Mercurial > repos > morinlab > package_bamtools_2_3_0

annotate tool_dependencies.xml @ 0:17def8636dd4 draft default tip

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planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
author morinlab
date Tue, 11 Oct 2016 13:34:22 -0400
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17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
morinlab
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1 <?xml version="1.0"?>
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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2 <tool_dependency>
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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3 <package name="cmake" version="3.1.0">
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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4 <repository changeset_revision="e9baec7e0438" name="package_cmake_3_1_0" owner="morinlab" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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5 </package>
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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6 <package name="samtools" version="0.1.18">
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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7 <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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8 </package>
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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9 <package name="bamtools" version="2.3.0">
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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10 <install version="1.0">
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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11 <actions>
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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12 <action type="download_by_url">https://github.com/pezmaster31/bamtools/archive/v2.3.0.tar.gz</action>
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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13
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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14 <action type="set_environment_for_install">
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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15 <repository changeset_revision="e9baec7e0438" name="package_cmake_3_1_0" owner="morinlab" toolshed="https://testtoolshed.g2.bx.psu.edu">
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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16 <package name="cmake" version="3.1.0" />
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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17 </repository>
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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18 </action>
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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20 <action type="set_environment_for_install">
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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21 <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu">
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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22 <package name="samtools" version="0.1.18" />
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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23 </repository>
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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24 </action>
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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25
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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26 <action type="shell_command">mkdir build</action>
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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27 <action type="change_directory">build</action>
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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28 <action type="shell_command">cmake ..</action>
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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29 <action type="shell_command">make</action>
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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30 <action type="change_directory">..</action>
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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32 <action type="move_directory_files">
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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33 <source_directory>./</source_directory>
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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34 <destination_directory>$INSTALL_DIR</destination_directory>
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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35 </action>
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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36
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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37 <action type="set_environment">
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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38 <environment_variable action="set_to" name="BAMTOOLS_ROOT">$INSTALL_DIR</environment_variable>
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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39 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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40 </action>
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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41
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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42 </actions>
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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43 </install>
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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44 </package>
17def8636dd4 planemo upload for repository https://github.com/morinlab/tools-morinlab/tree/master/packages/package_bamtools_2_3_0 commit 4ef2d91b7c1686a2696b92fe538d4aec51d05e40-dirty
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45 </tool_dependency>