Mercurial > repos > morinlab > package_sequenza_2_1_2

annotate tool_dependencies.xml @ 0:6340da10d134 draft default tip

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planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
author morinlab
date Tue, 11 Oct 2016 14:01:22 -0400
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6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
morinlab
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1 <?xml version="1.0"?>
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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2 <tool_dependency>
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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3 <package name="R" version="3.2.1">
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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4 <repository changeset_revision="77d439695328" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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5 </package>
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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6 <package name="deseq2" version="1.10.0">
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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7 <repository changeset_revision="5d9def29ff0b" name="package_deseq2_1_10_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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8 </package>
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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9 <package name="pypy" version="5.4.1">
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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10 <repository changeset_revision="32b2ef0a02cd" name="package_pypy_5_4_1" owner="morinlab" toolshed="https://testtoolshed.g2.bx.psu.edu" />
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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11 </package>
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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12 <package name="sequenza" version="2.1.2">
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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13 <install version="1.0">
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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14 <actions>
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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15 <action type="setup_r_environment">
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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16 <repository changeset_revision="77d439695328" name="package_r_3_2_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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17 <package name="R" version="3.1.2" />
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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18 </repository>
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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19 <package>https://depot.galaxyproject.org/package/noarch/iterators_1.0.8.tar.gz</package>
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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20 <package>https://depot.galaxyproject.org/package/noarch/foreach_1.4.3.tar.gz</package>
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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21 <package>https://github.com/marcoalbuquerque-sfu/bioconductor-galaxy-cancer-genomics-toolbox/raw/master/zlibbioc_1.16.0.tar.gz</package>
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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22 <package>https://depot.galaxyproject.org/package/noarch/bitops_1.0-6.tar.gz</package>
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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23 <package>https://github.com/marcoalbuquerque-sfu/bioconductor-galaxy-cancer-genomics-toolbox/raw/master/BiocGenerics_0.16.1.tar.gz</package>
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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24 <package>https://github.com/marcoalbuquerque-sfu/bioconductor-galaxy-cancer-genomics-toolbox/raw/master/S4Vectors_0.8.1.tar.gz</package>
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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25 <package>https://github.com/marcoalbuquerque-sfu/bioconductor-galaxy-cancer-genomics-toolbox/raw/master/IRanges_2.4.1.tar.gz</package>
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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26 <package>https://github.com/marcoalbuquerque-sfu/bioconductor-galaxy-cancer-genomics-toolbox/raw/master/GenomeInfoDb_1.6.1.tar.gz</package>
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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27 <package>https://github.com/marcoalbuquerque-sfu/bioconductor-galaxy-cancer-genomics-toolbox/raw/master/XVector_0.10.0.tar.gz</package>
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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28 <package>https://github.com/marcoalbuquerque-sfu/bioconductor-galaxy-cancer-genomics-toolbox/raw/master/GenomicRanges_1.22.1.tar.gz</package>
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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29 <package>https://github.com/marcoalbuquerque-sfu/bioconductor-galaxy-cancer-genomics-toolbox/raw/master/Biobase_2.30.0.tar.gz</package>
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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30 <package>https://depot.galaxyproject.org/package/noarch/DBI_0.3.1.tar.gz</package>
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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31 <package>https://depot.galaxyproject.org/package/noarch/RSQLite_1.0.0.tar.gz</package>
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32 <package>https://github.com/marcoalbuquerque-sfu/bioconductor-galaxy-cancer-genomics-toolbox/raw/master/AnnotationDbi_1.33.1.tar.gz</package>
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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33 <package>https://github.com/marcoalbuquerque-sfu/bioconductor-galaxy-cancer-genomics-toolbox/raw/master/copynumber_1.10.0.tar.gz</package>
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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34 <package>https://cran.r-project.org/src/contrib/squash_1.0.7.tar.gz</package>
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35 <package>https://github.com/marcoalbuquerque-sfu/bioconductor-galaxy-cancer-genomics-toolbox/raw/master/sequenza_2.1.2.tar.gz</package>
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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36 </action>
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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37 <action type="set_environment">
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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38 <environment_variable action="set_to" name="SEQUENZA_INSTALL_DIR">$INSTALL_DIR</environment_variable>
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39 </action>
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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40 </actions>
6340da10d134 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_sequenza_2_1_2 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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41 </install>
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42 </package>
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43 </tool_dependency>