view tool_dependencies.xml @ 8:11f7ee39491e draft

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<?xml version="1.0"?>
<tool_dependency>
    <set_environment version="1.0">
        <environment_variable name="SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
    </set_environment>
     <package name="macs14" version="1.4.2">
         <install version="1.0">
             <actions>
                <action type="download_by_url">https://github.com/modENCODE-DCC/Galaxy/blob/master/toolshed/dependencies/macs/macs.tar.gz?raw=true</action>
                <action type="shell_command">sudo python setup.py install</action>
                <action type="move_directory_files">
                    <source_directory>bin</source_directory>
                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
                </action>
                <action type="move_directory_files">
                    <source_directory>lib</source_directory>
                    <destination_directory>$INSTALL_DIR/lib</destination_directory>
                </action>
                <action type="set_environment">
                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                     <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib</environment_variable>
                </action>
            </actions>
        </install>
        <readme>Macs depends on having python2.6 installed on all nodes of the work cluster</readme>
    </package>
</tool_dependency>