Mercurial > repos > morinlab > merge_seg_collection

changeset 0:83219468e161 draft default tip

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author morinlab
date Mon, 05 Dec 2016 00:01:47 -0500
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files merge_seg_collection.xml
diffstat 1 files changed, 24 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/merge_seg_collection.xml	Mon Dec 05 00:01:47 2016 -0500
@@ -0,0 +1,24 @@
+<tool id="merge_seg_collection" name="Merge SEG Collection" version="1.0.0">
+  <description> 
+  Merge a collection of SEG files
+  </description>
+  <command>
+  <![CDATA[
+
+  #for $i, $f in enumerate($seg_collection)
+    #if $i == 0
+      cat $f >> $output;
+    #else
+      tail -n+1 $f >> $output;
+    #end if
+  #end for
+
+  ]]>
+  </command>
+  <inputs>
+    <param type="data_collection" format="tabular" collection_type="list"  name="seg_collection"/>
+  </inputs>
+  <outputs>
+    <data format="tabular" name="output"/>
+  </outputs>
+</tool>