Mercurial > repos > modencode-dcc > macs2
comparison tool_dependencies.xml @ 23:775a4d6e485a draft default tip
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| author | modencode-dcc |
|---|---|
| date | Fri, 25 Jan 2013 09:41:56 -0500 |
| parents | b2de5e7a9b80 |
| children |
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| 22:b2de5e7a9b80 | 23:775a4d6e485a |
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| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <package name="macs2" version="2.0.10.2"> | 3 <package name="macs2" version="2.0.10.2"> |
| 4 <install version="1.0"> | 4 <install version="1.0"> |
| 5 <actions> | 5 <!--<actions> |
| 6 <action type="download_by_url">http://data.modencode.org/modENCODE_Galaxy/tarballs/Python-2.7.3.tar.bz2</action> | 6 <action type="download_by_url">http://data.modencode.org/modENCODE_Galaxy/tarballs/Python-2.7.3.tar.bz2</action> |
| 7 <action type="shell_command">./configure</action> | 7 <action type="shell_command">./configure</action> |
| 8 <action type="shell_command">make -j</action> | 8 <action type="shell_command">make -j</action> |
| 9 <action type="shell_command">sudo -n make install</action> | 9 <action type="shell_command">sudo -n make install</action> |
| 10 <action type="shell_command">sudo -n chmod ag+w /usr/local/lib/python2.7/site-packages</action> | 10 <action type="shell_command">sudo -n chmod ag+w /usr/local/lib/python2.7/site-packages</action> |
| 11 <action type="shell_command">sudo -n chmod ag+wx /usr/local/bin</action> | 11 <action type="shell_command">sudo -n chmod ag+wx /usr/local/bin</action> |
| 12 </actions> | 12 </actions>--> |
| 13 <actions> | 13 <actions> |
| 14 <action type="download_by_url">http://data.modencode.org/modENCODE_Galaxy/tarballs/macs2pkg.tar</action> | 14 <action type="download_by_url">http://data.modencode.org/modENCODE_Galaxy/tarballs/macs2pkg.tar</action> |
| 15 <action type="move_directory_files"> | 15 <action type="move_directory_files"> |
| 16 <source_directory>bin</source_directory> | 16 <source_directory>bin</source_directory> |
| 17 <destination_directory>$INSTALL_DIR/bin</destination_directory> | 17 <destination_directory>$INSTALL_DIR/bin</destination_directory> |
| 27 </actions> | 27 </actions> |
| 28 </install> | 28 </install> |
| 29 <readme>Macs2 depends on having python2.7 installed on all nodes of the work cluster</readme> | 29 <readme>Macs2 depends on having python2.7 installed on all nodes of the work cluster</readme> |
| 30 </package> | 30 </package> |
| 31 </tool_dependency> | 31 </tool_dependency> |
| 32 | |
| 33 <!--<action type="download_by_url">http://data.modencode.org/modENCODE_Galaxy/tarballs/numpy.tar</action> | |
| 34 <action type="shell_command">sudo -n python setup.py build</action> | |
| 35 <action type="shell_command">sudo -n python setup.py install</action>--> | |
| 36 |