4 16151 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:3,3:0,0:22,22 53:0:0:0:0,0:0,0:0,0:53,53 chr4 16158 . A G . QSS_ref NT=ref;QSS=12;QSS_NT=12;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:21,21:0,0:0,0:0,0 52:0:0:0:51,51:0,0:1,1:0,0 chr4 16179 . G A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:17,17:6,6 63:0:0:0:12,12:0,0:51,51:0,0 chr4 16274 . C G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:25,25:0,0:0,0 44:0:0:0:0,0:41,41:3,3:0,0 chr4 16306 . G T . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:23,23:0,0 43:0:0:0:0,0:0,0:41,41:2,2 chr4 16414 . G A,C . QSS_ref NT=het;QSS=5;QSS_NT=5;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:3,3:24,24:0,0 58:0:0:0:2,2:0,0:56,56:0,0 chr4 16424 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:17,17:0,0:5,5 56:0:0:0:7,7:49,49:0,0:0,0 chr4 16481 . A G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:24,24:0,0:0,0:0,0 61:0:0:0:53,53:0,0:8,8:0,0 chr4 16505 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:28,28:0,0:0,0 55:2:0:0:0,0:50,50:0,0:3,3 chr4 16547 . T A,G . QSS_ref NT=het;QSS=72;QSS_NT=30;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:1:0:0:0,0:0,0:4,4:27,27 53:11:0:0:10,10:0,0:0,0:32,32 chr4 16641 . C G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:3:0:0:0,0:19,20:6,6:0,0 39:1:0:0:0,0:36,36:0,0:2,2 chr4 16742 . A C,T . QSS_ref NT=het;QSS=209;QSS_NT=68;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:5:0:0:9,9:6,6:0,0:0,0 54:14:0:0:35,35:0,0:0,0:5,5 chr4 16767 . C A . BCNoise NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:9:0:0:0,0:21,22:0,0:0,0 53:22:0:0:5,5:26,26:0,0:0,0 chr4 16839 . C G . BCNoise NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:13:0:0:0,0:15,15:0,0:0,0 56:29:0:0:0,0:21,21:6,6:0,0 chr4 16970 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:0,0:1,1:37,37 37:0:0:0:0,0:0,0:0,0:37,37 chr4 16976 . T A,G . QSS_ref NT=het;QSS=207;QSS_NT=28;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:0,0:0,0:6,6:33,33 37:0:0:0:9,9:0,0:0,0:28,28 chr4 17017 . G C,T . QSS_ref NT=het;QSS=456;QSS_NT=66;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:20,20:12,12 32:0:0:0:0,0:16,16:16,16:0,0 chr4 17334 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:1,1:0,0:35,35 5:0:0:0:0,0:0,0:0,0:5,8 chr4 18550 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:5,5:32,32:0,0:0,0 7:0:0:0:0,0:7,8:0,0:0,0 chr4 18733 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:21,21:0,0:5,5:0,0 11:0:0:0:11,11:0,0:0,0:0,0 chr4 18989 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:8,8:28,28:0,0 13:0:0:0:0,0:0,0:13,13:0,0 chr4 19076 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:2,2:30,30:0,0:0,0 14:0:0:0:0,0:14,14:0,0:0,0 chr4 19090 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:32,32:0,0:2,2:0,0 12:0:0:0:12,13:0,0:0,0:0,0 chr4 19256 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:3,3:34,34 11:0:0:0:0,0:0,0:0,0:11,13 chr4 19687 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:21,22:0,0:5,5 13:0:0:0:0,0:13,14:0,0:0,0 chr4 21297 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:6,6:18,18:0,0:0,0 9:0:0:0:0,0:9,9:0,0:0,0 chr4 22036 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:6,6:0,0:0,0:34,34 10:0:0:0:0,0:0,0:0,0:10,15 chr4 22106 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 46:0:0:0:0,0:0,0:0,0:46,46 6:0:0:0:0,0:1,2:0,0:5,8 chr4 23185 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:32,32:0,0:6,6 0:0:0:0:0,0:0,0:0,0:0,0 chr4 23367 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:4,4:24,24:0,0:0,0 37:0:0:0:0,0:37,65:0,0:0,0 chr4 23574 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:30,30:3,3:0,0:0,0 58:0:0:0:58,60:0,0:0,0:0,0 chr4 23629 . C T . QSS_ref NT=het;QSS=3;QSS_NT=3;SGT=CT->CC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:23,23:0,0:8,8 58:0:0:0:0,0:58,59:0,0:0,0 chr4 23906 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:1,1:27,27 38:0:0:0:0,0:0,0:0,0:38,38 chr4 23912 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:2,2:0,0:25,25:0,0 41:0:0:0:0,0:0,0:41,41:0,0 chr4 23931 . T G . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:0,0:3,3:33,33 37:0:0:0:2,2:0,0:0,0:35,35 chr4 23960 . C A . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:34,34:1,1:0,0 37:0:0:0:1,1:36,36:0,0:0,0 chr4 24005 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:0,0:5,5:37,37:0,0 44:0:0:0:0,0:9,9:35,35:0,0 chr4 24133 . A G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:31,31:0,0:2,2:0,0 56:0:0:0:52,52:0,0:0,0:4,4 chr4 24153 . C T . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:1,1:34,34:0,0:0,0 56:0:0:0:0,0:54,54:0,0:2,2 chr4 24273 . T C . BCNoise NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:16:0:0:0,0:0,0:0,0:17,21 44:22:0:0:0,0:1,1:0,0:21,28 chr4 24508 . A T . PASS NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:1:0:0:26,26:0,0:0,0:0,0 43:7:0:0:34,34:0,0:0,0:2,2 chr4 24591 . G A . PASS NT=ref;QSS=32;QSS_NT=32;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:30,30:0,0 46:0:0:0:12,12:0,0:34,34:0,0 chr4 24682 . T A,G . QSS_ref NT=het;QSS=61;QSS_NT=26;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:3,3:0,0:0,0:26,26 46:0:0:0:0,0:0,0:7,7:39,39 chr4 24741 . G A,T . QSS_ref NT=het;QSS=178;QSS_NT=47;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:28,28:7,7 47:0:0:0:5,5:0,0:42,42:0,0 chr4 24791 . G C . PASS NT=ref;QSS=23;QSS_NT=23;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:37,37:0,0 46:0:0:0:0,0:5,5:41,41:0,0 chr4 24820 . A G,T . QSS_ref NT=het;QSS=50;QSS_NT=24;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:33,33:0,0:0,0:4,4 45:0:0:0:42,42:0,0:3,3:0,0 chr4 24841 . A G,T . QSS_ref NT=het;QSS=333;QSS_NT=59;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:21,21:0,0:0,0:9,9 44:0:0:0:33,33:0,0:11,11:0,0 chr4 24969 . C A,T . QSS_ref NT=het;QSS=19;QSS_NT=19;SGT=AC->CT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:11:0:0:4,4:18,19:0,0:0,0 44:13:0:0:0,0:29,30:0,0:2,2 chr4 25005 . C T . BCNoise;QSS_ref NT=ref;QSS=6;QSS_NT=6;SGT=CC->CT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:11:0:0:0,0:17,20:0,0:0,0 44:25:0:0:0,0:18,32:0,0:1,1 chr4 25086 . A C . QSS_ref NT=het;QSS=3;QSS_NT=3;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:1:0:0:26,26:0,0:0,0:2,2 52:0:0:0:48,48:4,4:0,0:0,0 chr4 25111 . T A . PASS NT=ref;QSS=16;QSS_NT=16;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:0,0:30,30 56:0:0:0:1,1:0,0:0,0:55,55 chr4 25122 . C A,G . QSS_ref NT=het;QSS=10;QSS_NT=10;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:2,2:30,30:0,0:0,0 59:0:0:0:0,0:56,56:3,3:0,0 chr4 25288 . G A,T . QSS_ref NT=het;QSS=129;QSS_NT=35;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:27,27:5,5 42:0:0:0:8,8:0,0:34,34:0,0 chr4 25363 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:31,31:5,5:0,0 47:0:0:0:0,0:46,46:1,1:0,0 chr4 25378 . T A . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:0,0:29,29 45:0:0:0:1,1:0,0:0,0:44,44 chr4 25387 . C T . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:27,27:1,1:0,0 58:0:0:0:0,0:55,55:0,0:3,3 chr4 25422 . G A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:22,22:3,3 58:0:0:0:14,14:0,0:44,44:0,0 chr4 25517 . C A,G . QSS_ref NT=het;QSS=21;QSS_NT=21;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:2,2:23,23:0,0:0,0 56:0:0:0:0,0:48,48:8,8:0,0 chr4 25552 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:27,27:0,0 51:0:0:0:0,0:0,0:50,50:1,1 chr4 25581 . A C,G . QSS_ref NT=het;QSS=63;QSS_NT=22;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:31,31:3,3:0,0:0,0 47:0:0:0:43,43:0,0:4,4:0,0 chr4 25601 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:0,0:30,30 50:0:0:0:0,0:1,1:0,0:49,49 chr4 25619 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:21,21:13,13:0,0 52:0:0:0:0,0:40,40:12,12:0,0 chr4 25854 . A G . QSS_ref NT=het;QSS=4;QSS_NT=2;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:32,32:2,2:0,0:0,0 52:0:0:0:48,48:0,0:4,4:0,0 chr4 25874 . A G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:33,33:0,0:0,0:2,2 52:0:0:0:48,48:0,0:4,4:0,0 chr4 25903 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:29,29:0,0:4,4:0,0 49:0:0:0:43,43:0,0:6,6:0,0 chr4 25924 . C . . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=CC->CC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:2,2:24,24:0,0:0,0 50:0:0:0:0,0:48,48:0,0:2,2 chr4 25938 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:0,0:26,26 44:0:0:0:1,1:0,0:0,0:43,43 chr4 25985 . C G,T . QSS_ref NT=het;QSS=115;QSS_NT=47;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:21,21:0,0:5,5 44:0:0:0:0,0:39,39:5,5:0,0 chr4 26065 . T A,C . QSS_ref NT=het;QSS=40;QSS_NT=40;SGT=AT->CT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:7:0:0:3,3:0,0:0,0:10,14 54:11:0:0:0,0:2,2:0,0:41,42 chr4 26090 . A C,T . QSS_ref;BCNoise NT=het;QSS=3;QSS_NT=3;SGT=AT->AC;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:9:0:0:9,14:0,0:0,0:5,7 48:23:0:0:24,32:1,1:0,0:0,0 chr4 26140 . G A . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:3:0:0:0,0:0,0:23,24:0,0 49:5:0:0:3,3:0,0:41,41:0,0 chr4 26156 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:3:0:0:0,0:26,26:0,0:0,0 47:2:0:0:0,0:41,41:0,0:4,4 chr4 26186 . A G . PASS NT=ref;QSS=17;QSS_NT=17;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:26,26:0,0:0,0:0,0 50:0:0:0:43,43:0,0:7,7:0,0 chr4 26278 . G C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:24,24:2,2 48:0:0:0:0,0:10,10:38,38:0,0 chr4 26354 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:4:0:0:15,15:0,0:0,0:4,4 61:5:0:0:46,46:0,0:0,0:10,10 chr4 26388 . G T . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:10:0:0:0,0:0,0:17,17:0,0 57:16:0:0:0,0:0,0:24,26:17,17 chr4 26405 . C A . BCNoise;QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:17:0:0:0,0:9,16:0,0:0,0 55:28:0:0:0,0:26,33:0,0:1,2 chr4 26439 . C A,T . QSS_ref NT=het;QSS=404;QSS_NT=71;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:3:0:0:10,10:13,13:0,0:0,0 45:7:0:0:0,0:17,17:0,0:21,22 chr4 26543 . T G . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:0,0:0,0:21,25 60:0:0:0:0,0:0,0:1,1:59,59 chr4 26641 . A G . QSS_ref;BCNoise NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:12:0:0:19,19:0,0:0,0:0,0 58:27:0:0:30,41:0,0:1,1:0,0 chr4 26998 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:7,7:0,0:0,0:23,23 42:0:0:0:8,8:0,0:0,0:34,34 chr4 27073 . T C,G . QSS_ref NT=het;QSS=109;QSS_NT=33;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:4,4:29,29 51:0:0:0:0,0:6,6:0,0:45,45 chr4 27117 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:2,2:28,28:0,0:0,0 51:0:0:0:0,0:50,50:1,1:0,0 chr4 27158 . T C,G . QSS_ref NT=het;QSS=14;QSS_NT=14;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:7,7:18,18 39:0:0:0:0,0:1,1:0,0:38,38 chr4 27230 . G A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:2,2:0,0:31,31:0,0 39:0:0:0:0,0:6,6:33,33:0,0 chr4 27346 . G A,T . QSS_ref NT=het;QSS=17;QSS_NT=16;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:0,0:0,0:36,36:5,5 56:0:0:0:2,2:0,0:54,54:0,0 chr4 27359 . T A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:0,0:0,0:38,38 55:0:0:0:2,2:0,0:0,0:53,53 chr4 27368 . A C . QSS_ref NT=het;QSS=2;QSS_NT=2;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:29,29:4,4:0,0:0,0 52:0:0:0:50,50:0,0:0,0:2,2 chr4 27422 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:2,2:0,0:0,0:25,25 51:0:0:0:0,0:0,0:0,0:51,51 chr4 27437 . C T . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:24,24:1,1:0,0 47:0:0:0:0,0:44,44:0,0:3,3 chr4 27475 . A G,T . QSS_ref NT=het;QSS=155;QSS_NT=43;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:23,23:0,0:0,0:5,5 44:0:0:0:38,38:0,0:6,6:0,0 chr4 27528 . A T . PASS NT=ref;QSS=15;QSS_NT=15;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:26,26:0,0:0,0:0,0 40:0:0:0:39,39:0,0:0,0:1,1 chr4 27547 . T A,G . QSS_ref NT=het;QSS=224;QSS_NT=59;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:9,9:19,19 40:0:0:0:6,6:0,0:0,0:34,34 chr4 27657 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:1,1:28,28:0,0 62:0:0:0:4,4:0,0:58,58:0,0 chr4 27672 . T A,C . QSS_ref NT=het;QSS=296;QSS_NT=58;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:8,8:0,0:0,0:23,23 59:0:0:0:0,0:17,17:0,0:42,42 chr4 27774 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:33,33:0,0:1,1:0,0 48:0:0:0:45,45:3,3:0,0:0,0 chr4 27785 . G A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:2,2:0,0:36,36:0,0 49:0:0:0:5,5:0,0:44,44:0,0 chr4 27847 . T G . PASS NT=ref;QSS=20;QSS_NT=20;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:0,0:1,1:0,0:38,38 44:0:0:0:0,0:0,0:4,4:40,40 chr4 27875 . C A,T . QSS_ref NT=het;QSS=375;QSS_NT=59;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:23,23:0,0:10,10 49:0:0:0:11,11:38,38:0,0:0,0 chr4 27926 . C T . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:31,31:0,0:0,0 51:0:0:0:0,0:48,48:0,0:3,3 chr4 27953 . G A,C . QSS_ref NT=het;QSS=69;QSS_NT=37;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:4,4:27,27:0,0 52:0:0:0:3,3:0,0:49,49:0,0 chr4 28060 . A C,T . QSS_ref NT=het;QSS=178;QSS_NT=58;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:22,22:6,6:0,0:0,0 45:0:0:0:35,35:0,0:0,0:10,10 chr4 28268 . C G,T . QSS_ref NT=het;QSS=182;QSS_NT=46;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:25,25:0,0:7,7 56:0:0:0:0,0:50,50:6,6:0,0 chr4 28372 . A G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:33,33:1,1:0,0:0,0 47:0:0:0:45,45:0,0:2,2:0,0 chr4 28397 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:8,8:0,0:29,29 51:0:0:0:14,14:0,0:0,0:37,37 chr4 28489 . G C,T . QSS_ref NT=het;QSS=41;QSS_NT=9;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:0,0:0,0:36,36:4,4 43:0:0:0:0,0:3,3:40,40:0,0 chr4 28546 . C G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:26,26:0,0:5,5 49:0:0:0:0,0:47,47:2,2:0,0 chr4 28630 . A G,T . QSS_ref NT=het;QSS=54;QSS_NT=27;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:29,29:0,0:3,3:0,0 45:0:0:0:40,40:0,0:0,0:5,5 chr4 28686 . C G . QSS_ref NT=ref;QSS=10;QSS_NT=10;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:3:0:0:0,0:34,34:0,0:1,1 54:9:0:0:0,0:44,44:1,1:0,0 chr4 28702 . C A,T . QSS_ref NT=het;QSS=75;QSS_NT=51;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:3:0:0:0,0:25,25:0,0:8,8 58:12:0:0:3,3:43,43:0,0:0,0 chr4 28761 . G A . QSS_ref;BCNoise NT=ref;QSS=11;QSS_NT=11;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:8:0:0:0,0:0,0:16,17:0,0 57:30:0:0:1,1:0,0:26,33:0,0 chr4 28988 . A C,G . QSS_ref NT=het;QSS=159;QSS_NT=40;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:25,25:0,0:5,5:0,0 58:0:0:0:48,48:10,10:0,0:0,0 chr4 29062 . C G,T . QSS_ref NT=het;QSS=142;QSS_NT=55;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:18,18:0,0:4,4 59:0:0:0:0,0:49,49:10,10:0,0 chr4 29101 . C A,G . QSS_ref NT=het;QSS=7;QSS_NT=7;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:21,21:2,2:0,0 48:0:0:0:2,2:46,46:0,0:0,0 chr4 29224 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:29,29:0,0:2,2 46:0:0:0:6,6:40,40:0,0:0,0 chr4 29264 . A T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:24,24:0,0:0,0:0,0 47:0:0:0:46,46:0,0:0,0:1,1 chr4 29273 . T G . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:1,1:0,0:23,23 46:0:0:0:0,0:0,0:3,3:43,43 chr4 29355 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:4,4:0,0:0,0:28,28 54:0:0:0:0,0:0,0:4,4:50,50 chr4 29393 . T C,G . QSS_ref NT=het;QSS=187;QSS_NT=39;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:6,6:27,27 49:0:0:0:0,0:7,7:0,0:42,42 chr4 29527 . A G,T . QSS_ref NT=het;QSS=20;QSS_NT=20;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:2:0:0:19,19:0,0:7,7:0,0 50:9:0:0:39,39:0,0:0,0:2,2 chr4 29684 . T A,G . QSS_ref NT=het;QSS=131;QSS_NT=30;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:5,5:0,0:0,0:29,29 61:0:0:0:0,0:0,0:12,12:49,49 chr4 29757 . T C . PASS NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:0,0:28,28 38:0:0:0:0,0:5,5:0,0:33,33 chr4 29867 . C G . PASS NT=ref;QSS=19;QSS_NT=19;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:36,36:0,0:0,0 59:0:0:0:0,0:58,58:1,1:0,0 chr4 29869 . C A,G . QSS_ref NT=het;QSS=591;QSS_NT=66;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:15,15:24,24:0,0:0,0 58:0:0:0:0,0:35,35:23,23:0,0 chr4 29973 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:25,25:0,0:0,0:0,0 64:0:0:0:37,37:0,0:0,0:27,27 chr4 30092 . G A,C . QSS_ref NT=het;QSS=3;QSS_NT=3;SGT=CG->AG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:6:0:0:0,0:2,2:21,22:0,0 45:12:0:0:2,2:0,0:31,33:0,0 chr4 30110 . G A . BCNoise;QSS_ref NT=ref;QSS=8;QSS_NT=8;SGT=GG->AG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:13:0:0:0,0:0,0:17,17:0,0 43:20:0:0:1,1:0,0:22,23:0,0 chr4 30153 . C A,T . QSS_ref NT=het;QSS=138;QSS_NT=41;SGT=AC->CT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:7:0:0:5,5:22,24:0,0:0,0 48:9:0:0:0,0:34,34:0,0:5,5 chr4 30226 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:5,5:0,0:0,0:18,27 61:0:0:0:0,0:5,5:0,0:56,56 chr4 30248 . T A,C . QSS_ref NT=het;QSS=114;QSS_NT=62;SGT=AT->CT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:11,11:0,0:0,0:15,22 62:0:0:0:0,0:3,3:0,0:59,59 chr4 30271 . C T . QSS_ref NT=conflict;QSS=3070;QSS_NT=0;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:25,30:0,0:0,0 55:0:0:0:0,0:48,48:0,0:7,7 chr4 30336 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:0,0:0,0:22,24 51:0:0:0:0,0:2,2:0,0:49,49 chr4 30382 . G T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:0,0:21,22:0,0 48:0:0:0:0,0:0,0:37,37:11,11 chr4 30480 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:27,27:0,0:0,0:0,0 52:0:0:0:51,51:0,0:1,1:0,0 chr4 30485 . A C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:22,22:4,4:0,0:0,0 52:0:0:0:49,49:0,0:0,0:3,3 chr4 30548 . A G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:25,25:0,0:0,0:3,3 54:0:0:0:48,48:0,0:6,6:0,0 chr4 30576 . A C,G . QSS_ref NT=het;QSS=4;QSS_NT=4;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:25,25:0,0:2,2:0,0 56:0:0:0:54,54:2,2:0,0:0,0 chr4 30594 . C G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:30,30:0,0:0,0 56:0:0:0:0,0:55,55:1,1:0,0 chr4 30626 . G C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:30,30:3,3 56:0:0:0:0,0:6,6:50,50:0,0 chr4 30685 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 16:0:0:0:11,19:5,5:0,0:0,0 48:0:0:0:43,43:0,0:5,5:0,0 chr4 30805 . C A,G . QSS_ref NT=het;QSS=250;QSS_NT=61;SGT=AC->CG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:8,8:16,18:0,0:0,0 47:0:0:0:0,0:40,40:7,7:0,0 chr4 30956 . A C,G . QSS_ref NT=het;QSS=213;QSS_NT=57;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:2:0:0:20,20:6,6:0,0:0,0 52:3:0:0:41,41:0,0:8,8:0,0 chr4 31013 . T G . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:3:0:0:0,0:0,0:0,0:20,20 39:13:0:0:0,0:0,0:1,1:25,25 chr4 31014 . G A . BCNoise NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:5:0:0:0,0:0,0:17,19:0,0 40:18:0:0:4,4:0,0:18,22:0,0 chr4 31156 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:0,0:20,20:2,2 67:0:0:0:0,0:0,0:61,61:6,6 chr4 31188 . C G,T . QSS_ref NT=het;QSS=29;QSS_NT=29;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:20,20:2,2:0,0 59:0:0:0:0,0:55,55:0,0:4,4 chr4 31227 . A G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:3:0:0:23,23:0,0:0,0:1,1 48:4:0:0:43,43:0,0:1,1:0,0 chr4 31229 . G A,T . QSS_ref NT=het;QSS=32;QSS_NT=30;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:3:0:0:0,0:0,0:21,21:3,3 46:4:0:0:6,6:0,0:36,36:0,0 chr4 31283 . G T . QSS_ref;BCNoise NT=ref;QSS=3;QSS_NT=3;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:10:0:0:0,0:0,0:21,23:0,0 45:18:0:0:0,0:0,0:25,34:2,3 chr4 31367 . T A,C . QSS_ref NT=het;QSS=54;QSS_NT=53;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:1:0:0:8,8:0,0:0,0:19,19 50:8:0:0:0,0:2,2:0,0:40,40 chr4 31425 . G A,C . QSS_ref NT=het;QSS=57;QSS_NT=46;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:3,3:0,0:20,20:0,0 59:0:0:0:0,0:7,7:52,52:0,0 chr4 31545 . G A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:6:0:0:2,2:0,0:19,19:0,0 49:3:0:0:0,0:2,2:44,44:0,0 chr4 31554 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:6:0:0:0,0:0,0:0,0:21,21 48:3:0:0:0,0:0,0:6,6:39,39 chr4 31633 . A C . BCNoise NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:13:0:0:14,17:0,0:0,0:0,0 57:27:0:0:28,39:2,2:0,0:0,0 chr4 31644 . T A,C . QSS_ref NT=het;QSS=195;QSS_NT=58;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:7:0:0:0,0:6,6:0,0:17,17 59:18:0:0:21,23:0,0:0,0:20,20 chr4 31746 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:26,26:5,5 54:0:0:0:0,0:0,0:53,53:1,1 chr4 31761 . T A,C . QSS_ref NT=het;QSS=174;QSS_NT=54;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:6,6:0,0:0,0:19,19 53:0:0:0:0,0:8,8:0,0:45,45 chr4 31857 . C A,G . QSS_ref NT=het;QSS=106;QSS_NT=35;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:27,27:5,5:0,0 45:0:0:0:4,4:41,41:0,0:0,0 chr4 31886 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:32,32:0,0:0,0 43:0:0:0:0,0:30,30:0,0:13,13 chr4 31987 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:2:0:0:0,0:27,27:0,0:0,0 63:4:0:0:0,0:58,58:0,0:1,1 chr4 32027 . C A . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:4:0:0:6,6:20,20:0,0:0,0 67:13:0:0:0,0:54,55:0,0:0,0 chr4 32033 . A C . QSS_ref NT=ref;QSS=13;QSS_NT=13;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:4:0:0:23,23:0,0:0,0:0,0 67:15:0:0:49,50:3,3:0,0:0,0 chr4 32072 . C T . QSS_ref;BCNoise NT=ref;QSS=6;QSS_NT=6;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:12:0:0:0,0:15,16:0,0:0,0 67:38:0:0:0,0:28,34:0,0:1,1 chr4 32096 . A C,G . QSS_ref NT=het;QSS=94;QSS_NT=58;SGT=AG->AC;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:5:0:0:12,13:0,0:4,4:0,0 62:20:0:0:31,32:11,13:0,0:0,0 chr4 32192 . A C,T . QSS_ref NT=het;QSS=33;QSS_NT=22;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:30,30:0,0:0,0:4,4 43:0:0:0:40,40:3,3:0,0:0,0 chr4 32252 . C G,T . QSS_ref NT=het;QSS=147;QSS_NT=49;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:3:0:0:0,0:20,20:0,0:5,5 49:5:0:0:0,0:38,38:6,6:0,0 chr4 32353 . T A,G . QSS_ref NT=het;QSS=189;QSS_NT=52;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:3:0:0:0,0:0,0:6,6:23,23 52:5:0:0:12,12:0,0:0,0:35,35 chr4 32500 . A G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:26,26:0,0:1,1:0,0 51:2:0:0:49,49:0,0:0,0:0,0 chr4 32503 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:27,27:0,0:0,0 52:3:0:0:0,0:48,48:0,0:1,1 chr4 32519 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:2,2:27,27:0,0 51:3:0:0:2,2:0,0:46,46:0,0 chr4 32531 . G T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:25,25:0,0 53:6:0:0:0,0:0,0:44,44:3,3 chr4 32558 . G A . PASS NT=ref;QSS=21;QSS_NT=21;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:4:0:0:0,0:0,0:26,26:1,1 46:9:0:0:6,6:0,0:31,31:0,0 chr4 32679 . G A . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:30,30:0,0 35:1:0:0:4,4:0,0:30,30:0,0 chr4 32721 . A G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:27,27:0,0:7,7:0,0 47:0:0:0:38,38:0,0:0,0:9,9 chr4 32910 . G T . PASS NT=ref;QSS=16;QSS_NT=16;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:29,29:0,0 42:0:0:0:0,0:0,0:41,41:1,1 chr4 33002 . C A . QSS_ref NT=ref;QSS=6;QSS_NT=6;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:32,32:0,0:1,1 52:0:0:0:1,1:51,51:0,0:0,0 chr4 33016 . A G,T . QSS_ref NT=het;QSS=7;QSS_NT=4;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:34,34:0,0:0,0:3,3 57:0:0:0:47,47:0,0:10,10:0,0 chr4 33153 . C T . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:1,1:41,41:0,0:0,0 48:0:0:0:0,0:45,45:0,0:3,3 chr4 33160 . T A,C . QSS_ref NT=het;QSS=38;QSS_NT=3;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:3,3:0,0:0,0:37,37 49:0:0:0:0,0:5,5:0,0:44,44 chr4 33203 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:33,33:0,0:5,5:0,0 50:0:0:0:46,46:0,0:4,4:0,0 chr4 33225 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:0,0:34,34 50:0:0:0:0,0:0,0:4,4:46,46 chr4 33269 . A C,G . QSS_ref NT=het;QSS=60;QSS_NT=47;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:19,19:4,4:0,0:0,0 56:0:0:0:53,53:0,0:3,3:0,0 chr4 33315 . C A,T . QSS_ref NT=het;QSS=93;QSS_NT=49;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:4,4:18,18:0,0:0,0 55:0:0:0:0,0:51,51:0,0:4,4 chr4 33325 . G T . QSS_ref NT=ref;QSS=13;QSS_NT=13;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:23,23:0,0 55:0:0:0:0,0:0,0:52,52:3,3 chr4 33338 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:24,24:0,0:0,0:0,0 53:0:0:0:48,48:0,0:5,5:0,0 chr4 33369 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:22,22:0,0:0,0:0,0 48:0:0:0:45,45:0,0:0,0:3,3 chr4 33397 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:25,25:0,0:0,0:0,0 43:0:0:0:38,38:0,0:0,0:5,5 chr4 33480 . T C . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:0,0:28,28 47:0:0:0:0,0:7,7:0,0:40,40 chr4 33571 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:0,0:34,34 53:0:0:0:8,8:0,0:0,0:45,45 chr4 33606 . A G,T . QSS_ref NT=het;QSS=73;QSS_NT=43;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:26,26:0,0:0,0:5,5 50:0:0:0:47,47:0,0:3,3:0,0 chr4 33636 . C G . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:30,30:0,0:0,0 51:0:0:0:0,0:49,49:2,2:0,0 chr4 33664 . G T . QSS_ref NT=het;QSS=27;QSS_NT=27;SGT=GT->GG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:17,17:12,12 50:0:0:0:0,0:0,0:50,50:0,0 chr4 33665 . T A . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:0,0:28,28 50:0:0:0:4,4:0,0:0,0:46,46 chr4 33790 . A T . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:25,25:0,0:0,0:0,0 54:0:0:0:52,52:0,0:0,0:2,2 chr4 33873 . A C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:24,24:0,0:0,0:0,0 55:0:0:0:54,54:1,1:0,0:0,0 chr4 33903 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:1,1:25,25:0,0 47:0:0:0:0,0:0,0:40,40:7,7 chr4 33965 . G C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:24,24:0,0 40:0:0:0:0,0:1,1:39,39:0,0 chr4 34026 . C G . PASS NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:1:0:0:0,0:25,25:0,0:0,0 50:5:0:0:0,0:39,39:6,6:0,0 chr4 34081 . C A,G . QSS_ref;BCNoise NT=het;QSS=3070;QSS_NT=3070;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:7:0:0:0,0:14,15:2,2:0,0 61:28:0:0:9,9:24,27:0,0:0,0 chr4 34177 . A C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:1:0:0:28,28:0,0:0,0:0,0 55:0:0:0:51,51:4,4:0,0:0,0 chr4 34201 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:0,0:25,25 51:0:0:0:0,0:0,0:6,6:45,45 chr4 34264 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:22,22:0,0:1,1 44:0:0:0:0,0:41,41:0,0:3,3 chr4 34296 . G T . QSS_ref NT=het;QSS=4;QSS_NT=2;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:2,2:0,0:31,31:0,0 43:0:0:0:0,0:0,0:40,40:3,3 chr4 34320 . G A . QSS_ref NT=ref;QSS=6;QSS_NT=6;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:1:0:0:0,0:1,1:24,24:0,0 53:8:0:0:1,1:0,0:44,44:0,0 chr4 34333 . A C,G . QSS_ref NT=het;QSS=208;QSS_NT=56;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:2:0:0:20,20:7,7:0,0:0,0 46:8:0:0:32,32:0,0:6,6:0,0 chr4 34421 . G A,T . QSS_ref NT=het;QSS=282;QSS_NT=66;SGT=AG->GT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:8:0:0:8,8:0,0:13,14:0,0 46:10:0:0:0,0:0,0:25,25:11,11 chr4 34492 . C T . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:26,26:0,0:0,0 56:0:0:0:0,0:55,55:0,0:1,1 chr4 34542 . C G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:26,26:6,6:0,0 48:0:0:0:0,0:42,42:0,0:6,6 chr4 34608 . T A,C . QSS_ref NT=het;QSS=124;QSS_NT=66;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:12,12:0,0:0,0:20,20 41:0:0:0:0,0:3,3:0,0:38,38 chr4 34741 . C T . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:35,35:0,0:0,0 42:0:0:0:0,0:39,39:0,0:3,3 chr4 34776 . A C,G . QSS_ref NT=het;QSS=155;QSS_NT=47;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:23,23:6,6:0,0:0,0 55:0:0:0:50,50:0,0:5,5:0,0 chr4 34856 . A G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:25,25:0,0:0,0:2,2 46:0:0:0:42,42:0,0:4,4:0,0 chr4 34917 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:24,24:0,0:0,0 46:0:0:0:0,0:42,42:4,4:0,0 chr4 34984 . G A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:6,6:21,21:0,0 42:0:0:0:7,7:0,0:35,35:0,0 chr4 35010 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:22,22:0,0:5,5:0,0 43:0:0:0:38,38:5,5:0,0:0,0 chr4 35128 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:6,6:0,0:21,21 46:0:0:0:0,0:1,1:0,0:45,45 chr4 35198 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:32,32:5,5:0,0:0,0 43:0:0:0:37,37:6,6:0,0:0,0 chr4 35238 . T A,C . QSS_ref NT=het;QSS=111;QSS_NT=44;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:5,5:0,0:0,0:26,26 49:0:0:0:0,0:10,10:0,0:39,39 chr4 35383 . G T . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:0,0:22,22:0,0 51:0:0:0:0,0:0,0:50,50:1,1 chr4 35385 . C A,T . QSS_ref NT=het;QSS=137;QSS_NT=47;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:4,4:19,19:0,0:0,0 49:0:0:0:0,0:34,34:0,0:15,15 chr4 35492 . T C . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:0,0:26,26 47:0:0:0:0,0:1,1:0,0:46,46 chr4 35494 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:25,25:0,0:1,1 46:0:0:0:0,0:44,44:0,0:2,2 chr4 35529 . A C . PASS NT=ref;QSS=16;QSS_NT=16;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:29,29:0,0:0,0:0,0 48:0:0:0:46,46:2,2:0,0:0,0 chr4 35587 . C . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CC->CC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:2:0:0:0,0:20,20:0,0:0,0 43:3:0:0:0,0:38,38:0,0:2,2 chr4 35653 . C G . BCNoise;QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:14:0:0:0,0:9,9:0,0:0,0 37:17:0:0:0,0:19,19:1,1:0,0 chr4 35654 . T C . BCNoise;QSS_ref NT=ref;QSS=8;QSS_NT=8;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:15:0:0:0,0:0,0:0,0:9,9 36:17:0:0:0,0:1,1:0,0:18,18 chr4 35671 . G A,T . QSS_ref NT=het;QSS=126;QSS_NT=56;SGT=GT->AG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:8:0:0:0,0:0,0:18,19:5,5 44:10:0:0:9,10:0,0:25,25:0,0 chr4 35788 . C A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:4:0:0:4,4:19,19:0,0:0,0 58:10:0:0:0,0:38,38:10,10:0,0 chr4 35859 . G T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:6:0:0:0,0:0,0:22,22:0,0 46:18:0:0:0,0:0,0:24,24:4,5 chr4 35921 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:1:0:0:5,5:0,0:0,0:27,27 37:1:0:0:0,0:0,0:7,7:29,29 chr4 36005 . A C,G . QSS_ref NT=het;QSS=223;QSS_NT=45;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:29,29:0,0:7,7:0,0 33:0:0:0:27,27:6,6:0,0:0,0 chr4 36182 . G A,T . QSS_ref NT=het;QSS=18;QSS_NT=15;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:2,2:0,0:30,30:0,0 43:0:0:0:0,0:0,0:36,36:7,7 chr4 36220 . A C,G . QSS_ref NT=het;QSS=75;QSS_NT=30;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:30,30:0,0:4,4:0,0 43:0:0:0:36,36:7,7:0,0:0,0 chr4 36334 . G C,T . QSS_ref NT=het;QSS=297;QSS_NT=69;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:17,17:12,12 41:0:0:0:0,0:7,7:34,34:0,0 chr4 36385 . C A . PASS NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:0,0:39,39:0,0:0,0 47:0:0:0:4,4:43,43:0,0:0,0 chr4 36429 . A G . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:5:0:0:33,33:0,0:0,0:0,0 44:2:0:0:29,29:0,0:13,13:0,0 chr4 36520 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:9:0:0:0,0:0,0:0,0:25,28 54:21:0:0:0,0:0,0:2,3:31,32 chr4 36566 . G C . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:2:0:0:0,0:0,0:28,28:1,1 52:4:0:0:0,0:3,3:45,45:0,0 chr4 36582 . A G . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:2:0:0:25,25:0,0:0,0:0,0 51:1:0:0:49,49:0,0:1,1:0,0 chr4 36627 . C G,T . QSS_ref NT=het;QSS=133;QSS_NT=45;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:20,20:4,4:0,0 52:0:0:0:0,0:39,39:0,0:13,13 chr4 36701 . A C,G . QSS_ref NT=het;QSS=116;QSS_NT=50;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:18,18:4,4:0,0:0,0 50:0:0:0:42,42:0,0:8,8:0,0 chr4 36745 . A C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:20,20:0,0:0,0:5,5 55:0:0:0:46,46:9,9:0,0:0,0 chr4 36834 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:25,25:5,5:0,0:0,0 62:0:0:0:53,53:9,9:0,0:0,0 chr4 36909 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:30,30:0,0:2,2:0,0 49:0:0:0:48,48:0,0:1,1:0,0 chr4 36939 . C A . PASS NT=ref;QSS=16;QSS_NT=16;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:29,32:0,0:0,0 43:0:0:0:2,2:41,41:0,0:0,0 chr4 36990 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 19:0:0:0:0,0:19,23:0,0:0,0 47:0:0:0:4,4:43,43:0,0:0,0 chr4 37054 . A C,G . QSS_ref NT=het;QSS=104;QSS_NT=41;SGT=AC->AG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:24,25:4,4:0,0:0,0 50:0:0:0:42,42:0,0:8,8:0,0 chr4 37076 . A G . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:30,30:0,0:0,0:1,1 52:0:0:0:51,51:0,0:1,1:0,0 chr4 37123 . T C,G . QSS_ref NT=het;QSS=162;QSS_NT=51;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:5,5:0,0:22,22 49:0:0:0:0,0:0,0:8,8:41,41 chr4 37190 . T G . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:0,0:26,26 55:0:0:0:0,0:0,0:3,3:52,52 chr4 37205 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:2,2:0,0:0,0:25,25 54:0:0:0:0,0:6,6:0,0:48,48 chr4 37253 . G A,C . QSS_ref NT=het;QSS=148;QSS_NT=41;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:6,6:0,0:29,29:0,0 56:0:0:0:0,0:8,8:48,48:0,0 chr4 37302 . G C . PASS NT=ref;QSS=24;QSS_NT=24;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:0,0:0,0:42,42:0,0 45:0:0:0:0,0:5,5:40,40:0,0 chr4 37381 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:0,0:0,0:12,12:27,27 32:0:0:0:0,0:0,0:0,0:32,32 chr4 37383 . C A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:0,0:40,40:0,0:0,0 32:0:0:0:4,4:28,28:0,0:0,0 chr4 37486 . C . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CC->CC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 11:0:0:0:0,0:11,15:0,0:0,0 46:0:0:0:0,0:44,44:0,0:2,2 chr4 37514 . C T . QSS_ref NT=ref;QSS=9;QSS_NT=9;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 14:0:0:0:0,0:14,18:0,0:0,0 51:0:0:0:0,0:49,49:0,0:2,2 chr4 37560 . A G,T . QSS_ref NT=het;QSS=88;QSS_NT=41;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:23,23:0,0:0,0:4,4 54:0:0:0:42,42:0,0:12,12:0,0 chr4 37718 . A G . PASS NT=ref;QSS=21;QSS_NT=21;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:40,40:0,0:0,0:0,0 42:0:0:0:40,40:0,0:2,2:0,0 chr4 37748 . C T . QSS_ref NT=het;QSS=3;QSS_NT=3;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:32,32:0,0:4,4 42:0:0:0:2,2:40,40:0,0:0,0 chr4 37831 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:10:0:0:1,1:0,0:0,0:24,24 63:12:0:0:0,0:0,0:3,3:48,48 chr4 37851 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:11:0:0:0,0:0,0:1,1:22,22 67:15:0:0:0,0:0,0:0,0:52,52 chr4 37873 . A . . QSS_ref;BCNoise NT=ref;QSS=1;QSS_NT=1;SGT=AA->AA;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:21:0:0:16,21:0,0:0,0:0,0 61:23:0:0:36,45:0,0:2,2:0,1 chr4 37896 . G A . QSS_ref NT=het;QSS=7;QSS_NT=7;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:8:0:0:0,0:0,0:23,23:2,2 63:6:0:0:3,3:0,0:54,55:0,0 chr4 37936 . T C . PASS NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:3:0:0:0,0:0,0:0,0:29,29 76:3:0:0:0,0:1,1:0,0:72,73 chr4 37982 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:2,2:0,0:0,0:23,23 61:0:0:0:0,0:9,9:0,0:52,63 chr4 38018 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:23,23:0,0:4,4:0,0 42:0:0:0:40,55:0,0:2,2:0,0 chr4 40495 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:30,30:0,0:0,0:2,2 0:0:0:0:0,0:0,0:0,0:0,0 chr4 41382 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 18:0:0:0:0,0:15,26:0,0:3,3 57:0:0:0:0,0:57,80:0,0:0,0 chr4 41507 . T G . QSS_ref NT=conflict;QSS=3070;QSS_NT=0;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 12:0:0:0:0,0:0,0:1,1:11,22 72:0:0:0:0,0:0,0:0,0:72,76 chr4 41516 . A T . QSS_ref NT=conflict;QSS=3070;QSS_NT=0;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 14:0:0:0:13,23:0,0:0,0:1,1 76:0:0:0:76,78:0,0:0,0:0,0 chr4 41559 . A C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:25,38:1,1:0,0:0,0 86:0:0:0:86,86:0,0:0,0:0,0 chr4 41625 . G A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:0,0:13,30:9,9 68:0:0:0:1,1:0,0:67,67:0,0 chr4 41892 . A T . QSS_ref NT=ref;QSS=1;QSS_NT=0;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 0:0:0:0:0,15:0,0:0,0:0,0 38:0:0:0:31,31:0,0:0,0:7,7 chr4 41913 . G A . QSS_ref NT=ref;QSS=4;QSS_NT=1;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 0:0:0:0:0,0:0,0:0,14:0,0 31:0:0:0:1,1:0,0:30,30:0,0 chr4 41927 . A G . QSS_ref NT=conflict;QSS=3070;QSS_NT=0;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 0:0:0:0:0,12:0,0:0,0:0,1 27:0:0:0:26,26:0,0:1,1:0,0 chr4 41964 . T A . QSS_ref NT=conflict;QSS=2;QSS_NT=0;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 0:0:0:0:0,0:0,0:0,1:0,11 27:0:0:0:3,3:0,0:0,0:24,24 chr5 374 . G T . QSS_ref NT=ref;QSS=10;QSS_NT=10;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 16:3:0:0:0,0:0,0:13,13:0,0 46:2:0:0:0,0:0,0:38,38:6,6 chr5 438 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 13:0:0:0:0,0:0,0:0,0:13,13 46:5:0:0:1,1:0,0:0,0:40,41 chr5 458 . C G . BCNoise;QSS_ref NT=ref;QSS=7;QSS_NT=7;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 15:8:0:0:0,0:7,7:0,0:0,0 48:22:0:0:0,0:25,25:1,1:0,0 chr5 489 . G C . BCNoise;QSS_ref NT=ref;QSS=8;QSS_NT=8;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 18:9:0:0:0,0:0,0:9,9:0,0 53:21:0:0:0,0:4,7:28,30:0,0 chr5 566 . G C . QSS_ref NT=ref;QSS=12;QSS_NT=12;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:1:0:0:0,0:0,0:20,25:0,0 47:0:0:0:0,0:2,2:45,45:0,0 chr5 620 . C T . QSS_ref NT=conflict;QSS=6;QSS_NT=0;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 10:1:0:0:0,2:9,13:0,0:0,0 39:4:0:0:0,0:27,27:0,0:8,8 chr5 697 . A G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:4:0:0:9,9:0,0:0,0:12,12 48:10:0:0:27,27:0,0:11,11:0,0 chr5 761 . G C . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:33,33:0,0 42:0:0:0:0,0:6,6:36,36:0,0 chr5 821 . C G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:31,31:0,0:0,0 45:0:0:0:0,0:43,43:2,2:0,0 chr5 850 . T G . QSS_ref NT=ref;QSS=3;QSS_NT=1;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:2,2:0,0:0,0:34,34 47:0:0:0:0,0:0,0:3,3:44,44 chr5 879 . T A,G . QSS_ref NT=het;QSS=305;QSS_NT=54;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:8,8:0,0:0,0:23,23 42:0:0:0:0,0:0,0:10,10:32,32 chr5 996 . T A,C . QSS_ref NT=het;QSS=20;QSS_NT=20;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:4:0:0:0,0:2,2:0,0:26,26 45:14:0:0:3,3:0,0:0,0:28,29 chr5 1114 . G A . BCNoise;QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:14:0:0:0,0:0,0:13,13:0,0 38:21:0:0:1,2:0,0:16,16:0,0 chr5 1148 . G T . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:7:0:0:0,0:0,0:15,16:0,0 44:6:0:0:0,0:0,0:29,29:9,10 chr5 1218 . A T . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:25,25:0,0:0,0:0,0 41:0:0:0:40,40:0,0:0,0:1,1 chr5 1236 . T A,C . QSS_ref NT=het;QSS=178;QSS_NT=45;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:2:0:0:0,0:5,5:0,0:22,22 39:2:0:0:11,11:0,0:0,0:26,26 chr5 1301 . A C,T . QSS_ref;BCNoise NT=het;QSS=117;QSS_NT=56;SGT=AC->AT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:12:0:0:13,14:4,4:0,0:0,0 41:11:0:0:25,25:0,0:0,0:5,5 chr5 1370 . G C . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:2:0:0:0,0:0,0:25,25:1,1 43:6:0:0:0,0:5,5:32,32:0,0 chr5 1407 . G A . PASS NT=ref;QSS=17;QSS_NT=17;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:31,31:0,0 43:1:0:0:1,1:0,0:41,41:0,0 chr5 1412 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:32,32:2,2:0,0:0,0 41:0:0:0:41,41:0,0:0,0:0,0 chr5 1413 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:34,34:0,0 42:0:0:0:0,0:1,1:41,41:0,0 chr5 1436 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:2:0:0:29,29:0,0:0,0:3,3 43:1:0:0:41,41:0,0:0,0:1,1 chr5 1458 . T C . PASS NT=ref;QSS=17;QSS_NT=17;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:5:0:0:0,0:0,0:0,0:30,30 44:6:0:0:0,0:1,1:0,0:37,37 chr5 1482 . A G . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:8:0:0:23,23:0,0:0,0:0,0 46:10:0:0:34,34:0,0:2,2:0,0 chr5 1526 . A T . BCNoise;QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:21:0:0:16,17:0,0:0,0:0,0 50:29:0:0:20,20:0,0:0,0:1,1 chr5 1558 . T A,C . QSS_ref NT=het;QSS=371;QSS_NT=66;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:5:0:0:0,0:10,10:0,0:16,17 42:12:0:0:11,11:0,0:0,0:19,19 chr5 1653 . A C . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:25,26:0,0:0,0:0,0 43:0:0:0:42,42:1,1:0,0:0,0 chr5 1669 . T G . PASS NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:0,0:30,31 45:0:0:0:0,0:0,0:1,1:44,44 chr5 1683 . G A,C . QSS_ref NT=het;QSS=40;QSS_NT=39;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:6,6:0,0:23,23:0,0 46:0:0:0:0,0:2,2:44,44:0,0 chr5 1785 . A G . QSS_ref NT=het;QSS=16;QSS_NT=10;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:28,28:2,2:0,0:0,0 55:0:0:0:50,50:0,0:5,5:0,0 chr5 1817 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:34,34:0,0 66:0:0:0:0,0:0,0:64,64:2,2 chr5 1894 . T A . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:0,0:29,29 46:0:0:0:1,1:0,0:0,0:45,45 chr5 1901 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:0,0:30,30 44:0:0:0:0,0:0,0:3,3:41,41 chr5 1918 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:29,29:0,0 36:0:0:0:3,3:0,0:33,33:0,0 chr5 1932 . A C . 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QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:28,28:0,0:0,0:0,0 59:0:0:0:58,58:1,1:0,0:0,0 chr5 2461 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:28,28:1,1:0,0:0,0 57:0:0:0:57,57:0,0:0,0:0,0 chr5 2472 . G A . QSS_ref NT=ref;QSS=13;QSS_NT=12;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:23,23:1,1 53:0:0:0:5,5:0,0:48,48:0,0 chr5 2494 . G C . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:0,0:20,20:1,1 56:0:0:0:0,0:2,2:54,54:0,0 chr5 2502 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:0,0:0,0:0,0:20,20 55:0:0:0:0,0:4,4:0,0:51,51 chr5 2540 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:2,2:0,0:27,27 54:0:0:0:3,3:0,0:0,0:51,51 chr5 2565 . G A,T . QSS_ref NT=het;QSS=227;QSS_NT=56;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:8,8:0,0:19,19:0,0 48:0:0:0:0,0:0,0:38,38:10,10 chr5 2708 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:29,29:2,2 53:0:0:0:0,0:0,0:53,53:0,0 chr5 2793 . A C,G . QSS_ref NT=het;QSS=39;QSS_NT=20;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:29,29:0,0:3,3:0,0 50:0:0:0:44,44:6,6:0,0:0,0 chr5 2844 . C G,T . QSS_ref NT=het;QSS=47;QSS_NT=32;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:26,26:4,4:0,0 54:2:0:0:0,0:40,40:0,0:12,12 chr5 2949 . A T . BCNoise;QSS_ref NT=het;QSS=3;QSS_NT=3;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:19:0:0:13,13:0,0:1,1:0,0 61:34:0:0:24,24:0,0:0,0:3,4 chr5 3018 . T A . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:4:0:0:0,0:0,0:0,0:24,24 47:9:0:0:1,1:0,0:0,0:37,37 chr5 3019 . A G . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:4:0:0:23,23:1,1:0,0:0,0 48:10:0:0:37,37:0,0:1,1:0,0 chr5 3035 . G T . PASS NT=ref;QSS=17;QSS_NT=17;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:4:0:0:0,0:0,0:29,29:0,0 44:6:0:0:0,0:0,0:36,36:2,2 chr5 3060 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:6:0:0:1,1:0,0:0,0:27,28 41:10:0:0:0,0:4,4:0,0:27,27 chr5 3098 . T C,G . BCNoise;QSS_ref NT=het;QSS=35;QSS_NT=35;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 19:0:21:0:0,0:3,3:0,0:16,16 21:9:19:0:0,0:0,0:2,2:10,10 chr5 3161 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:6:0:0:0,0:0,0:22,22:7,7 41:5:0:0:0,0:0,0:30,30:6,6 chr5 3262 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:0,0:39,39:0,0:1,1 65:0:0:0:0,0:65,65:0,0:0,0 chr5 3267 . C G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:0,0:37,37:5,5:0,0 67:0:0:0:0,0:58,58:0,0:9,9 chr5 3338 . T A,C . QSS_ref NT=het;QSS=57;QSS_NT=25;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:3,3:0,0:30,30 50:0:0:0:4,4:0,0:0,0:46,46 chr5 3359 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:2,2:0,0:29,29:0,0 44:0:0:0:0,0:6,6:38,38:0,0 chr5 3518 . C A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:33,33:0,0:0,0 56:0:0:0:1,1:55,55:0,0:0,0 chr5 3542 . C G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:30,30:0,0:4,4 53:0:0:0:0,0:48,48:5,5:0,0 chr5 3583 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:36,36:1,1:0,0:0,0 53:0:0:0:46,46:0,0:7,7:0,0 chr5 3670 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:9:0:0:0,0:6,6:0,0:16,21 43:12:0:0:5,5:0,0:0,0:26,28 chr5 3752 . G A,C . QSS_ref NT=het;QSS=12;QSS_NT=12;SGT=CG->AG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:2:0:0:0,0:6,6:26,30:0,0 44:5:0:0:2,2:0,0:37,37:0,0 chr5 3774 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:1:0:0:0,0:5,5:0,0:32,33 50:2:0:0:0,0:9,9:0,0:39,39 chr5 3875 . A C . PASS NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:27,27:0,0:0,0:0,0 39:0:0:0:33,33:6,6:0,0:0,0 chr5 4009 . G C . QSS_ref NT=het;QSS=2;QSS_NT=2;SGT=CG->CG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:5,5:23,29:0,0 48:0:0:0:0,0:0,0:46,46:2,2 chr5 4031 . A G,T . QSS_ref NT=het;QSS=12;QSS_NT=12;SGT=AT->AG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:15,21:0,0:0,0:10,10 52:0:0:0:51,51:0,0:1,1:0,0 chr5 4077 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:2,2:0,0:0,0:22,25 51:0:0:0:0,0:0,0:0,0:51,51 chr5 4092 . C G,T . QSS_ref NT=het;QSS=350;QSS_NT=70;SGT=CT->CG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:13,15:0,0:12,12 53:0:0:0:0,0:42,42:11,11:0,0 chr5 4187 . C T . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 17:0:0:0:0,0:12,16:0,0:5,5 53:8:0:0:1,1:44,44:0,0:0,0 chr5 4226 . C G . QSS_ref NT=conflict;QSS=7;QSS_NT=0;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 10:2:0:0:0,2:8,10:0,0:0,0 57:18:0:0:0,0:37,37:2,2:0,0 chr5 4300 . A G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:2:0:0:28,28:0,0:3,3:0,0 65:9:0:0:52,52:0,0:0,0:4,4 chr5 4350 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:1,1:0,0:33,33:0,0 60:0:0:0:0,0:0,0:60,60:0,0 chr5 4359 . T A,G . QSS_ref NT=het;QSS=136;QSS_NT=37;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:5,5:0,0:0,0:26,26 63:0:0:0:0,0:0,0:5,5:58,58 chr5 4391 . T C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:9,9:0,0:22,22 53:0:0:0:0,0:0,0:12,12:41,41 chr5 4476 . A G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:35,39:0,0:0,0:0,0 50:0:0:0:43,43:0,0:7,7:0,0 chr5 4554 . C T . QSS_ref NT=conflict;QSS=3;QSS_NT=0;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 12:0:0:0:0,4:12,15:0,0:0,0 67:0:0:0:0,0:56,56:0,0:11,11 chr5 4594 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 15:0:0:0:0,0:0,0:0,0:15,17 66:0:0:0:0,0:8,8:0,0:58,58 chr5 4657 . T A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:0,0:0,0:21,21 56:0:0:0:2,2:0,0:0,0:54,54 chr5 4686 . C A,G . QSS_ref NT=het;QSS=195;QSS_NT=59;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:19,19:6,6:0,0 54:0:0:0:5,5:49,49:0,0:0,0 chr5 4731 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:25,25:0,0 57:0:0:0:0,0:1,1:56,56:0,0 chr5 4741 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:1,1:26,26:0,0:0,0 53:0:0:0:0,0:50,50:3,3:0,0 chr5 4754 . T A . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:0,0:26,26 47:0:0:0:5,5:0,0:0,0:42,42 chr5 4792 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:0,0:31,31 57:0:0:0:0,0:0,0:1,1:56,56 chr5 4796 . T A,C . QSS_ref NT=het;QSS=200;QSS_NT=49;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:6,6:0,0:0,0:25,25 58:0:0:0:0,0:12,12:0,0:46,46 chr5 4897 . T C . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:0,0:29,29 58:0:0:0:0,0:2,2:0,0:56,56 chr5 4924 . G A,C . QSS_ref NT=het;QSS=54;QSS_NT=16;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:3,3:0,0:30,30:0,0 49:0:0:0:0,0:5,5:44,44:0,0 chr5 4964 . A C,T . QSS_ref NT=het;QSS=87;QSS_NT=30;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:29,29:5,5:0,0:0,0 52:0:0:0:48,48:0,0:0,0:4,4 chr5 4994 . T C . PASS NT=ref;QSS=29;QSS_NT=29;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:0,0:0,0:0,0:39,39 53:0:0:0:0,0:9,9:0,0:44,44 chr5 5030 . G A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:3,3:0,0:29,29:0,0 52:0:0:0:0,0:10,10:42,42:0,0 chr5 5067 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:19,19:0,0:3,3 43:0:0:0:0,0:40,40:0,0:3,3 chr5 5113 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:2,2:23,23:0,0:0,0 45:0:0:0:4,4:41,41:0,0:0,0 chr5 5158 . T G . QSS_ref NT=het;QSS=3;QSS_NT=3;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:2,2:25,25 54:0:0:0:2,2:0,0:0,0:52,52 chr5 5259 . G T . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 44:0:0:0:0,0:0,0:44,44:0,0 48:0:0:0:0,0:0,0:47,47:1,1 chr5 5266 . G A,T . QSS_ref NT=het;QSS=244;QSS_NT=34;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 45:0:0:0:9,9:0,0:36,36:0,0 46:0:0:0:0,0:0,0:39,39:7,7 chr5 5412 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:32,32:5,5:0,0 58:0:0:0:0,0:54,54:4,4:0,0 chr5 5437 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:10,10:0,0:0,0:28,28 55:0:0:0:0,0:4,4:0,0:51,51 chr5 5487 . T A,G . QSS_ref NT=het;QSS=330;QSS_NT=53;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:10,10:27,27 53:0:0:0:15,15:0,0:0,0:38,38 chr5 5707 . A G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:31,31:0,0:0,0:4,4 66:0:0:0:59,59:0,0:7,7:0,0 chr5 5739 . G T . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:37,37:0,0 59:0:0:0:0,0:0,0:56,56:3,3 chr5 5758 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 44:0:0:0:0,0:0,0:0,0:44,44 61:0:0:0:0,0:0,0:1,1:60,60 chr5 5766 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 43:0:0:0:4,4:39,39:0,0:0,0 62:0:0:0:4,4:58,58:0,0:0,0 chr5 5786 . A C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:37,37:0,0:0,0:0,0 64:0:0:0:60,60:4,4:0,0:0,0 chr5 5801 . T A,G . QSS_ref NT=het;QSS=430;QSS_NT=55;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:11,11:0,0:0,0:27,27 60:0:0:0:0,0:0,0:13,13:47,47 chr5 5857 . T C . PASS NT=ref;QSS=23;QSS_NT=23;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:0,0:31,31 51:0:0:0:0,0:8,8:0,0:43,43 chr5 6002 . G A,C . QSS_ref NT=het;QSS=268;QSS_NT=61;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:4:0:0:8,8:0,0:21,21:0,0 53:9:0:0:0,0:9,9:35,35:0,0 chr5 6039 . A G . QSS_ref;BCNoise NT=ref;QSS=12;QSS_NT=12;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:13:0:0:19,24:0,0:0,0:0,0 53:26:0:0:26,29:0,0:1,1:0,0 chr5 6042 . T G . BCNoise;QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:13:0:0:0,0:0,0:0,0:20,25 54:26:0:0:0,0:0,0:1,1:27,30 chr5 6171 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:31,31:0,0 48:0:0:0:0,0:0,0:46,46:2,2 chr5 6222 . A C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:31,31:0,0:0,0:0,0 47:0:0:0:46,46:1,1:0,0:0,0 chr5 6232 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:1,1:31,31:0,0:0,0 48:0:0:0:0,0:45,45:0,0:3,3 chr5 6295 . C G,T . QSS_ref NT=het;QSS=266;QSS_NT=45;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:2:0:0:0,0:29,29:0,0:7,7 51:0:0:0:0,0:37,37:14,14:0,0 chr5 6539 . T A . QSS_ref NT=ref;QSS=13;QSS_NT=13;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:4:0:0:0,0:0,0:0,0:23,24 53:16:0:0:1,1:0,0:0,0:36,37 chr5 6549 . G A,C . QSS_ref NT=het;QSS=4;QSS_NT=4;SGT=AG->CG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:6:0:0:8,8:0,0:16,17:0,0 53:20:0:0:0,0:1,1:32,35:0,0 chr5 6574 . G C . QSS_ref;BCNoise NT=ref;QSS=12;QSS_NT=12;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:5:0:0:0,0:0,0:20,20:0,0 57:25:0:0:0,0:1,1:31,40:0,0 chr5 6599 . C A,T . QSS_ref NT=het;QSS=14;QSS_NT=14;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:4:0:0:0,0:21,21:0,0:2,2 47:9:0:0:6,6:32,32:0,0:0,0 chr5 6631 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:2:0:0:0,0:0,0:28,28:5,5 43:4:0:0:0,0:0,0:32,32:7,7 chr5 6692 . T C . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:3:0:0:0,0:0,0:0,0:35,35 47:3:0:0:0,0:5,5:0,0:39,39 chr5 6705 . A G,T . QSS_ref NT=het;QSS=55;QSS_NT=31;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:5:0:0:31,31:0,0:0,0:3,3 46:4:0:0:39,39:0,0:3,3:0,0 chr5 6722 . C A . QSS_ref NT=het;QSS=5;QSS_NT=5;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:6:0:0:0,0:28,29:2,2:0,0 45:6:0:0:2,2:37,37:0,0:0,0 chr5 6778 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 43:10:0:0:0,0:0,0:0,0:33,36 32:12:0:0:4,4:0,0:0,0:16,17 chr5 6895 . C G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:27,27:0,0:0,0 51:0:0:0:0,0:50,50:1,1:0,0 chr5 6900 . A C,G . QSS_ref NT=het;QSS=125;QSS_NT=41;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:25,25:4,4:0,0:0,0 45:0:0:0:39,39:0,0:6,6:0,0 chr5 6921 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:30,30:0,0:0,0 43:0:0:0:4,4:39,39:0,0:0,0 chr5 6941 . A G . PASS NT=ref;QSS=19;QSS_NT=19;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:33,33:0,0:0,0:0,0 37:0:0:0:33,33:0,0:4,4:0,0 chr5 6982 . G C,T . QSS_ref NT=het;QSS=4;QSS_NT=3;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:0,0:2,2:38,38:0,0 46:0:0:0:0,0:0,0:44,44:2,2 chr5 7011 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:6,6:31,31:0,0:0,0 55:0:0:0:1,1:54,54:0,0:0,0 chr5 7044 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:0,0:32,32 57:0:0:0:0,0:0,0:9,9:48,48 chr5 7168 . C G,T . QSS_ref NT=het;QSS=132;QSS_NT=22;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:0,0:36,36:0,0:5,5 44:0:0:0:0,0:35,35:9,9:0,0 chr5 7214 . G A,C . QSS_ref NT=het;QSS=228;QSS_NT=47;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:0,0:11,11:30,30:0,0 48:0:0:0:7,7:0,0:41,41:0,0 chr5 7286 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:0,0:0,0:36,36 53:0:0:0:0,0:18,18:0,0:35,35 chr5 7412 . G C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:11,11:18,18:0,0 47:0:0:0:0,0:0,0:36,36:11,11 chr5 7562 . A G . QSS_ref NT=ref;QSS=13;QSS_NT=13;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:24,24:0,0:0,0:1,1 55:0:0:0:53,53:0,0:2,2:0,0 chr5 7585 . A C,G . QSS_ref NT=het;QSS=212;QSS_NT=58;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:17,17:0,0:6,6:0,0 56:0:0:0:44,44:12,12:0,0:0,0 chr5 7656 . T G . QSS_ref NT=het;QSS=2;QSS_NT=2;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:2,2:0,0:0,0:28,28 55:0:0:0:0,0:0,0:6,6:49,49 chr5 7747 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:31,31:0,0:0,0:0,0 45:0:0:0:43,43:2,2:0,0:0,0 chr5 7768 . G A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:23,23:9,9 45:1:0:0:7,7:0,0:37,37:0,0 chr5 7837 . C A,G . 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QSS_ref NT=het;QSS=82;QSS_NT=29;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:4,4:0,0:0,0:27,27 40:0:0:0:0,0:0,0:7,7:33,33 chr5 8332 . G C . QSS_ref NT=het;QSS=5;QSS_NT=5;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:2,2:0,0:26,26:0,0 44:0:0:0:0,0:5,5:39,39:0,0 chr5 8375 . C A,T . QSS_ref NT=het;QSS=66;QSS_NT=43;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:25,25:0,0:3,3 56:0:0:0:3,3:53,53:0,0:0,0 chr5 8390 . G C,T . QSS_ref NT=het;QSS=17;QSS_NT=17;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:3,3:24,24:0,0 63:0:0:0:0,0:0,0:56,56:7,7 chr5 8548 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:9,9:0,0:0,0:25,25 49:6:0:0:0,0:12,12:0,0:31,31 chr5 8605 . C G . QSS_ref;BCNoise NT=conflict;QSS=3070;QSS_NT=0;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:19:0:0:0,0:15,20:0,0:1,1 37:20:0:0:0,0:16,19:1,1:0,0 chr5 8645 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:7:0:0:4,4:0,0:0,0:20,20 44:5:0:0:0,0:3,3:0,0:36,36 chr5 8692 . C A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:2:0:0:3,3:22,22:0,0:0,0 47:0:0:0:0,0:38,38:9,9:0,0 chr5 8742 . C G . PASS NT=ref;QSS=16;QSS_NT=16;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:28,32:0,0:0,0 41:0:0:0:0,0:38,38:3,3:0,0 chr5 8779 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:25,29:0,0:0,0 49:0:0:0:0,0:47,47:0,0:2,2 chr5 8807 . A C,T . QSS_ref NT=het;QSS=129;QSS_NT=49;SGT=AT->AC;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:17,21:0,0:0,0:4,4 53:0:0:0:47,47:6,6:0,0:0,0 chr5 8850 . T G . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:0,0:0,0:22,22 51:0:0:0:0,0:0,0:1,1:50,50 chr5 8874 . G T . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:26,26:0,0 49:0:0:0:0,0:0,0:46,46:3,3 chr5 8938 . T A,C . QSS_ref NT=het;QSS=171;QSS_NT=59;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:5,5:0,0:17,17 49:0:0:0:6,6:0,0:0,0:43,43 chr5 8989 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:0,0:31,31 52:0:0:0:0,0:2,2:0,0:50,50 chr5 9010 . C G,T . QSS_ref NT=het;QSS=50;QSS_NT=33;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:32,32:4,4:0,0 52:0:0:0:0,0:49,49:0,0:3,3 chr5 9087 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:28,28:0,0 60:0:0:0:0,0:2,2:58,58:0,0 chr5 9114 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:1,1:0,0:0,0:28,28 54:0:0:0:1,1:0,0:0,0:53,53 chr5 9137 . T C . PASS NT=ref;QSS=16;QSS_NT=16;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:0,0:29,29 55:0:0:0:0,0:4,4:0,0:51,51 chr5 9166 . G A . QSS_ref NT=het;QSS=4;QSS_NT=4;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:26,26:2,2 40:0:0:0:2,2:0,0:38,38:0,0 chr5 9203 . A C,T . QSS_ref NT=het;QSS=292;QSS_NT=63;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:19,19:8,8:0,0:0,0 39:0:0:0:30,30:0,0:0,0:9,9 chr5 9270 . C A,T . QSS_ref NT=het;QSS=147;QSS_NT=51;SGT=CT->AC;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 19:0:0:0:0,0:14,19:0,0:5,5 47:0:0:0:7,7:40,40:0,0:0,0 chr5 9319 . G T . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 12:0:0:0:0,1:0,0:12,16:0,0 52:0:0:0:0,0:0,0:51,51:1,1 chr5 9325 . C T . QSS_ref NT=conflict;QSS=12;QSS_NT=0;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 14:0:0:0:0,2:14,16:0,0:0,0 53:0:0:0:0,0:46,46:0,0:7,7 chr5 9458 . A . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AA->AA;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:23,23:0,0:0,0:0,0 43:0:0:0:41,41:2,2:0,0:0,0 chr5 9511 . G T . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:3:0:0:0,0:0,0:20,21:0,0 40:3:0:0:0,0:0,0:33,33:4,4 chr5 9675 . A C,T . QSS_ref NT=het;QSS=146;QSS_NT=56;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:18,18:0,0:0,0:6,6 36:0:0:0:31,31:5,5:0,0:0,0 chr5 9755 . A T . QSS_ref NT=ref;QSS=13;QSS_NT=13;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:25,25:0,0:0,0:1,1 51:0:0:0:50,50:0,0:0,0:1,1 chr5 9787 . G A . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:32,32:0,0 48:0:0:0:3,3:0,0:45,45:0,0 chr5 9805 . G A,T . QSS_ref NT=het;QSS=3;QSS_NT=3;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:26,26:4,4 52:0:0:0:2,2:0,0:50,50:0,0 chr5 9882 . T G . PASS NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:0,0:30,30 62:0:0:0:0,0:0,0:3,3:59,59 chr5 10002 . T A,G . QSS_ref NT=het;QSS=14;QSS_NT=14;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:0,0:2,2:19,19 56:0:0:0:13,13:0,0:0,0:43,43 chr5 10072 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 18:0:0:0:4,4:0,0:0,0:14,19 46:0:0:0:4,4:0,0:0,0:42,42 chr5 10103 . A G . QSS_ref NT=conflict;QSS=3070;QSS_NT=0;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 14:0:0:0:14,16:0,3:0,0:0,0 52:0:0:0:45,45:0,0:7,7:0,0 chr5 10143 . T A,G . QSS_ref NT=het;QSS=244;QSS_NT=65;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:0,0:0,0:6,6:14,14 61:0:0:0:16,16:0,0:0,0:45,45 chr5 10229 . G C . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:0,0:0,0:20,20:0,0 67:0:0:0:0,0:1,1:66,66:0,0 chr5 10247 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 19:0:0:0:17,17:2,2:0,0:0,0 61:0:0:0:57,57:0,0:4,4:0,0 chr5 10286 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:28,28:3,3:0,0:0,0 60:0:0:0:50,50:0,0:10,10:0,0 chr5 10322 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:34,34:0,0:0,0:0,0 51:0:0:0:45,45:0,0:0,0:6,6 chr5 10347 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:15,15:23,23:0,0:0,0 45:0:0:0:0,0:32,32:0,0:13,13 chr5 10419 . C A . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:32,32:0,0:0,0 42:0:0:0:1,1:41,41:0,0:0,0 chr5 10503 . C A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:1,1:20,20:0,0:0,0 60:0:0:0:7,7:53,53:0,0:0,0 chr5 10595 . C T . QSS_ref NT=ref;QSS=13;QSS_NT=13;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:22,22:0,0:0,0 49:0:0:0:0,0:46,46:0,0:3,3 chr5 10616 . G C . PASS NT=ref;QSS=21;QSS_NT=21;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:0,0:22,22:0,0 44:0:0:0:0,0:7,7:37,37:0,0 chr5 10685 . C G,T . QSS_ref NT=het;QSS=197;QSS_NT=58;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:1:0:0:0,0:17,17:0,0:6,6 45:0:0:0:0,0:39,39:6,6:0,0 chr5 10813 . T A,G . QSS_ref NT=het;QSS=254;QSS_NT=70;SGT=GT->AT;SOMATIC;TQSS=2;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:5:0:0:0,0:0,0:8,8:9,9 49:12:0:0:9,10:0,0:0,0:28,29 chr5 10895 . G T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:34,34:0,0 46:0:0:0:0,0:0,0:44,44:2,2 chr5 10924 . G A,C . QSS_ref NT=het;QSS=18;QSS_NT=9;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:2,2:34,34:0,0 41:0:0:0:5,5:0,0:36,36:0,0 chr5 10966 . G A,T . QSS_ref NT=het;QSS=106;QSS_NT=35;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:29,29:6,6 43:0:0:0:4,4:0,0:39,39:0,0 chr5 11013 . A G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:1:0:0:29,29:0,0:0,0:1,1 52:2:0:0:47,47:0,0:3,3:0,0 chr5 11199 . G C . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:26,26:0,0 40:0:0:0:0,0:7,7:33,33:0,0 chr5 11253 . G A,C . QSS_ref NT=het;QSS=230;QSS_NT=54;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:6,6:0,0:22,22:0,0 42:0:0:0:0,0:10,10:32,32:0,0 chr5 11346 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:17,17:0,0:0,0:3,3 49:0:0:0:49,49:0,0:0,0:0,0 chr5 11373 . T G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:0,0:0,0:0,0:20,20 54:0:0:0:0,0:0,0:3,3:51,51 chr5 11456 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:33,33:0,0:0,0:0,0 58:0:0:0:49,49:0,0:9,9:0,0 chr5 11585 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:0,0:25,25 50:0:0:0:2,2:0,0:0,0:48,48 chr5 11612 . G C,T . QSS_ref NT=het;QSS=93;QSS_NT=36;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:4,4:24,24:0,0 51:0:0:0:0,0:0,0:47,47:4,4 chr5 11654 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:3,3:26,26:0,0:0,0 53:0:0:0:0,0:52,52:0,0:1,1 chr5 11675 . A T . PASS NT=ref;QSS=17;QSS_NT=17;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:31,31:0,0:0,0:0,0 53:0:0:0:51,51:0,0:0,0:2,2 chr5 11685 . T C . PASS NT=ref;QSS=21;QSS_NT=21;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:1,1:0,0:0,0:31,31 50:0:0:0:0,0:8,8:0,0:42,42 chr5 11715 . G A,T . QSS_ref NT=het;QSS=52;QSS_NT=34;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:26,26:3,3 41:0:0:0:8,8:0,0:33,33:0,0 chr5 11751 . A C . PASS NT=ref;QSS=18;QSS_NT=18;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:35,35:0,0:0,0:0,0 46:0:0:0:45,45:1,1:0,0:0,0 chr5 11783 . T A,G . QSS_ref NT=het;QSS=334;QSS_NT=57;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:9,9:28,28 43:0:0:0:13,13:0,0:0,0:30,30 chr5 11907 . G T . QSS_ref NT=ref;QSS=6;QSS_NT=6;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:34,34:0,0 48:0:0:0:0,0:0,0:44,44:4,4 chr5 11975 . T A,G . QSS_ref NT=het;QSS=138;QSS_NT=43;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:5,5:0,0:0,0:23,23 56:0:0:0:0,0:0,0:9,9:47,47 chr5 12048 . C G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:27,27:0,0:0,0 49:0:0:0:0,0:48,48:1,1:0,0 chr5 12057 . A G . QSS_ref NT=ref;QSS=8;QSS_NT=8;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:27,27:1,1:0,0:0,0 44:0:0:0:41,41:0,0:3,3:0,0 chr5 12100 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:25,25:0,0:0,0:0,0 43:0:0:0:42,42:1,1:0,0:0,0 chr5 12203 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:3,3:25,25 43:0:0:0:8,8:0,0:0,0:35,35 chr5 12265 . T A,G . QSS_ref NT=het;QSS=4;QSS_NT=4;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:4,4:33,33 56:0:0:0:2,2:0,0:0,0:54,54 chr5 12283 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:6,6:33,33:0,0:0,0 54:0:0:0:9,9:45,45:0,0:0,0 chr5 12341 . C A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:0,0:39,39:2,2:0,0 45:0:0:0:7,7:38,38:0,0:0,0 chr5 12371 . T C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:8,8:26,26 51:0:0:0:0,0:4,4:0,0:47,47 chr5 12538 . G C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:22,22:4,4 48:0:0:0:0,0:8,8:40,40:0,0 chr5 12577 . G A,T . QSS_ref NT=het;QSS=151;QSS_NT=60;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:22,22:6,6 46:0:0:0:4,4:0,0:42,42:0,0 chr5 12610 . A C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:32,32:0,0:0,0:0,0 52:0:0:0:50,50:2,2:0,0:0,0 chr5 12623 . T C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:2,2:27,27 50:0:0:0:0,0:10,10:0,0:40,40 chr5 12677 . G C . PASS NT=ref;QSS=15;QSS_NT=15;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:28,28:0,0 53:0:0:0:0,0:2,2:51,51:0,0 chr5 12687 . A G,T . QSS_ref NT=het;QSS=115;QSS_NT=41;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:25,25:0,0:0,0:4,4 50:0:0:0:44,44:0,0:6,6:0,0 chr5 12713 . A C,T . QSS_ref NT=het;QSS=37;QSS_NT=36;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:18,18:0,0:0,0:2,2 48:0:0:0:44,44:4,4:0,0:0,0 chr5 12755 . G A . PASS NT=ref;QSS=15;QSS_NT=15;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:26,26:0,0 51:0:0:0:6,6:0,0:45,45:0,0 chr5 12777 . G C . PASS NT=ref;QSS=20;QSS_NT=20;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:30,30:0,0 49:0:0:0:0,0:8,8:41,41:0,0 chr5 12824 . T C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:4,4:0,0:30,30 51:0:0:0:0,0:0,0:13,13:38,38 chr5 12895 . A T . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:30,30:0,0:0,0:0,0 39:0:0:0:36,36:0,0:0,0:3,3 chr5 12994 . G C . QSS_ref NT=het;QSS=21;QSS_NT=21;SGT=CG->GG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:11,11:12,12:0,0 62:0:0:0:0,0:0,0:62,62:0,0 chr5 13197 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:35,35:0,0:0,0 44:0:0:0:1,1:43,43:0,0:0,0 chr5 13270 . A T . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:31,31:0,0:0,0:0,0 59:0:0:0:58,58:0,0:0,0:1,1 chr5 13312 . C G,T . QSS_ref NT=het;QSS=304;QSS_NT=56;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:23,23:9,9:0,0 49:0:0:0:0,0:41,41:0,0:8,8 chr5 13385 . G A,T . QSS_ref NT=het;QSS=97;QSS_NT=34;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:5,5:0,0:27,27:0,0 34:0:0:0:0,0:0,0:27,27:7,7 chr5 13546 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:2,2:0,0:0,0:30,30 47:0:0:0:6,6:0,0:0,0:41,41 chr5 13601 . T . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=TT->TT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:0,0:35,35 50:0:0:0:2,2:0,0:0,0:48,48 chr5 13618 . C T . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:38,38:0,0:0,0 47:0:0:0:0,0:36,36:0,0:11,11 chr5 13737 . C A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:31,31:2,2:0,0 56:0:0:0:1,1:55,55:0,0:0,0 chr5 13881 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:28,28:6,6 55:0:0:0:0,0:0,0:49,49:6,6 chr5 14034 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:0,0:33,33:8,8:0,0 69:0:0:0:0,0:63,63:6,6:0,0 chr5 14092 . C A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:6,6:28,28:0,0:0,0 60:0:0:0:0,0:51,51:9,9:0,0 chr5 14113 . C A,T . QSS_ref NT=het;QSS=227;QSS_NT=71;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:15,15:0,0:13,13 53:0:0:0:5,5:48,48:0,0:0,0 chr5 14147 . C G . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:32,32:0,0:0,0 53:0:0:0:0,0:42,42:11,11:0,0 chr5 14186 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:29,29:0,0:0,0:0,0 48:0:0:0:47,47:0,0:1,1:0,0 chr5 14262 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:19,19:5,5:0,0:0,0 50:0:0:0:43,43:7,7:0,0:0,0 chr5 14314 . C A . PASS NT=ref;QSS=42;QSS_NT=42;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:1:0:0:0,0:31,31:0,0:0,0 56:5:0:0:16,16:35,35:0,0:0,0 chr5 14379 . A C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 19:0:8:0:13,13:0,0:0,0:6,6 35:13:14:0:19,19:3,3:0,0:0,1 chr5 14418 . C T . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:2:0:0:0,0:29,29:0,0:0,0 53:16:0:0:0,0:31,32:0,0:6,6 chr5 14491 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:26,26:0,0:0,0:8,8 41:0:0:0:29,29:0,0:0,0:12,12 chr5 14592 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:30,30:0,0 53:0:0:0:0,0:0,0:52,52:1,1 chr5 14653 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:1,1:0,0:28,28:0,0 60:0:0:0:7,7:0,0:53,53:0,0 chr5 14740 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:24,24:3,3 51:0:0:0:0,0:0,0:51,51:0,0 chr5 14752 . C G,T . QSS_ref NT=het;QSS=224;QSS_NT=60;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:18,18:0,0:6,6 49:0:0:0:0,0:43,43:6,6:0,0 chr5 14792 . A G,T . QSS_ref NT=het;QSS=158;QSS_NT=57;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:20,20:0,0:6,6:0,0 41:0:0:0:30,30:0,0:0,0:11,11 chr5 14863 . T G . PASS NT=ref;QSS=18;QSS_NT=18;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:0,0:34,34 50:0:0:0:0,0:0,0:2,2:48,48 chr5 14883 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:0,0:2,2:33,33 48:0:0:0:0,0:1,1:0,0:47,47 chr5 15001 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:3,3:0,0:0,0:31,31 57:1:0:0:0,0:0,0:4,4:52,52 chr5 15025 . C G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:2:0:0:0,0:31,31:0,0:2,2 54:2:0:0:0,0:50,50:2,2:0,0 chr5 15035 . A C,G . QSS_ref NT=het;QSS=39;QSS_NT=39;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:2:0:0:23,23:6,6:0,0:0,0 51:3:0:0:46,46:0,0:2,2:0,0 chr5 15076 . A C,G . QSS_ref NT=het;QSS=58;QSS_NT=56;SGT=AC->AG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:9:0:0:12,13:3,3:0,0:0,0 44:12:0:0:24,26:0,0:8,9:0,0 chr5 15147 . C G . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:1:0:0:0,0:21,21:0,0:0,0 47:2:0:0:0,0:44,44:1,1:0,0 chr5 15156 . T A . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:1:0:0:0,0:0,0:0,0:22,22 49:2:0:0:2,2:0,0:0,0:45,45 chr5 15208 . A C,T . QSS_ref NT=het;QSS=237;QSS_NT=59;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:18,18:0,0:0,0:7,7 48:0:0:0:36,36:12,12:0,0:0,0 chr5 15308 . C A . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:32,32:0,0:0,0 45:0:0:0:3,3:42,42:0,0:0,0 chr5 15512 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:31,31:2,2 48:0:0:0:1,1:0,0:47,47:0,0 chr5 15535 . G C . PASS NT=ref;QSS=16;QSS_NT=16;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:30,30:0,0 49:0:0:0:0,0:1,1:48,48:0,0 chr5 15543 . C G,T . QSS_ref NT=het;QSS=39;QSS_NT=29;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:28,28:0,0:3,3 48:0:0:0:0,0:38,38:10,10:0,0 chr5 15673 . C A . PASS NT=ref;QSS=21;QSS_NT=21;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:31,31:0,0:0,0 44:0:0:0:9,9:35,35:0,0:0,0 chr5 15716 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:2,2:0,0:26,26 51:0:0:0:0,0:0,0:0,0:51,51 chr5 15727 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:26,26:0,0:0,0 49:0:0:0:0,0:42,42:0,0:7,7 chr5 15903 . G T . BCNoise NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:14:0:0:0,0:0,0:19,24:0,0 62:23:0:0:0,0:0,0:38,49:1,1 chr5 15909 . A C . BCNoise;QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:15:0:0:17,22:0,0:1,1:0,0 56:25:0:0:31,36:0,0:0,1:0,0 chr5 15978 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:3:0:0:0,0:4,4:0,0:21,21 44:3:0:0:0,0:6,6:0,0:35,35 chr5 16021 . G A . PASS NT=ref;QSS=16;QSS_NT=16;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:30,30:1,1 44:0:0:0:2,2:0,0:42,42:0,0 chr5 16033 . C T . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:31,31:0,0:0,0 38:0:0:0:0,0:37,37:0,0:1,1 chr5 16044 . G C,T . QSS_ref NT=het;QSS=198;QSS_NT=45;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:26,26:7,7 39:0:0:0:0,0:6,6:33,33:0,0 chr5 16110 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:36,36:0,0:0,0 52:0:0:0:0,0:51,51:1,1:0,0 chr5 16192 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:5,5:0,0:25,25 58:0:0:0:0,0:8,8:0,0:50,50 chr5 16224 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:3,3:24,24 59:0:0:0:2,2:0,0:0,0:57,57 chr5 16233 . G C . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:25,25:0,0 60:0:0:0:0,0:6,6:54,54:0,0 chr5 16475 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:0,0:33,33 57:0:0:0:0,0:0,0:1,1:56,56 chr5 16476 . C G,T . QSS_ref NT=het;QSS=77;QSS_NT=41;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:25,25:0,0:7,7 58:0:0:0:0,0:55,55:3,3:0,0 chr5 16479 . A T . QSS_ref NT=ref;QSS=10;QSS_NT=10;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:32,32:0,0:0,0:0,0 55:0:0:0:50,50:0,0:0,0:5,5 chr5 16513 . A C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:28,28:8,8:0,0:0,0 55:0:0:0:50,50:0,0:0,0:5,5 chr5 16569 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:34,34:2,2:0,0 46:0:0:0:0,0:43,43:3,3:0,0 chr5 16604 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:32,32:1,1 46:0:0:0:0,0:3,3:43,43:0,0 chr5 16618 . G . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=GG->GG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:33,33:0,0 47:0:0:0:0,0:2,2:45,45:0,0 chr5 16641 . G A,C . QSS_ref NT=het;QSS=468;QSS_NT=67;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:11,11:0,0:20,20:0,0 44:0:0:0:0,0:24,24:20,20:0,0 chr5 16861 . T A,C . QSS_ref NT=het;QSS=238;QSS_NT=60;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:8,8:0,0:0,0:19,19 43:4:0:0:0,0:7,7:0,0:32,32 chr5 16898 . T C . PASS NT=ref;QSS=26;QSS_NT=26;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:2:0:0:0,0:0,0:0,0:25,25 43:10:0:0:0,0:9,9:0,0:24,24 chr5 17081 . G C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:11,11:25,25:0,0 46:0:0:0:0,0:0,0:39,39:7,7 chr5 17193 . G C,T . QSS_ref NT=het;QSS=258;QSS_NT=47;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:0,0:30,30:8,8 66:0:0:0:0,0:7,7:59,59:0,0 chr5 17242 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:1,1:0,0:32,32:0,0 62:0:0:0:0,0:1,1:61,61:0,0 chr5 17277 . T A,G . QSS_ref NT=het;QSS=204;QSS_NT=38;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:6,6:0,0:0,0:34,34 47:0:0:0:0,0:0,0:8,8:39,39 chr5 17328 . A C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:34,34:1,1:0,0:0,0 42:0:0:0:36,36:6,6:0,0:0,0 chr5 17393 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:0,0:26,26 48:0:0:0:3,3:0,0:0,0:45,45 chr5 17404 . A C,G . QSS_ref NT=het;QSS=9;QSS_NT=9;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:24,24:2,2:0,0:0,0 51:0:0:0:46,46:0,0:5,5:0,0 chr5 17435 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:1,1:0,0:26,26:0,0 54:0:0:0:0,0:0,0:53,53:1,1 chr5 17437 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:5,5:0,0:0,0:21,21 52:0:0:0:0,0:5,5:0,0:47,47 chr5 17543 . G T . PASS NT=ref;QSS=19;QSS_NT=19;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:37,37:0,0 67:0:0:0:0,0:0,0:65,65:2,2 chr5 17565 . A T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:35,35:0,0:0,0:1,1 65:0:0:0:64,64:0,0:0,0:1,1 chr5 17570 . A C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:28,28:7,7:0,0:0,0 65:0:0:0:59,59:0,0:0,0:6,6 chr5 17761 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:1,1:0,0:0,0:35,35 53:0:0:0:0,0:2,2:0,0:51,51 chr5 17786 . C G,T . QSS_ref NT=het;QSS=21;QSS_NT=20;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 45:0:0:0:0,0:38,38:7,7:0,0 55:0:0:0:0,0:53,53:0,0:2,2 chr5 17823 . C A . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:38,38:0,0:0,0 67:0:0:0:1,1:66,66:0,0:0,0 chr5 17827 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:0,0:1,1:0,0:39,39 66:0:0:0:9,9:0,0:0,0:57,57 chr5 17860 . G C,T . QSS_ref NT=het;QSS=20;QSS_NT=20;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:3,3:29,29:0,0 63:0:0:0:0,0:0,0:61,61:2,2 chr5 17881 . G A,C . QSS_ref NT=het;QSS=69;QSS_NT=31;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:3,3:0,0:24,24:0,0 64:0:0:0:0,0:11,11:53,53:0,0 chr5 17918 . C G . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:25,25:0,0:0,0 59:0:0:0:0,0:57,57:2,2:0,0 chr5 17933 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:2,2:0,0:22,22:0,0 62:0:0:0:11,11:0,0:51,51:0,0 chr5 17997 . C T . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:1:0:0:1,1:25,25:0,0:0,0 55:2:0:0:0,0:47,47:0,0:6,6 chr5 18021 . A C,G . QSS_ref NT=het;QSS=51;QSS_NT=43;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:2:0:0:18,18:3,3:0,0:0,0 50:4:0:0:43,43:0,0:3,3:0,0 chr5 18050 . A T . BCNoise;QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:12:0:0:19,23:0,0:0,0:2,2 53:29:0:0:24,39:0,0:0,0:0,0 chr5 18066 . G A,C . QSS_ref;BCNoise NT=het;QSS=32;QSS_NT=32;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 16:0:13:0:0,0:2,2:14,14:0,0 43:26:15:0:5,5:0,1:12,13:0,0 chr5 18111 . G A,C . QSS_ref NT=het;QSS=270;QSS_NT=58;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:8:0:0:8,8:0,0:20,20:0,0 69:26:0:0:0,0:7,7:36,36:0,0 chr5 18166 . T G . QSS_ref;BCNoise NT=conflict;QSS=11;QSS_NT=0;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:19:0:0:1,1:0,0:0,0:13,18 60:32:0:0:0,0:0,0:2,2:26,40 chr5 18173 . C G . BCNoise;QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:19:0:0:0,0:13,13:0,0:0,0 52:30:0:0:0,0:20,20:2,2:0,0 chr5 18200 . C G,T . QSS_ref NT=het;QSS=279;QSS_NT=66;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:9:0:0:0,0:13,14:0,0:8,8 51:17:0:0:0,0:20,21:14,14:0,0 chr5 18291 . G A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:0,0:31,31:7,7 60:0:0:0:19,19:0,0:41,41:0,0 chr5 18371 . G A,C . QSS_ref NT=het;QSS=195;QSS_NT=45;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:7,7:26,26:0,0 60:0:0:0:14,14:0,0:46,46:0,0 chr5 18479 . A G,T . QSS_ref NT=het;QSS=488;QSS_NT=69;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:17,17:0,0:0,0:12,12 49:0:0:0:33,33:0,0:16,16:0,0 chr5 18633 . A T . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:5:0:0:25,25:0,0:0,0:0,0 47:8:0:0:38,38:0,0:0,0:1,1 chr5 18682 . C . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CC->CC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:1:0:0:0,0:26,26:0,0:0,0 49:8:0:0:2,2:39,40:0,0:0,0 chr5 18713 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:1:0:0:0,0:0,0:25,25:0,0 55:5:0:0:0,0:2,2:48,48:0,0 chr5 18723 . C G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:1:0:0:0,0:28,28:0,0:0,0 56:5:0:0:0,0:45,45:6,6:0,0 chr5 18769 . C G,T . QSS_ref NT=het;QSS=38;QSS_NT=19;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:29,29:3,3:0,0 51:0:0:0:0,0:47,47:0,0:4,4 chr5 18806 . C G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:31,31:3,3:0,0 47:0:0:0:0,0:45,45:2,2:0,0 chr5 18887 . T A,G . QSS_ref NT=het;QSS=46;QSS_NT=28;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:3,3:25,25 57:0:0:0:4,4:0,0:0,0:53,53 chr5 18902 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:1,1:26,26 55:0:0:0:0,0:0,0:0,0:55,55 chr5 18911 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:0,0:25,25 56:0:0:0:0,0:1,1:0,0:55,55 chr5 18931 . G A,C . QSS_ref NT=het;QSS=251;QSS_NT=57;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:8,8:0,0:21,21:0,0 49:0:0:0:0,0:7,7:42,42:0,0 chr5 18989 . C A . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:7:0:0:0,0:22,22:1,1:0,0 50:12:0:0:1,1:37,37:0,0:0,0 chr5 19080 . A G,T . QSS_ref NT=het;QSS=99;QSS_NT=71;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:4:0:0:20,20:0,0:16,16:0,0 55:4:0:0:49,49:0,0:0,0:2,2 chr5 19085 . G C . PASS NT=ref;QSS=26;QSS_NT=26;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:1:0:0:0,0:0,0:36,36:0,0 52:4:0:0:0,0:10,10:38,38:0,0 chr5 19136 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:5,5:29,29 49:0:0:0:7,7:0,0:0,0:42,42 chr5 19248 . A C,T . QSS_ref NT=het;QSS=53;QSS_NT=5;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:35,35:0,0:0,0:3,3 60:0:0:0:56,56:4,4:0,0:0,0 chr5 19274 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:8,8:0,0:29,29 62:0:0:0:0,0:17,17:0,0:45,45 chr5 19380 . A G . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:28,28:0,0:0,0:0,0 49:0:0:0:48,48:0,0:1,1:0,0 chr5 19385 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:2,2:28,28:0,0 50:0:0:0:0,0:0,0:50,50:0,0 chr5 19417 . G A,T . QSS_ref NT=het;QSS=54;QSS_NT=12;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:3,3:0,0:32,32:0,0 54:0:0:0:0,0:0,0:48,48:6,6 chr5 19465 . G C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:5,5:29,29:0,0 52:0:0:0:0,0:0,0:48,48:4,4 chr5 19541 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:29,29:0,0 53:0:0:0:5,5:0,0:48,48:0,0 chr5 19610 . A C,G . QSS_ref NT=het;QSS=223;QSS_NT=61;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:19,19:0,0:7,7:0,0 57:0:0:0:46,46:11,11:0,0:0,0 chr5 19714 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:5,5:0,0:28,28:0,0 42:0:0:0:7,7:0,0:35,35:0,0 chr5 19743 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:2,2:0,0:24,24:0,0 40:0:0:0:0,0:2,2:38,38:0,0 chr5 19753 . G A . QSS_ref NT=het;QSS=3;QSS_NT=3;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:5,5:0,0:23,23:0,0 44:0:0:0:0,0:0,0:43,43:1,1 chr5 19809 . A C,G . QSS_ref NT=het;QSS=13;QSS_NT=12;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:32,32:0,0:3,3:0,0 54:0:0:0:52,52:2,2:0,0:0,0 chr5 19837 . C A,T . QSS_ref NT=het;QSS=15;QSS_NT=14;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:29,29:0,0:2,2 50:0:0:0:4,4:46,46:0,0:0,0 chr5 19871 . G A,T . QSS_ref NT=het;QSS=93;QSS_NT=28;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:0,0:32,32:4,4 56:0:0:0:5,5:0,0:51,51:0,0 chr5 19902 . G T . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:32,32:0,0 48:0:0:0:0,0:0,0:46,46:2,2 chr5 20020 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:31,31:0,0:0,0 41:0:0:0:2,2:39,39:0,0:0,0 chr5 20073 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:20,20:4,4:0,0:0,0 44:0:0:0:38,38:0,0:6,6:0,0 chr5 20142 . A C . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:26,26:0,0:0,0:0,0 51:0:0:0:50,50:1,1:0,0:0,0 chr5 20168 . T C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:4,4:20,20 55:0:0:0:0,0:2,2:0,0:53,53 chr5 20321 . A G . QSS_ref;BCNoise NT=ref;QSS=12;QSS_NT=12;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:16:0:0:19,19:0,0:0,0:0,0 50:25:0:0:24,24:0,0:1,1:0,0 chr5 20349 . G T . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:12:0:0:0,0:0,0:21,21:0,0 48:18:0:0:0,0:0,0:29,32:1,1 chr5 20369 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:6:0:0:0,0:0,0:23,23:1,1 47:9:0:0:0,0:2,2:36,36:0,0 chr5 20404 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:2:0:0:0,0:8,8:0,0:22,22 47:1:0:0:10,10:0,0:0,0:36,36 chr5 20489 . A C,T . QSS_ref NT=het;QSS=245;QSS_NT=54;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:21,21:7,7:0,0:0,0 54:0:0:0:45,45:0,0:0,0:9,9 chr5 20681 . A G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:9:0:0:18,18:0,0:0,0:0,0 50:16:0:0:31,31:0,0:3,5:0,0 chr5 20689 . G C,T . BCNoise;QSS_ref NT=het;QSS=106;QSS_NT=60;SGT=CG->GT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:14:0:0:0,0:4,4:7,12:0,0 42:25:0:0:0,0:0,0:11,21:6,6 chr5 20812 . C A . QSS_ref;BCNoise NT=ref;QSS=6;QSS_NT=6;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:17:0:0:0,0:19,19:0,0:0,0 51:28:0:0:0,0:22,22:0,0:1,1 chr5 20892 . T C,G . QSS_ref NT=het;QSS=611;QSS_NT=71;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:2:0:0:0,0:14,14:0,0:17,17 54:1:0:0:0,0:0,0:17,17:36,36 chr5 21044 . T C,G . QSS_ref NT=het;QSS=60;QSS_NT=30;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:3,3:0,0:31,31 53:0:0:0:0,0:0,0:5,5:48,48 chr5 21075 . C G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:27,27:0,0:0,0 44:0:0:0:0,0:41,41:3,3:0,0 chr5 21089 . T G . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:0,0:25,25 43:0:0:0:0,0:0,0:2,2:41,41 chr5 21101 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:27,27:0,0:0,0 50:0:0:0:0,0:49,49:0,0:1,1 chr5 21107 . A G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:26,26:0,0:0,0:3,3 51:0:0:0:48,48:0,0:3,3:0,0 chr5 21272 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:0,0:27,27 50:0:0:0:0,0:4,4:0,0:46,46 chr5 21300 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:28,28:0,0:0,0:4,4 52:0:0:0:45,45:0,0:0,0:7,7 chr5 21345 . A C . PASS NT=ref;QSS=20;QSS_NT=20;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:27,27:0,0:0,0:0,0 48:0:0:0:41,41:7,7:0,0:0,0 chr5 21474 . G A . PASS NT=ref;QSS=20;QSS_NT=20;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:0,0:38,38:0,0 53:0:0:0:3,3:0,0:50,50:0,0 chr5 21482 . G A,T . QSS_ref NT=het;QSS=47;QSS_NT=7;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:3,3:0,0:34,34:0,0 54:0:0:0:0,0:0,0:51,51:3,3 chr5 21499 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 43:0:0:0:0,0:39,39:0,0:4,4 54:0:0:0:2,2:52,52:0,0:0,0 chr5 21514 . T G . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 43:0:0:0:0,0:0,0:0,0:43,43 51:0:0:0:0,0:0,0:1,1:50,50 chr5 21526 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:0,0:37,37:0,0:5,5 56:0:0:0:0,0:56,56:0,0:0,0 chr5 21557 . C A,T . QSS_ref NT=het;QSS=9;QSS_NT=3;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:0,0:37,37:0,0:2,2 54:0:0:0:2,2:52,52:0,0:0,0 chr5 21581 . G A,T . QSS_ref NT=het;QSS=135;QSS_NT=45;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:25,25:5,5 54:0:0:0:7,7:0,0:47,47:0,0 chr5 21628 . G T . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:1,1:27,27:0,0 49:0:0:0:0,0:0,0:47,47:2,2 chr5 21644 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:3,3:0,0:26,26 50:0:0:0:4,4:0,0:0,0:46,46 chr5 21660 . C A . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:29,29:0,0:0,0 46:0:0:0:3,3:43,43:0,0:0,0 chr5 21687 . T A,C . QSS_ref NT=het;QSS=4;QSS_NT=4;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:3,3:0,0:31,31 46:0:0:0:2,2:0,0:0,0:44,44 chr5 21764 . G C . QSS_ref NT=het;QSS=7;QSS_NT=7;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:2,2:0,0:25,25:0,0 51:0:0:0:0,0:5,5:46,46:0,0 chr5 21798 . G A,T . QSS_ref NT=het;QSS=188;QSS_NT=39;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:6,6:0,0:27,27:0,0 50:0:0:0:0,0:0,0:40,40:10,10 chr5 21960 . C T . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 19:0:0:0:0,0:19,19:0,0:0,0 51:0:0:0:0,0:50,50:0,0:1,1 chr5 21973 . A T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:23,23:0,0:0,0:0,0 49:0:0:0:45,45:0,0:0,0:4,4 chr5 22188 . C A . PASS NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:32,32:0,0:0,0 53:0:0:0:3,3:50,50:0,0:0,0 chr5 22215 . A C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:31,31:0,0:0,0:4,4 54:0:0:0:45,45:9,9:0,0:0,0 chr5 22243 . A C,G . QSS_ref NT=het;QSS=163;QSS_NT=35;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:27,27:5,5:0,0:0,0 48:0:0:0:40,40:0,0:8,8:0,0 chr5 22317 . G T . QSS_ref NT=ref;QSS=13;QSS_NT=11;SGT=GG->GT;SOMATIC;TQSS=2;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:5:0:0:0,0:1,1:21,21:0,0 53:14:0:0:0,0:0,0:35,38:4,4 chr5 22374 . A T . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:7:0:0:23,23:0,0:0,0:0,0 62:19:0:0:42,42:0,0:0,0:1,1 chr5 22386 . C G,T . QSS_ref NT=het;QSS=77;QSS_NT=46;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:8:0:0:0,0:20,20:4,4:0,0 60:19:0:0:0,0:34,34:0,0:7,7 chr5 22442 . A . . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=AA->AA;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:6:0:0:25,25:0,0:2,2:0,0 50:10:0:0:38,39:2,2:0,0:0,0 chr5 22463 . G C . PASS NT=ref;QSS=48;QSS_NT=48;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:5:0:0:0,0:0,0:29,29:0,0 55:2:0:0:0,0:22,22:31,31:0,0 chr5 22596 . C A,T . QSS_ref NT=het;QSS=12;QSS_NT=12;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:27,27:0,0:3,3 54:0:0:0:2,2:52,52:0,0:0,0 chr5 22627 . A C . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:31,31:0,0:0,0:0,0 62:0:0:0:59,59:3,3:0,0:0,0 chr5 22640 . T C,G . QSS_ref NT=het;QSS=93;QSS_NT=35;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:4,4:28,28 67:0:0:0:0,0:5,5:0,0:62,62 chr5 22664 . A T . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:27,27:1,1:0,0:0,0 67:0:0:0:66,66:0,0:0,0:1,1 chr5 22708 . A G . PASS NT=ref;QSS=18;QSS_NT=18;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:33,33:0,0:0,0:0,0 56:6:0:0:47,47:0,0:3,3:0,0 chr5 22733 . A G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:2:0:0:24,24:0,0:0,0:5,5 51:8:0:0:27,27:0,0:16,16:0,0 chr5 22819 . T G . PASS NT=ref;QSS=16;QSS_NT=16;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:4:0:0:0,0:1,1:0,0:26,26 62:9:0:0:0,0:0,0:6,6:47,47 chr5 22863 . C G,T . QSS_ref NT=het;QSS=105;QSS_NT=52;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:5:0:0:0,0:22,22:7,7:0,0 53:8:0:0:0,0:41,41:0,0:4,4 chr5 22956 . T C,G . QSS_ref NT=het;QSS=722;QSS_NT=71;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:6:0:0:0,0:0,0:19,19:15,15 58:9:0:0:0,0:31,31:0,0:18,18 chr5 23090 . C T . BCNoise;QSS_ref NT=ref;QSS=13;QSS_NT=12;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:15:0:0:1,1:21,21:0,0:0,0 59:24:0:0:0,0:32,34:0,0:3,5 chr5 23136 . T C,G . BCNoise;QSS_ref NT=het;QSS=63;QSS_NT=50;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:11:0:0:0,0:4,4:0,0:14,14 59:26:0:0:0,0:0,0:6,6:27,27 chr5 23221 . A C,G . QSS_ref NT=het;QSS=130;QSS_NT=45;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:8:0:0:21,21:0,0:6,6:0,0 50:4:0:0:36,36:10,10:0,0:0,0 chr5 23373 . T G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:0,0:23,23 57:0:0:0:0,0:0,0:1,1:56,56 chr5 23382 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:3,3:20,20 57:0:0:0:6,6:0,0:0,0:51,51 chr5 23419 . A G . QSS_ref NT=ref;QSS=11;QSS_NT=11;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 19:0:0:0:19,19:0,0:0,0:0,0 57:0:0:0:56,56:0,0:1,1:0,0 chr5 23421 . A C . QSS_ref NT=ref;QSS=11;QSS_NT=11;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 19:0:0:0:19,19:0,0:0,0:0,0 56:0:0:0:54,54:2,2:0,0:0,0 chr5 23472 . C A . PASS NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:28,28:0,0:0,0 54:0:0:0:1,1:53,53:0,0:0,0 chr5 23477 . T C,G . QSS_ref NT=het;QSS=125;QSS_NT=41;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:5,5:0,0:24,24 51:0:0:0:0,0:0,0:5,5:46,46 chr5 23519 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:23,23:0,0:11,11 58:0:0:0:0,0:46,46:0,0:12,12 chr5 23600 . A C,G . QSS_ref NT=het;QSS=32;QSS_NT=31;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 43:0:0:0:35,35:0,0:8,8:0,0 49:0:0:0:46,46:3,3:0,0:0,0 chr5 23639 . T G . PASS NT=ref;QSS=65;QSS_NT=65;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:0,0:0,0:0,0:42,42 46:0:0:0:0,0:0,0:19,19:27,27 chr5 23724 . T C,G . QSS_ref NT=het;QSS=467;QSS_NT=66;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:12,12:0,0:20,20 42:0:0:0:0,0:0,0:13,13:29,29 chr5 23814 . T C . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:0,0:26,26 53:0:0:0:0,0:4,4:0,0:49,49 chr5 23852 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:1,1:0,0:0,0:29,29 55:0:0:0:0,0:0,0:7,7:48,48 chr5 23878 . A C,T . QSS_ref NT=het;QSS=89;QSS_NT=45;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:20,20:0,0:0,0:4,4 45:0:0:0:37,37:8,8:0,0:0,0 chr5 23932 . C T . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:25,25:0,0:0,0 39:0:0:0:0,0:28,28:0,0:11,11 chr5 24061 . A G,T . QSS_ref NT=het;QSS=194;QSS_NT=58;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:21,21:0,0:0,0:7,7 48:0:0:0:38,38:0,0:10,10:0,0 chr5 24161 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:2,2:0,0:29,29 52:0:0:0:4,4:0,0:0,0:48,48 chr5 24201 . G A . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:25,25:0,0 45:0:0:0:1,1:0,0:44,44:0,0 chr5 24203 . T G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:1,1:0,0:23,23 45:0:0:0:0,0:0,0:3,3:42,42 chr5 24261 . T A,C . QSS_ref NT=het;QSS=12;QSS_NT=12;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:3,3:0,0:0,0:22,22 36:0:0:0:0,0:2,2:0,0:34,34 chr5 24304 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:0,0:30,30 34:0:0:0:1,1:0,0:0,0:33,33 chr5 24306 . G A,T . QSS_ref NT=het;QSS=50;QSS_NT=32;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:3,3:0,0:27,27:0,0 32:0:0:0:0,0:0,0:29,29:3,3 chr5 24515 . A G . QSS_ref NT=het;QSS=3;QSS_NT=2;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:28,28:0,0:0,0:2,2 46:0:0:0:40,40:0,0:6,6:0,0 chr5 24560 . T C,G . QSS_ref NT=het;QSS=14;QSS_NT=12;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:3,3:0,0:30,30 42:0:0:0:0,0:0,0:2,2:40,40 chr5 24614 . T A,G . QSS_ref NT=het;QSS=198;QSS_NT=62;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:9,9:0,0:0,0:19,19 36:0:0:0:0,0:0,0:6,6:30,30 chr5 24864 . C G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:28,28:0,0:0,0 57:0:0:0:0,0:56,56:1,1:0,0 chr5 24870 . G A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:4,4:25,25:0,0 55:0:0:0:13,13:0,0:42,42:0,0 chr5 24967 . G A,T . QSS_ref NT=het;QSS=326;QSS_NT=68;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:12,12:0,0:18,18:0,0 44:0:0:0:0,0:0,0:35,35:9,9 chr5 25035 . T G . QSS_ref NT=ref;QSS=6;QSS_NT=6;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:0,0:33,33 43:0:0:0:0,0:0,0:10,10:33,33 chr5 25095 . C G,T . QSS_ref NT=het;QSS=119;QSS_NT=42;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:30,30:6,6:0,0 39:0:0:0:0,0:35,35:0,0:4,4 chr5 25131 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:31,31:0,0:1,1:0,0 49:0:0:0:49,49:0,0:0,0:0,0 chr5 25163 . G A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:1:0:0:0,0:0,0:33,33:4,4 55:2:0:0:6,6:0,0:47,47:0,0 chr5 25330 . C A . QSS_ref NT=het;QSS=4;QSS_NT=4;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:28,28:2,2:0,0 48:0:0:0:3,3:45,45:0,0:0,0 chr5 25351 . A G,T . QSS_ref NT=het;QSS=77;QSS_NT=27;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:28,28:0,0:0,0:4,4 51:0:0:0:45,45:0,0:6,6:0,0 chr5 25394 . G C . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:30,30:0,0 43:0:0:0:0,0:2,2:41,41:0,0 chr5 25407 . A G,T . QSS_ref NT=het;QSS=316;QSS_NT=63;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:22,22:0,0:10,10:0,0 44:0:0:0:36,36:0,0:0,0:8,8 chr5 25511 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:33,33:0,0:0,0:0,0 54:0:0:0:53,53:1,1:0,0:0,0 chr5 25519 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:33,33:0,0:0,0:0,0 54:0:0:0:46,46:8,8:0,0:0,0 chr5 25591 . C G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:28,28:4,4:0,0 50:0:0:0:0,0:45,45:0,0:5,5 chr5 25654 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 49:0:0:0:39,39:0,0:10,10:0,0 54:0:0:0:49,49:5,5:0,0:0,0 chr5 25702 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 51:0:0:0:51,51:0,0:0,0:0,0 58:0:0:0:56,56:2,2:0,0:0,0 chr5 25712 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 52:0:0:0:0,0:5,5:0,0:47,47 55:0:0:0:0,0:0,0:0,0:55,55 chr5 25730 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 47:0:0:0:0,0:0,0:47,47:0,0 56:0:0:0:4,4:0,0:52,52:0,0 chr5 25759 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:4,4:37,37:0,0:0,0 58:0:0:0:0,0:57,57:1,1:0,0 chr5 25787 . A C,T . QSS_ref NT=het;QSS=12;QSS_NT=11;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:33,33:0,0:0,0:2,2 61:0:0:0:59,59:2,2:0,0:0,0 chr5 25893 . A C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:26,26:1,1:0,0:0,0 53:0:0:0:53,53:0,0:0,0:0,0 chr5 25905 . C A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:26,26:0,0:0,0 49:0:0:0:1,1:48,48:0,0:0,0 chr5 26043 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:34,34:0,0:0,0:2,2 53:0:0:0:46,46:0,0:0,0:7,7 chr5 26075 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:0,0:34,34 47:0:0:0:1,1:0,0:0,0:46,46 chr5 26090 . A G . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:31,31:0,0:0,0:0,0 50:0:0:0:49,49:0,0:1,1:0,0 chr5 26135 . A C,G . QSS_ref NT=het;QSS=59;QSS_NT=22;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:31,31:3,3:0,0:0,0 41:0:0:0:37,37:0,0:4,4:0,0 chr5 26168 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:0,0:37,37 44:0:0:0:1,1:0,0:0,0:43,43 chr5 26179 . C A,T . QSS_ref NT=het;QSS=82;QSS_NT=14;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:5,5:37,37:0,0:0,0 43:0:0:0:0,0:39,39:0,0:4,4 chr5 26221 . A C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:31,31:0,0:0,0:8,8 43:0:0:0:33,33:10,10:0,0:0,0 chr5 26388 . A T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:31,31:0,0:0,0:0,0 48:0:0:0:46,46:0,0:0,0:2,2 chr5 26424 . T C,G . QSS_ref NT=het;QSS=46;QSS_NT=35;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:3,3:22,22 44:0:0:0:0,0:5,5:0,0:39,39 chr5 26475 . T C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:0,0:0,0:21,21 50:0:0:0:0,0:3,3:0,0:47,47 chr5 26528 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:31,31:0,0 50:0:0:0:0,0:0,0:46,46:4,4 chr5 26554 . G A,T . QSS_ref NT=het;QSS=8;QSS_NT=8;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:4,4:0,0:28,28:0,0 44:0:0:0:0,0:0,0:42,42:2,2 chr5 26585 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:37,37:0,0:0,0 43:0:0:0:0,0:40,40:0,0:3,3 chr5 26610 . T . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=TT->TT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:0,0:0,0:38,38 44:0:0:0:0,0:2,2:0,0:42,42 chr5 26635 . A C,T . QSS_ref NT=het;QSS=308;QSS_NT=50;SGT=AC->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:29,29:10,10:0,0:0,0 46:0:0:0:38,38:0,0:0,0:8,8 chr5 26695 . A C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:2:0:0:37,37:0,0:0,0:0,0 50:7:0:0:40,40:3,3:0,0:0,0 chr5 26707 . T A . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:2:0:0:0,0:0,0:0,0:33,33 49:9:0:0:4,4:0,0:0,0:36,36 chr5 26783 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:9:0:0:4,4:20,20:0,0:0,0 51:13:0:0:0,0:33,33:0,0:5,6 chr5 26813 . A G,T . QSS_ref NT=het;QSS=52;QSS_NT=42;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:8:0:0:19,19:0,0:0,0:3,3 48:6:0:0:35,35:0,0:7,7:0,0 chr5 26856 . T A . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:1:0:0:0,0:1,1:0,0:32,32 46:0:0:0:6,6:0,0:0,0:40,40 chr5 26906 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 46:0:0:0:41,41:0,0:5,5:0,0 38:0:0:0:33,33:5,5:0,0:0,0 chr5 26934 . C A,G . QSS_ref NT=het;QSS=36;QSS_NT=24;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:3,3:30,30:0,0:0,0 45:0:0:0:0,0:42,42:3,3:0,0 chr5 26977 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:27,27:2,2 43:0:0:0:0,0:0,0:43,43:0,0 chr5 26991 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:2,2:0,0:0,0:28,28 50:0:0:0:0,0:0,0:0,0:50,50 chr5 26999 . G C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:24,24:3,3 52:0:0:0:0,0:6,6:46,46:0,0 chr5 27062 . C G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:25,29:0,0:0,0 54:0:0:0:0,0:53,53:1,1:0,0 chr5 27074 . T A,C . QSS_ref NT=het;QSS=223;QSS_NT=62;SGT=CT->AT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:8,8:0,0:15,20 52:0:0:0:7,7:0,0:0,0:45,45 chr5 27163 . G A,C . QSS_ref NT=het;QSS=193;QSS_NT=47;SGT=AG->CG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:9,9:0,0:15,29:0,0 35:0:0:0:0,0:6,6:29,29:0,0 chr5 27229 . C G,T . QSS_ref NT=het;QSS=10;QSS_NT=10;SGT=CT->CG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:0,0:17,28:0,0:3,3 52:0:0:0:0,0:50,50:2,2:0,0 chr5 27332 . T C . QSS_ref NT=ref;QSS=13;QSS_NT=13;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:0,0:0,0:0,0:20,38 59:0:0:0:0,0:7,7:0,0:52,52 chr5 27459 . T G . QSS_ref NT=conflict;QSS=3070;QSS_NT=0;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:2,2:0,0:24,34 49:0:0:0:0,0:0,0:2,2:47,47 chr5 27519 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 18:0:0:0:0,0:2,2:0,0:16,30 46:0:0:0:4,4:0,0:0,0:42,42 chr5 27611 . C T . QSS_ref NT=conflict;QSS=4;QSS_NT=0;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 0:0:0:0:0,2:0,15:0,0:0,0 50:0:0:0:0,0:48,48:0,0:2,2 chr5 27622 . A C . QSS_ref NT=conflict;QSS=4;QSS_NT=0;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 0:0:0:0:0,12:0,0:0,0:0,5 50:0:0:0:44,44:6,6:0,0:0,0 chr5 27673 . C G . QSS_ref NT=conflict;QSS=1;QSS_NT=0;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 0:0:0:0:0,6:0,8:0,0:0,0 49:0:0:0:0,0:48,48:1,1:0,0 chr5 27758 . G C . QSS_ref NT=conflict;QSS=3070;QSS_NT=0;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 0:0:0:0:0,0:0,4:0,12:0,0 51:0:0:0:0,0:4,4:47,47:0,0 chr5 27779 . T G . QSS_ref NT=ref;QSS=3;QSS_NT=1;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 0:0:0:0:0,0:0,0:0,0:0,18 39:0:0:0:0,0:0,0:6,6:33,33 chr6 397 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 16:0:0:0:0,0:0,0:0,0:16,16 49:0:0:0:1,1:0,0:0,0:48,48 chr6 417 . G A . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 18:0:0:0:0,0:0,0:18,18:0,0 51:0:0:0:5,5:0,0:46,46:0,0 chr6 434 . T C . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 12:0:0:0:0,0:0,0:0,0:12,12 56:0:0:0:0,0:1,1:0,0:55,55 chr6 448 . A C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 11:0:0:0:11,11:0,0:0,0:0,0 58:0:0:0:51,51:7,7:0,0:0,0 chr6 478 . G C . QSS_ref NT=ref;QSS=9;QSS_NT=9;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 14:0:0:0:0,0:0,0:14,14:0,0 69:0:0:0:0,0:1,1:68,68:0,0 chr6 496 . A G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 14:0:0:0:14,14:0,0:0,0:0,0 67:0:0:0:65,65:0,0:2,2:0,0 chr6 607 . C G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:23,23:3,3:0,0 59:0:0:0:0,0:51,51:0,0:8,8 chr6 643 . G . . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=GG->GG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:27,27:0,0 47:0:0:0:0,0:0,0:45,45:2,2 chr6 663 . T C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:3,3:0,0:28,28 47:0:0:0:0,0:0,0:6,6:41,41 chr6 732 . T A . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:7:0:0:0,0:0,0:0,0:30,30 52:4:0:0:4,4:0,0:0,0:44,44 chr6 748 . G C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:9:0:0:1,1:0,0:27,27:0,0 49:10:0:0:0,0:3,3:36,38:0,0 chr6 772 . A C,T . BCNoise;QSS_ref NT=het;QSS=61;QSS_NT=50;SGT=AT->AC;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:16:0:0:18,18:0,0:0,0:3,3 53:34:0:0:14,18:5,6:0,0:0,0 chr6 834 . A C,G . QSS_ref NT=het;QSS=84;QSS_NT=51;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:4:0:0:24,24:0,0:3,3:0,0 55:10:0:0:42,42:3,3:0,0:0,0 chr6 853 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:3:0:0:0,0:0,0:0,0:24,24 56:7:0:0:0,0:0,0:3,3:46,46 chr6 860 . A C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:2:0:0:24,24:1,1:0,0:0,0 55:7:0:0:47,47:1,1:0,0:0,0 chr6 885 . C A,T . QSS_ref NT=het;QSS=183;QSS_NT=47;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:6,6:23,23:0,0:0,0 53:0:0:0:0,0:44,44:0,0:9,9 chr6 953 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:29,29:0,0:4,4:0,0 52:0:0:0:48,48:0,0:4,4:0,0 chr6 1003 . C G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:21,21:5,5:0,0 52:0:0:0:0,0:48,48:0,0:4,4 chr6 1049 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:6,6:0,0:0,0:23,23 50:0:0:0:6,6:0,0:0,0:44,44 chr6 1082 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:0,0:30,30 50:0:0:0:0,0:1,1:0,0:49,49 chr6 1090 . T A,G . QSS_ref NT=het;QSS=70;QSS_NT=43;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:5,5:26,26 49:0:0:0:3,3:0,0:0,0:46,46 chr6 1156 . T A,C . QSS_ref NT=het;QSS=29;QSS_NT=29;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:3,3:0,0:0,0:23,23 55:0:0:0:0,0:2,2:0,0:53,53 chr6 1194 . G A,C . QSS_ref NT=het;QSS=53;QSS_NT=31;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:3,3:0,0:24,24:0,0 68:0:0:0:0,0:7,7:61,61:0,0 chr6 1247 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:0,0:32,32 68:0:0:0:3,3:0,0:0,0:65,65 chr6 1268 . T A,C . QSS_ref NT=het;QSS=44;QSS_NT=21;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:4,4:0,0:32,32 58:0:0:0:3,3:0,0:0,0:55,55 chr6 1542 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:1,1:0,0:22,22:0,0 126:0:0:0:0,0:0,0:126,202:0,0 chr6 1565 . T C . 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QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:7,7:26,26 265:0:0:0:0,0:0,0:0,0:265,265 chr6 2988 . A G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:25,25:0,0:1,1:0,0 264:0:0:0:264,264:0,0:0,0:0,0 chr6 3087 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:0,0:38,38:0,0:2,2 259:0:0:0:0,0:259,259:0,0:0,0 chr6 3100 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:32,32:0,0:0,0:7,7 252:0:0:0:252,252:0,0:0,0:0,0 chr6 3189 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:0,0:34,34:4,4 248:0:0:0:0,0:0,0:248,248:0,0 chr6 3213 . G T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:0:0:0:0,0:0,0:38,38:4,4 258:0:0:0:0,0:0,0:258,258:0,0 chr6 3235 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:0,0:4,4:0,0:35,35 263:0:0:0:0,0:0,0:0,0:263,263 chr6 3255 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:3,3:0,0:0,0:36,36 258:0:0:0:0,0:0,0:0,0:258,258 chr6 3282 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:16,16:25,25:0,0:0,0 268:0:0:0:0,0:268,268:0,0:0,0 chr6 3361 . C A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:15,15:0,0:15,15 259:0:0:0:0,0:259,259:0,0:0,0 chr6 3452 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:23,23:0,0:6,6:0,0 239:0:0:0:239,239:0,0:0,0:0,0 chr6 3523 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:1,1:0,0:0,0:26,26 260:0:0:0:0,0:0,0:0,0:260,261 chr6 3592 . A T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:36,36:0,0:0,0:2,2 234:0:0:0:234,243:0,0:0,0:0,0 chr6 3628 . C T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:0,0:34,34:0,0:5,5 216:0:0:0:0,0:216,232:0,0:0,0 chr6 3736 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:26,26:0,0:11,11:0,0 187:0:0:0:187,240:0,0:0,0:0,0 chr6 3927 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:0,0:30,30 59:0:0:0:0,0:0,0:1,2:58,58 chr6 4194 . T C . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:12,12:0,0:23,23 52:0:0:0:0,0:0,0:0,0:52,52 chr6 4244 . A C . QSS_ref NT=het;QSS=4;QSS_NT=4;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:18,18:13,13:0,0:0,0 43:0:0:0:43,43:0,0:0,0:0,0 chr6 4320 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:3,3:29,29 63:0:0:0:0,0:0,0:2,2:61,61 chr6 4340 . A G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:30,30:0,0:2,2:0,0 66:0:0:0:62,62:0,0:4,4:0,0 chr6 4377 . C A,G . QSS_ref NT=het;QSS=137;QSS_NT=56;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:18,18:6,6:0,0 56:0:0:0:5,5:51,51:0,0:0,0 chr6 4923 . T A . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 20:0:0:0:0,0:0,0:0,0:20,20 44:0:0:0:1,1:0,0:0,0:43,43 chr6 4933 . C G,T . QSS_ref NT=het;QSS=246;QSS_NT=64;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:14,14:0,0:7,7 44:0:0:0:0,0:36,36:8,8:0,0 chr6 5072 . T A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:3,3:0,0:0,0:23,23 68:0:0:0:0,0:6,6:0,0:62,62 chr6 5097 . G T . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:25,25:0,0 57:0:0:0:0,0:0,0:56,56:1,1 chr6 5124 . C A,T . QSS_ref NT=het;QSS=101;QSS_NT=20;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:0,0:31,31:0,0:4,4 63:0:0:0:9,9:54,54:0,0:0,0 chr6 5210 . C T . QSS_ref NT=ref;QSS=1;QSS_NT=0;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:2,2:35,35:0,0:0,0 63:0:0:0:0,0:60,60:0,0:3,3 chr6 5246 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:1,1:32,32 57:0:0:0:0,0:1,1:0,0:56,56 chr6 5266 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:0,0:0,0:0,0:36,36 54:0:0:0:0,0:0,0:1,1:53,53 chr6 5293 . A G . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:0:0:0:36,36:0,0:0,0:0,0 50:0:0:0:49,49:0,0:1,1:0,0 chr6 5294 . A T . PASS NT=ref;QSS=16;QSS_NT=16;SGT=AA->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 35:0:0:0:35,35:0,0:0,0:0,0 49:0:0:0:46,46:0,0:0,0:3,3 chr6 5308 . T A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:2,2:0,0:0,0:28,28 50:0:0:0:0,0:0,0:7,7:43,43 chr6 5415 . A G . BCNoise;QSS_ref NT=ref;QSS=11;QSS_NT=11;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:7:0:0:17,17:0,0:0,0:0,0 61:33:0:0:27,27:0,0:1,1:0,0 chr6 5479 . G A . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:2:0:0:0,0:0,0:21,21:0,0 63:6:0:0:1,1:0,0:56,56:0,0 chr6 5594 . C G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:28,28:0,0:0,0 55:0:0:0:0,0:54,54:1,1:0,0 chr6 5600 . A G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:31,31:0,0:0,0:0,0 52:0:0:0:47,47:0,0:5,5:0,0 chr6 5631 . G C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:0,0:24,24:5,5 48:0:0:0:0,0:4,4:44,44:0,0 chr6 5914 . A C,G . QSS_ref NT=het;QSS=118;QSS_NT=45;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:2:0:0:26,26:0,0:4,4:0,0 54:6:0:0:44,44:4,4:0,0:0,0 chr6 5946 . A C,G . QSS_ref NT=het;QSS=28;QSS_NT=28;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:19,19:0,0:6,6:0,0 54:1:0:0:51,51:2,2:0,0:0,0 chr6 6062 . C G,T . QSS_ref NT=het;QSS=289;QSS_NT=35;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 41:0:0:0:0,0:33,33:8,8:0,0 58:0:0:0:0,0:46,46:0,0:12,12 chr6 6199 . C T . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:0,0:39,39:0,0:0,0 60:0:0:0:0,0:58,58:0,0:2,2 chr6 6207 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:0,0:0,0:0,0:39,39 57:0:0:0:1,1:0,0:0,0:56,56 chr6 6211 . G A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:0:0:0:0,0:0,0:30,30:9,9 56:0:0:0:3,3:0,0:53,53:0,0 chr6 6244 . G C,T . QSS_ref NT=het;QSS=296;QSS_NT=66;SGT=CG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:9,9:18,18:0,0 61:0:0:0:0,0:0,0:46,46:15,15 chr6 6344 . C A,T . QSS_ref NT=het;QSS=102;QSS_NT=39;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:4,4:29,29:0,0:0,0 50:0:0:0:0,0:45,45:0,0:5,5 chr6 6372 . G A,C . QSS_ref NT=het;QSS=106;QSS_NT=41;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:4,4:25,25:0,0 45:0:0:0:8,8:0,0:37,37:0,0 chr6 6529 . T A . QSS_ref NT=ref;QSS=1;QSS_NT=1;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:6:0:0:0,0:0,0:1,1:19,21 56:17:0:0:5,6:0,0:0,0:34,40 chr6 6623 . T C,G . QSS_ref NT=het;QSS=387;QSS_NT=68;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:13,13:24,24 49:0:0:0:0,0:11,11:0,0:38,38 chr6 6840 . G A,C . QSS_ref NT=het;QSS=48;QSS_NT=34;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:3,3:30,30:0,0 47:0:0:0:6,6:0,0:41,41:0,0 chr6 6898 . C G,T . QSS_ref NT=het;QSS=325;QSS_NT=67;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:19,19:0,0:10,10 50:0:0:0:0,0:41,41:9,9:0,0 chr6 7035 . T A,G . QSS_ref NT=het;QSS=121;QSS_NT=49;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:2:0:0:4,4:0,0:0,0:21,21 50:11:0:0:0,0:0,0:4,4:35,35 chr6 7180 . A C . PASS NT=ref;QSS=19;QSS_NT=19;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:33,33:0,0:0,0:0,0 63:0:0:0:57,57:6,6:0,0:0,0 chr6 7241 . C A . QSS_ref NT=het;QSS=6;QSS_NT=6;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:26,26:0,0:2,2 61:0:0:0:2,2:59,59:0,0:0,0 chr6 7268 . A G . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:24,24:0,0:0,0:0,0 56:0:0:0:55,55:0,0:1,1:0,0 chr6 7329 . A G,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:20,20:0,0:0,0:5,5 53:0:0:0:46,46:0,0:7,7:0,0 chr6 7398 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:0,0:0,0:27,27 51:0:0:0:0,0:15,15:0,0:36,36 chr6 7490 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 42:3:0:0:0,0:0,0:39,39:0,0 58:10:0:0:5,5:0,0:43,43:0,0 chr6 7567 . G T . QSS_ref;BCNoise NT=ref;QSS=5;QSS_NT=5;SGT=GG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:16:0:0:0,0:0,0:24,25:0,0 62:35:0:0:0,0:0,0:24,25:3,3 chr6 7568 . C A . QSS_ref;BCNoise NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:16:0:0:0,0:21,22:0,0:0,0 60:35:0:0:1,1:24,25:0,0:0,0 chr6 7569 . T A . BCNoise;QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:16:0:0:0,0:0,0:0,0:20,21 59:35:0:0:0,0:0,0:1,1:23,24 chr6 7636 . C T . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CT->CT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:9:0:0:0,0:23,23:0,0:0,0 51:19:0:0:0,0:29,29:0,0:3,4 chr6 7646 . G A,T . QSS_ref NT=het;QSS=5;QSS_NT=5;SGT=GT->AG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:9:0:0:0,0:0,0:20,20:2,2 46:16:0:0:2,2:0,0:28,29:0,0 chr6 7683 . T A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:3:0:0:5,5:0,0:0,0:28,28 52:6:0:0:3,3:0,0:0,0:43,43 chr6 7757 . G A,T . QSS_ref NT=het;QSS=165;QSS_NT=37;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:28,28:6,6 51:0:0:0:9,9:0,0:42,42:0,0 chr6 7904 . C G,T . QSS_ref NT=het;QSS=86;QSS_NT=43;SGT=CG->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:21,21:4,4:0,0 56:0:0:0:0,0:47,47:0,0:9,9 chr6 7968 . C A,T . QSS_ref NT=het;QSS=98;QSS_NT=41;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:6:0:0:4,4:26,26:0,0:0,0 60:13:0:0:0,0:43,43:0,0:4,4 chr6 8007 . A C,G . BCNoise;QSS_ref NT=het;QSS=60;QSS_NT=59;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 39:15:0:0:13,15:0,0:11,14:0,0 53:28:0:0:22,27:3,5:0,0:0,0 chr6 8105 . G A,T . QSS_ref NT=het;QSS=65;QSS_NT=29;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:4,4:0,0:27,27:0,0 54:0:0:0:0,0:0,0:51,51:3,3 chr6 8129 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:18,18:0,0:10,10:0,0 51:0:0:0:39,39:12,12:0,0:0,0 chr6 8213 . C G . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:2:0:0:1,1:34,34:0,0:0,0 56:9:0:0:0,0:42,42:5,5:0,0 chr6 8248 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:9:0:0:0,0:31,31:0,0:0,0 54:17:0:0:2,2:35,35:0,0:0,0 chr6 8261 . T A,G . QSS_ref NT=het;QSS=81;QSS_NT=43;SGT=AT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:9:0:0:3,3:0,0:0,0:22,22 58:22:0:0:0,0:0,0:13,13:23,24 chr6 8351 . T A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:1:0:0:0,0:0,0:0,0:21,21 55:3:0:0:1,1:0,0:0,0:51,51 chr6 8388 . A T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:26,26:0,0:0,0:1,1 57:0:0:0:56,56:0,0:0,0:1,1 chr6 8428 . G A,T . QSS_ref NT=het;QSS=85;QSS_NT=36;SGT=GT->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:24,24:4,4 55:0:0:0:10,10:0,0:45,45:0,0 chr6 8529 . C A . PASS NT=ref;QSS=17;QSS_NT=17;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:32,32:0,0:0,0 44:0:0:0:1,1:43,43:0,0:0,0 chr6 8614 . C A . PASS NT=ref;QSS=20;QSS_NT=20;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:27,27:0,0:0,0 48:0:0:0:7,7:41,41:0,0:0,0 chr6 8709 . T A . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:0,0:0,0:33,33 58:0:0:0:5,5:0,0:0,0:53,53 chr6 8722 . G A,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:9,9:0,0:28,28:0,0 62:0:0:0:0,0:0,0:52,52:10,10 chr6 8845 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:0,0:2,2:32,32 33:0:0:0:0,0:0,0:0,0:33,33 chr6 8861 . C . . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CC->CC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:1,1:30,30:0,0:0,0 36:0:0:0:0,0:34,34:0,0:2,2 chr6 8891 . T C,G . QSS_ref NT=het;QSS=144;QSS_NT=45;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:5,5:0,0:22,22 48:0:0:0:0,0:0,0:7,7:41,41 chr6 8943 . A C,G . QSS_ref NT=het;QSS=44;QSS_NT=33;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:3:0:0:23,23:0,0:3,3:0,0 48:1:0:0:38,38:9,9:0,0:0,0 chr6 9012 . A T . BCNoise;QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:13:0:0:22,29:0,0:0,0:1,1 52:27:0:0:25,35:0,0:0,0:0,0 chr6 9125 . T C . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:0,0:28,28 38:0:0:0:0,0:6,6:0,0:32,32 chr6 9210 . C G . QSS_ref NT=het;QSS=5;QSS_NT=5;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:25,25:0,0:2,2 52:0:0:0:0,0:49,49:3,3:0,0 chr6 9234 . C A,G . QSS_ref NT=het;QSS=58;QSS_NT=28;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:3,3:25,25:0,0:0,0 55:0:0:0:0,0:50,50:5,5:0,0 chr6 9272 . T A,G . QSS_ref NT=het;QSS=186;QSS_NT=41;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:0,0:0,0:6,6:26,26 56:0:0:0:6,6:0,0:0,0:50,50 chr6 9313 . C A,T . QSS_ref NT=het;QSS=191;QSS_NT=34;SGT=AC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:7,7:33,33:0,0:0,0 51:0:0:0:0,0:42,42:0,0:9,9 chr6 9432 . T C . QSS_ref NT=ref;QSS=13;QSS_NT=13;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:1,1:0,0:0,0:23,23 40:0:0:0:0,0:2,2:0,0:38,38 chr6 9441 . C G,T . QSS_ref NT=het;QSS=418;QSS_NT=69;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:15,15:0,0:10,10 40:0:0:0:0,0:24,24:16,16:0,0 chr6 9544 . C T . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:28,28:0,0:0,0 47:0:0:0:0,0:45,45:0,0:2,2 chr6 9556 . T G . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:1,1:0,0:26,26 53:0:0:0:0,0:0,0:1,1:52,52 chr6 9574 . A G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:31,31:0,0:0,0:0,0 57:1:0:0:55,55:0,0:1,1:0,0 chr6 9583 . A C,G . QSS_ref NT=het;QSS=94;QSS_NT=56;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:23,23:9,9:0,0:0,0 54:4:0:0:47,47:0,0:3,3:0,0 chr6 9638 . T A . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:7:0:0:0,0:0,0:0,0:22,22 59:16:0:0:1,1:0,0:0,0:42,43 chr6 9647 . G C . QSS_ref;BCNoise NT=ref;QSS=10;QSS_NT=10;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:13:0:0:0,0:0,0:16,21:0,0 59:23:0:0:0,0:2,2:34,39:0,0 chr6 9650 . G C . QSS_ref;BCNoise NT=ref;QSS=2;QSS_NT=2;SGT=CG->CG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:14:0:0:0,0:0,0:16,21:0,0 57:25:0:0:0,0:1,1:31,38:0,0 chr6 9651 . A G . BCNoise;QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AA->AG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:14:0:0:16,21:0,0:0,0:0,0 57:25:0:0:30,37:0,0:2,2:0,0 chr6 9655 . G A,T . BCNoise;QSS_ref NT=het;QSS=67;QSS_NT=49;SGT=AG->GT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:14:0:0:3,3:0,0:14,19:0,0 52:25:0:0:0,0:0,0:21,28:6,6 chr6 9699 . G C,T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:5:0:0:0,0:0,0:20,20:5,5 54:9:0:0:0,0:11,11:34,35:0,0 chr6 9825 . C G . QSS_ref NT=het;QSS=10;QSS_NT=2;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:2,2:35,35:0,0:0,0 43:0:0:0:0,0:41,41:2,2:0,0 chr6 9856 . T A,G . QSS_ref NT=het;QSS=5;QSS_NT=5;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:4,4:33,33 52:0:0:0:2,2:0,0:0,0:50,50 chr6 9925 . T C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:0,0:0,0:23,23 55:0:0:0:0,0:11,11:0,0:44,44 chr6 10021 . C G . QSS_ref NT=ref;QSS=13;QSS_NT=13;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:1,1:23,23:0,0:0,0 53:0:0:0:0,0:50,50:3,3:0,0 chr6 10040 . G C . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:25,25:0,0 54:0:0:0:0,0:3,3:51,51:0,0 chr6 10080 . C G,T . QSS_ref NT=het;QSS=79;QSS_NT=39;SGT=CT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:27,27:0,0:3,3 51:0:0:0:0,0:44,44:7,7:0,0 chr6 10122 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:1,1:27,27 54:0:0:0:0,0:0,0:6,6:48,48 chr6 10168 . T A,C . QSS_ref NT=het;QSS=102;QSS_NT=57;SGT=CT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:6,6:0,0:23,23 57:0:0:0:4,4:0,0:0,0:53,53 chr6 10180 . A C . PASS NT=ref;QSS=15;QSS_NT=15;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:27,27:0,0:1,1:0,0 58:0:0:0:56,56:2,2:0,0:0,0 chr6 10214 . C A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:23,23:0,0:2,2 52:0:0:0:3,3:49,49:0,0:0,0 chr6 10232 . G A,C . QSS_ref NT=het;QSS=20;QSS_NT=20;SGT=CG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:2,2:23,23:0,0 55:0:0:0:3,3:0,0:52,52:0,0 chr6 10250 . A C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:29,29:0,0:0,0:0,0 52:0:0:0:43,43:9,9:0,0:0,0 chr6 10322 . C G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:27,27:0,0:1,1 54:0:0:0:0,0:53,53:1,1:0,0 chr6 10345 . G A . QSS_ref NT=het;QSS=2;QSS_NT=2;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:0,0:0,0:26,26:2,2 46:0:0:0:5,5:0,0:41,41:0,0 chr6 10381 . C A . QSS_ref NT=ref;QSS=5;QSS_NT=5;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:0,0:33,33:0,0:0,0 50:0:0:0:1,1:49,49:0,0:0,0 chr6 10394 . A G,T . QSS_ref NT=het;QSS=268;QSS_NT=55;SGT=AG->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:0:0:0:24,24:0,0:9,9:0,0 51:0:0:0:42,42:0,0:0,0:9,9 chr6 10622 . C A,G . QSS_ref NT=het;QSS=244;QSS_NT=60;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:4:0:0:8,8:16,16:0,0:0,0 53:13:0:0:0,0:33,33:7,7:0,0 chr6 10788 . C T . QSS_ref NT=ref;QSS=14;QSS_NT=14;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:2:0:0:0,0:26,26:0,0:0,0 73:16:0:0:0,0:55,55:0,0:2,2 chr6 10792 . C A . PASS NT=ref;QSS=15;QSS_NT=15;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:3:0:0:0,0:28,28:0,0:0,0 72:17:0:0:2,2:53,53:0,0:0,0 chr6 10812 . C A,T . QSS_ref NT=het;QSS=106;QSS_NT=61;SGT=CT->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:3:0:0:0,0:20,20:0,0:6,6 67:19:0:0:4,4:44,44:0,0:0,0 chr6 10907 . C T . PASS NT=ref;QSS=16;QSS_NT=16;SGT=CC->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:4:0:0:0,0:28,28:1,1:0,0 51:10:0:0:0,0:37,37:0,0:4,4 chr6 10991 . G C . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=GG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:0,0:0,0:24,24:0,0 49:0:0:0:0,0:1,1:48,48:0,0 chr6 11198 . T A . BCNoise;QSS_ref NT=conflict;QSS=3070;QSS_NT=0;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:17:0:0:1,1:0,0:0,0:11,17 47:28:0:0:4,5:0,0:0,0:15,20 chr6 11264 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 36:5:0:0:0,0:0,0:0,0:31,31 38:2:0:0:0,0:0,0:5,5:31,31 chr6 11326 . G A . QSS_ref NT=het;QSS=4;QSS_NT=4;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:1:0:0:0,0:0,0:27,27:2,2 50:7:0:0:5,5:0,0:38,38:0,0 chr6 11362 . C A,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AC->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:5:0:0:5,5:18,18:0,0:0,0 63:20:0:0:0,0:32,35:11,11:0,0 chr6 11441 . A G,T . QSS_ref NT=het;QSS=244;QSS_NT=70;SGT=AT->AG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:2:0:0:10,12:0,0:0,0:10,10 48:4:0:0:35,35:0,0:9,9:0,0 chr6 11548 . C G,T . QSS_ref NT=het;QSS=193;QSS_NT=37;SGT=CG->CT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 29:0:0:0:0,0:23,28:6,6:0,0 55:0:0:0:0,0:47,47:0,0:8,8 chr6 11601 . T G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:1,1:0,0:0,0:37,37 57:0:0:0:0,0:0,0:1,1:56,56 chr6 11767 . T A . PASS NT=ref;QSS=19;QSS_NT=19;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 38:0:0:0:0,0:0,0:0,0:38,38 59:0:0:0:2,2:0,0:0,0:57,57 chr6 11787 . A C,G . QSS_ref NT=het;QSS=61;QSS_NT=11;SGT=AC->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 40:0:0:0:37,37:3,3:0,0:0,0 60:0:0:0:53,53:0,0:7,7:0,0 chr6 11828 . A T . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:0:0:0:31,31:0,0:0,0:1,1 62:0:0:0:61,61:0,0:0,0:1,1 chr6 11833 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=GT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:1,1:0,0:0,0:29,29 61:0:0:0:0,0:0,0:4,4:57,57 chr6 11842 . T G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:2,2:0,0:28,28 60:0:0:0:0,0:0,0:5,5:55,55 chr6 11931 . T A . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 18:0:0:0:0,0:1,1:0,0:17,19 59:0:0:0:9,9:0,0:0,0:50,50 chr6 12102 . T C,G . QSS_ref NT=het;QSS=215;QSS_NT=64;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:0:0:0:0,0:13,13:0,0:21,21 54:0:0:0:0,0:0,0:5,5:49,49 chr6 12118 . T G . PASS NT=ref;QSS=17;QSS_NT=17;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 31:0:0:0:0,0:0,0:0,0:31,31 53:0:0:0:0,0:0,0:2,2:51,51 chr6 12156 . G A . QSS_ref NT=ref;QSS=6;QSS_NT=6;SGT=GG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 34:2:0:0:0,0:0,0:32,32:0,0 54:4:0:0:6,6:0,0:44,44:0,0 chr6 12167 . A C . PASS NT=ref;QSS=39;QSS_NT=39;SGT=AA->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:2:0:0:31,31:0,0:0,0:0,0 44:4:0:0:30,30:10,10:0,0:0,0 chr6 12205 . C A . QSS_ref NT=ref;QSS=4;QSS_NT=4;SGT=CC->AC;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:4:0:0:0,0:22,22:0,0:0,0 35:11:0:0:3,3:21,22:0,0:0,0 chr6 12227 . T A,G . QSS_ref;BCNoise NT=het;QSS=5;QSS_NT=5;SGT=GT->AT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:8:0:0:0,0:0,0:4,4:13,13 45:29:0:0:1,1:0,0:0,0:15,20 chr6 12269 . G A,T . QSS_ref NT=het;QSS=62;QSS_NT=39;SGT=AG->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:3:0:0:4,4:0,0:23,23:0,0 51:19:0:0:0,0:0,0:29,29:3,6 chr6 12320 . G A . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 32:1:0:0:0,0:0,0:31,31:0,0 49:5:0:0:7,7:0,0:37,37:0,0 chr6 12389 . T G . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:0,0:0,0:0,0:26,26 42:0:0:0:0,0:0,0:1,1:41,41 chr6 12392 . A G . QSS_ref NT=ref;QSS=3;QSS_NT=3;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:0:0:0:27,27:1,1:0,0:0,0 44:0:0:0:42,42:0,0:2,2:0,0 chr6 12514 . C G . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=CG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 23:0:0:0:0,0:23,23:0,0:0,0 42:0:0:0:0,0:41,41:1,1:0,0 chr6 12534 . A C,G . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:14,14:0,0:7,7:0,0 43:0:0:0:42,42:1,1:0,0:0,0 chr6 12555 . C A . QSS_ref NT=ref;QSS=2;QSS_NT=2;SGT=AC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:0,0:22,22:0,0:0,0 39:0:0:0:4,4:35,35:0,0:0,0 chr6 12647 . C T . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:26,26:0,0:1,1 57:0:0:0:0,0:57,57:0,0:0,0 chr6 12654 . G C,T . QSS_ref NT=het;QSS=300;QSS_NT=66;SGT=GT->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 25:0:0:0:0,0:0,0:17,17:8,8 59:0:0:0:0,0:8,8:51,51:0,0 chr6 12744 . T C . QSS_ref NT=het;QSS=1;QSS_NT=1;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 24:0:0:0:2,2:0,0:0,0:22,22 60:0:0:0:0,0:4,4:0,0:56,56 chr6 12797 . C A,G . QSS_ref NT=het;QSS=76;QSS_NT=45;SGT=CG->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:4:0:0:0,0:21,21:3,3:0,0 68:3:0:0:8,8:57,57:0,0:0,0 chr6 12872 . C T . BCNoise;QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=CT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 33:19:0:0:0,0:14,14:0,0:0,0 45:22:0:0:0,0:22,22:0,0:1,2 chr6 12911 . T C,G . QSS_ref NT=het;QSS=31;QSS_NT=31;SGT=GT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 28:6:0:0:0,0:0,0:2,2:20,20 56:12:0:0:0,0:10,10:0,0:34,34 chr6 12994 . T C,G . QSS_ref NT=het;QSS=66;QSS_NT=51;SGT=CT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 27:0:0:0:0,0:5,5:0,0:22,22 66:0:0:0:0,0:0,0:3,3:63,63 chr6 13022 . T G . PASS NT=ref;QSS=3070;QSS_NT=3070;SGT=TT->GT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:0,0:30,30 65:0:0:0:0,0:0,0:14,14:51,51 chr6 13084 . G A . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 37:0:0:0:0,0:0,0:37,37:0,0 69:0:0:0:9,9:0,0:60,60:0,0 chr6 13151 . C A,G . QSS_ref NT=het;QSS=227;QSS_NT=55;SGT=CG->AC;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 21:0:0:0:0,0:13,25:8,8:0,0 45:0:0:0:10,10:35,35:0,0:0,0 chr6 13285 . G C,T . QSS_ref NT=het;QSS=257;QSS_NT=47;SGT=GT->CG;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 30:0:0:0:0,0:0,0:23,28:7,7 56:0:0:0:0,0:12,12:44,44:0,0 chr6 13369 . G A,C . QSS_ref NT=het;QSS=3070;QSS_NT=3070;SGT=AG->CG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 26:0:0:0:4,4:0,0:22,32:0,0 58:0:0:0:0,0:2,2:56,56:0,0 chr6 13383 . A C,T . QSS_ref NT=het;QSS=51;QSS_NT=46;SGT=AC->AT;SOMATIC;TQSS=2;TQSS_NT=2 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:14,29:8,8:0,0:0,0 54:0:0:0:52,52:0,0:0,0:2,2 chr6 13395 . A G . QSS_ref NT=ref;QSS=13;QSS_NT=13;SGT=AA->AG;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 22:0:0:0:22,38:0,0:0,0:0,0 51:0:0:0:50,50:0,0:1,1:0,0 chr6 13458 . T C . QSS_ref NT=ref;QSS=9;QSS_NT=9;SGT=TT->CT;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 11:2:0:0:0,0:0,0:0,0:9,23 36:7:0:0:0,0:3,3:0,0:26,26 chr6 13485 . C A . QSS_ref;BCNoise NT=ref;QSS=7;QSS_NT=7;SGT=CC->AC;SOMATIC;TQSS=1;TQSS_NT=1 DP:FDP:SDP:SUBDP:AU:CU:GU:TU 12:4:0:0:0,0:8,16:0,0:0,0 36:17:0:0:1,1:18,22:0,0:0,0 chr6 13601 . G A,C . 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