view cast.xml @ 3:d7e3814be68e draft default tip

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<tool id="cast" name="cast" version="0.0.2">
    <description>expand combinations of variables:values to columnar format</description>
    <requirements>
        <requirement type="package">r-getopt</requirement>
        <requirement type="package">r-reshape2</requirement>
    </requirements>
    <stdio>
        <exit_code range="1:" />
    </stdio>
    <command><![CDATA[
        Rscript ${__tool_directory__}/cast.R --input "$input1" --output "output.tabular"
    ]]></command>
    <inputs>
        <param name="input1" type="data" format="tabular" label="Input should be molten data"/>
       
    </inputs>
    <outputs>
        <data name="output1" format="tabular" from_work_dir="output.tabular"/>
    </outputs>
    <tests>
        <test>
            <param name="input1" value="input.txt"/>
            <output name="output1" file="output.tabular"/>
        </test>
    </tests>
    <help><![CDATA[
This tool will apply the dcast function of the reshape2 R package. The input data should be in a 'long' format or molten by the melt tool. The output will be in a wide format.
The cast function expands each unique variable:value combination on a single line to columnar format. Documantation on the reshape2 package can be found here: https://cran.r-project.org/web/packages/reshape2/reshape2.pdf
    ]]></help>
    <citations>
        <citation type="bibtex">
@misc{renameTODO,
  author = {TODO, FirstTODO},
  year = {TODO},
  title = {TODO},
  url = {under construction},
}</citation>
    </citations>
</tool>