comparison sequenza_pipeline.xml @ 3:235c8e5dfece draft default tip

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2:12d83c22866a

    #end if
     
    2>&1 ;

  cat ./output/*segments.txt > $output;

  </command>
<inputs>
    <conditional name="sampleid_source">
      <param label="Choose the source to open the Sample Id" name="sampleid_selector" type="select">
        <option value="bamfile">BAM File Name</option>

    <param name="input" format="txt,tabular" type="data" label="Input Sequenza Seqz File"/>
  </inputs>
  <outputs>
    <data name="output" format="seg,txt"/>
    <collection name="list_output" type="list" description="Sequenza outputs">
      <discover_datasets pattern="__name_and_ext__" directory="output"/>
    </collection> 
  </outputs>
</tool>

3:235c8e5dfece

    #end if
     
    2>&1 ;

  cat ./output/*segments.txt > $output;
  
  </command>
<inputs>
    <conditional name="sampleid_source">
      <param label="Choose the source to open the Sample Id" name="sampleid_selector" type="select">
        <option value="bamfile">BAM File Name</option>

    <param name="input" format="txt,tabular" type="data" label="Input Sequenza Seqz File"/>
  </inputs>
  <outputs>
    <data name="output" format="seg,txt"/>
    <collection name="list_output" type="list" description="Sequenza outputs">
      <discover_datasets pattern="__name_and_ext__" directory="output" visible="true"/>
    </collection> 
  </outputs>
</tool>