Mercurial > repos > modencode-dcc > idr_package
comparison idrToolDef.xml @ 15:b033e6082611 draft
Uploaded
| author | modencode-dcc |
|---|---|
| date | Mon, 21 Jan 2013 11:16:57 -0500 |
| parents | 9443cc20629f |
| children | 24055dbb63b2 |
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| 14:9443cc20629f | 15:b033e6082611 |
|---|---|
| 15 <tool id="batch_consistency_analysis_2" name="IDR"> | 15 <tool id="batch_consistency_analysis_2" name="IDR"> |
| 16 <requirements> | 16 <requirements> |
| 17 <requirement type="set_environment">SCRIPT_PATH</requirement> | 17 <requirement type="set_environment">SCRIPT_PATH</requirement> |
| 18 </requirements> | 18 </requirements> |
| 19 <description>Consistency Analysis on a pair of narrowPeak files</description> | 19 <description>Consistency Analysis on a pair of narrowPeak files</description> |
| 20 <command interpreter="Rscript">batch-consistency-analysis.r $input1 $input2 $halfwidth $overlap $option $sigvalue $gtable $rout $aboveIDR $ratio $emSav $uriSav \$SCRIPT_PATH</command> | 20 <command interpreter="Rscript">batch-consistency-analysis.r $input1 $input2 $halfwidth $overlap $option $sigvalue $gtable $rout $aboveIDR $ratio $emSav $uriSav $SCRIPT_PATH</command> |
| 21 <inputs> | 21 <inputs> |
| 22 <param format="narrowPeak" name="input1" type="data" label="First NarrowPeak File"/> | 22 <param format="narrowPeak" name="input1" type="data" label="First NarrowPeak File"/> |
| 23 <param format="narrowPeak" name="input2" type="data" label="Second NarrowPeak File"/> | 23 <param format="narrowPeak" name="input2" type="data" label="Second NarrowPeak File"/> |
| 24 <param name="halfwidth" size="4" type="integer" value="1000" label="Half-Width" help="-1 if using reported peak width"/> | 24 <param name="halfwidth" size="4" type="integer" value="1000" label="Half-Width" help="-1 if using reported peak width"/> |
| 25 <!-- <param name="outputprefix" type="text" size="50" label="Output Prefix" value="3066_rep1_VS_rep2"/> --> | 25 <!-- <param name="outputprefix" type="text" size="50" label="Output Prefix" value="3066_rep1_VS_rep2"/> --> |