# HG changeset patch
# User morinlab
# Date 1485558165 18000
# Node ID 1f875323d97538a214b10e1a6e53a706d9261b04
# Parent  54b4a501243f2861f105a31493f2cac49fda2ef1
Uploaded

diff -r 54b4a501243f -r 1f875323d975 tool_dependencies.xml
--- a/tool_dependencies.xml	Mon Sep 12 15:30:25 2016 -0400
+++ b/tool_dependencies.xml	Fri Jan 27 18:02:45 2017 -0500
@@ -3,28 +3,28 @@
   <package name="R" version="3.2.1">
     <repository changeset_revision="77d439695328" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
   </package>
-	<package name="cancer_genomics_functions" version="1.0">
-	  <install version="1.0">
-		  <actions>
-			  <action type="download_by_url">https://raw.githubusercontent.com/marcoalbuquerque-sfu/cancer_genomics_functions/master/functions.R</action>
+<package name="cancer_genomics_functions" version="1.0">
+  <install version="1.0">
+  <actions>
+  <action type="download_by_url">https://raw.githubusercontent.com/marcoalbuquerque-sfu/cancer_genomics_functions/master/functions.R</action>
         <action type="setup_r_environment">
           <repository changeset_revision="77d439695328" name="package_r_3_2_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
             <package name="R" version="3.2.1" />
           </repository>
-          <package>https://cran.r-project.org/src/contrib/proto_0.3-10.tar.gz</package>
+          <package>https://cran.r-project.org/src/contrib/Archive/proto/proto_0.3-10.tar.gz</package>
           <package>https://cran.r-project.org/src/contrib/findpython_1.0.1.tar.gz</package>
           <package>https://cran.r-project.org/src/contrib/getopt_1.20.0.tar.gz</package>
           <package>https://cran.r-project.org/src/contrib/rjson_0.2.15.tar.gz</package>
-          <package>https://cran.r-project.org/src/contrib/argparse_1.0.1.tar.gz</package>
+          <package>https://cran.r-project.org/src/contrib/Archive/argparse/argparse_1.0.1.tar.gz</package>
         </action>
         <action type="move_file">
           <source>functions.R</source>
           <destination>$INSTALL_DIR</destination>
         </action>
-				<action type="set_environment">
-				  <environment_variable action="set_to" name="CANCER_GENOMICS_FUNCTIONS_PATH">$INSTALL_DIR</environment_variable>
-			  </action>
-			</actions>
-		</install>
-	</package>
+<action type="set_environment">
+  <environment_variable action="set_to" name="CANCER_GENOMICS_FUNCTIONS_PATH">$INSTALL_DIR</environment_variable>
+  </action>
+</actions>
+</install>
+</package>
 </tool_dependency>