Mercurial > repos > moheydarian > ggplot_histogram
comparison ggplot_histogram.xml @ 14:bd1c3f88daa9 draft
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| author | moheydarian |
|---|---|
| date | Tue, 11 Apr 2017 16:43:35 -0400 |
| parents | 9673586abd7a |
| children | 743a506f2b36 |
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| 13:9673586abd7a | 14:bd1c3f88daa9 |
|---|---|
| 1 <tool id="ggplot_histogram" name="Histogram w ggplot2" version="0.1.2"> | 1 <tool id="ggplot_histogram" name="Histogram w ggplot2" version="0.1.3"> |
| 2 <requirements> | 2 <requirements> |
| 3 <requirement type="package">r-getopt</requirement> | 3 <requirement type="package">r-getopt</requirement> |
| 4 <requirement type="package">r-ggplot2</requirement> | 4 <requirement type="package">r-ggplot2</requirement> |
| 5 <requirement type="package">r-reshape2</requirement> | 5 <requirement type="package">r-reshape2</requirement> |
| 6 </requirements> | 6 </requirements> |
| 7 <stdio> | 7 <stdio> |
| 8 <exit_code range="1:" /> | 8 <exit_code range="1:" /> |
| 9 </stdio> | 9 </stdio> |
| 10 <command><![CDATA[ | 10 <command><![CDATA[ |
| 11 Rscript ${__tool_directory__}/ggplotscripthistogram.R --input "$input1" --title "$title" | 11 Rscript ${__tool_directory__}/ggplotscripthistogram.R --input "$input1" --title "$title" |
| 12 --xlab "$xlab" --ylab "$ylab" --transform "$transformation.transform" --scaling "$scaling.Plot_scaling" | 12 --xlab "$xlab" --ylab "$ylab" --transform "$transformation.transform" --scaling "$scaling.Plot_scaling" --density "$distribution.density" |
| 13 --colorscheme "$coloring.colorscheme" --dim "$dimensions.plotdim" --facet "$group.facet" | 13 --colorscheme "$coloring.colorscheme" --dim "$dimensions.plotdim" --facet "$group.facet" |
| 14 --size "$size" --binwidth "$binwidth" --legend "$showlegend.legend" --output "Rplot.pdf" | 14 --size "$size" --binwidth "$binwidth" --legend "$showlegend.legend" --output "Rplot.pdf" |
| 15 #if str( $coloring.colorscheme ) == "Defined": | 15 #if str( $coloring.colorscheme ) == "Defined": |
| 16 --colors ${coloring.colors} | 16 --colors ${coloring.colors} |
| 17 --colororder ${coloring.colororder} | 17 --colororder ${coloring.colororder} |
| 53 <option value="none">Plot the data as it is</option> | 53 <option value="none">Plot the data as it is</option> |
| 54 <option value="log2">Log2(value) transform my data</option> | 54 <option value="log2">Log2(value) transform my data</option> |
| 55 <option value="log2plus1">Log2(value+1) transform my data</option> | 55 <option value="log2plus1">Log2(value+1) transform my data</option> |
| 56 <option value="log10">Log10(value) transform my data</option> | 56 <option value="log10">Log10(value) transform my data</option> |
| 57 <option value="log10plus1">Log10(value+1) transform my data</option> | 57 <option value="log10plus1">Log10(value+1) transform my data</option> |
| 58 </param> | |
| 59 </conditional> | |
| 60 <conditional name="distribution"> | |
| 61 <param name="density" type="select" label="Advanced - plot counts or density"> | |
| 62 <option value="counts">Plot counts on the y-axis</option> | |
| 63 <option value="density">Plot frequency on the y-axis</option> | |
| 58 </param> | 64 </param> |
| 59 </conditional> | 65 </conditional> |
| 60 <conditional name="group"> | 66 <conditional name="group"> |
| 61 <param name="facet" type="select" label="Advanced - faceting"> | 67 <param name="facet" type="select" label="Advanced - faceting"> |
| 62 <option value="none">Plot my groups on one plot</option> | 68 <option value="none">Plot my groups on one plot</option> |