Mercurial > repos > morinlab > package_boost_1_55_0

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planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
author morinlab
date Tue, 11 Oct 2016 13:27:07 -0400
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56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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1 <?xml version="1.0"?>
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
morinlab
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2 <tool_dependency>
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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3 <package name="bzlib" version="1.0.6">
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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4 <repository changeset_revision="29f79feefc77" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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5 </package>
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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6 <package name="boost" version="1.55.0">
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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7 <install version="1.0">
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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8 <actions>
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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9 <action type="download_by_url">https://depot.galaxyproject.org/software/boost/boost_1.55.0_src_all.tar.gz</action>
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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10
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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11 <action type="set_environment_for_install">
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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12 <repository changeset_revision="29f79feefc77" name="package_bzlib_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
morinlab
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13 <package name="bzlib" version="1.0.6" />
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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14 </repository>
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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15 </action>
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
morinlab
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16 <action type="set_environment">
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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17 <environment_variable action="set_to" name="BOOST_ROOT_DIR">$INSTALL_DIR/boost</environment_variable>
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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18 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/boost/lib/</environment_variable>
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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19 <environment_variable action="prepend_to" name="LIBRARY_PATH">$INSTALL_DIR/boost/lib/</environment_variable>
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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20 <environment_variable action="prepend_to" name="CPLUS_INCLUDE_PATH">$INSTALL_DIR/boost/include</environment_variable>
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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21 <environment_variable action="prepend_to" name="C_INCLUDE_PATH">$INSTALL_DIR/boost/include</environment_variable>
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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22 </action>
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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23 <action type="shell_command">./bootstrap.sh</action>
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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24 <action type="shell_command">
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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25 ./bjam address-model=64 cflags=-fPIC cxxflags=-fPIC install --prefix=$INSTALL_DIR/boost/ -sBZIP2_INCLUDE=$BZLIB_INCLUDE_DIR -sBZIP2_LIB=$BZLIB_LIB_DIR -sBZIP2_SOURCE=$BZLIB_SOURCE_DIR 1&gt; $INSTALL_DIR/stdout.txt 2&gt; $INSTALL_DIR/stderr.txt;
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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26 </action>
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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27 </actions>
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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28 </install>
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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29 <readme>
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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30 Compiling boost requires a C++ compiler (typically gcc).
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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31 You can access the boost root directory through the $BOOST_ROOT_DIR system variable. All modules will be build.
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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32 Development of that wrapper happens in https://github.com/bgruening/galaxytools/.
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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33 </readme>
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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34 </package>
56042def4337 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_boost_1_55_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40
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35 </tool_dependency>