Mercurial > repos > moheydarian > ggplot_histogram

comparison ggplot_histogram.xml @ 2:9e94d349b5c4 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author moheydarian
date Wed, 22 Feb 2017 22:23:08 -0500
parents d0945de2fc3a
children 6131fe8dc7e8
comparison
equal deleted inserted replaced
1:72abdc872e49 2:9e94d349b5c4
39 39
40 ]]></command> 40 ]]></command>
41 <inputs> 41 <inputs>
42 <param name="input1" type="data" format="tabular" label="Input should have column headers - these will be the columns that are plotted"/> 42 <param name="input1" type="data" format="tabular" label="Input should have column headers - these will be the columns that are plotted"/>
43 <param name="title" size="30" type="text" format="txt"/> 43 <param name="title" size="30" type="text" format="txt"/>
44 <param name="xlab" size="30" type="text" value="title of x-axis" label="Label for x axis"/> 44 <param name="xlab" size="30" type="text" value="title of x-axis" label="Label for x-axis"/>
45 <param name="ylab" size="30" type="text" value="title of y-axis" label="Label for x axis"/> 45 <param name="ylab" size="30" type="text" value="title of y-axis" label="Label for y-axis"/>
46 <param name="size" size="4" type="float" value="1" label="relative line width" /> 46 <param name="size" size="4" type="float" value="1" label="relative line width" />
47 <param name="binwidth" size="4" type="float" value="0.5" label="Bin width for plotting"/> 47 <param name="binwidth" size="4" type="float" value="0.5" label="Bin width for plotting"/>
48 <conditional name="transformation"> 48 <conditional name="transformation">
49 <param name="transform" type="select" label="Advanced - log transformation"> 49 <param name="transform" type="select" label="Advanced - log transformation">
50 <option value="none">Plot the data as it is</option> 50 <option value="none">Plot the data as it is</option>
149 <param name="input1" value="input.txt"/> 149 <param name="input1" value="input.txt"/>
150 <output name="output1" file="Rplot.pdf"/> 150 <output name="output1" file="Rplot.pdf"/>
151 </test> 151 </test>
152 </tests> 152 </tests>
153 <help><![CDATA[ 153 <help><![CDATA[
154 /bin/sh: uh: command not found 154 /bin/sh:
155 This tool will generate a histogram representing the distrinutions of each numerical column. Each column should have a descriptive header with no spaces, which will be used in the plot legend to represent the corresponding column (group).
156
157 Input data example:
158 ID Cond_A Cond_B
159 gene_A 10 15
160 gene_B 8 12
161 gene_C 10 15
162 gene_D 6 9
163 gene_E 9 13.5
164 gene_F 8 12
155 165
156 ]]></help> 166 ]]></help>
157 <citations> 167 <citations>
158 <citation type="bibtex"> 168 <citation type="bibtex">
159 @misc{renameTODO, 169 @misc{renameTODO,
160 author = {Michelle Clinton, FirstTODO}, 170 author = {FirstTODO},
161 year = {TODO}, 171 year = {TODO},
162 title = {TODO}, 172 title = {TODO},
163 url = {under construction}, 173 url = {under construction},
164 }</citation> 174 }</citation>
165 </citations> 175 </citations>