Mercurial > repos > modencode-dcc > idr_package
changeset 12:5be09cb9a7ed draft
Uploaded
| author | modencode-dcc |
|---|---|
| date | Mon, 21 Jan 2013 10:57:47 -0500 |
| parents | 203aedd70036 |
| children | 1a1f369b4baf |
| files | idrPlotDef.xml |
| diffstat | 1 files changed, 34 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/idrPlotDef.xml Mon Jan 21 10:57:47 2013 -0500 @@ -0,0 +1,34 @@ +<!-- +Usage of THIS SCRIPT: ./idrPlotWrapper.sh em uri outputfile +--> + +<tool id="batch_consistency_plot" name="IDR-Plot"> + <requirements> + <requirement type="set_environment">SCRIPT_PATH</requirement> + </requirements> + <description>Plot Consistency Analysis on IDR output files</description> + <command interpreter="bash">idrPlotWrapper.sh $em $uri $outputfile \$SCRIPT_PATH</command> + <inputs> + <param name="uri" type="data" label="uri.sav file (output from IDR consistency analysis)"/> + <param name="em" type="data" label="em.sav file (output from IDR consistency analysis)"/> + </inputs> + <outputs> + <data format="pdf" name="outputfile" label="IDR-plot.pdf"/> + </outputs> + + <tests> + <test> +<!-- + <param name="input" value="fa_gc_content_input.fa"/> + <output name="out_file1" file="fa_gc_content_output.txt"/> +--> + </test> + </tests> + + <help> +Plots the correspondence curve and IDR threshold (i.e. number of selected peaks vs IDR) for each pair of samples. +Uses the output of IDR consistency analysis and produces a downloadable PDF file containing the graphical analysis. +This is a part of the IDR package. For more information about IDR, see https://sites.google.com/site/anshulkundaje/projects/idr. + </help> + +</tool>