# HG changeset patch
# User morinlab
# Date 1481071871 18000
# Node ID 2864eb962e5a0d88c95d068d9ce75f2228bb71e6
# Parent  3f5545f5f0c8a40552ed49708608cc25beda2fd7
Uploaded

diff -r 3f5545f5f0c8 -r 2864eb962e5a mutationseq.xml
--- a/mutationseq.xml	Tue Oct 11 14:21:25 2016 -0400
+++ b/mutationseq.xml	Tue Dec 06 19:51:11 2016 -0500
@@ -98,8 +98,10 @@
     
   --threshold $advancedsettings.filter_prob
 
-  | grep -v ".*no somatic mutation calls.*" >> $output
-
+  | grep -v ".*no somatic mutation calls.*" >> ./output_noheader;
+  echo "##fileformat=VCFv4.2
+  #CHROM\tPOS\tID\tREF\tALT\tQUAL\tFILTER\tINFO" > ./minimal_vcf_header;
+  cat ./minimal_vcf_header ./output_noheader > $output
   #if $interval
     ; done
   #end if