Mercurial > repos > modencode-dcc > idr_package

comparison idrToolDef.xml @ 21:79a64169d959 draft

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author modencode-dcc
date Mon, 21 Jan 2013 11:45:24 -0500
parents 1ab2b0a3f8ba
children 241c996ca185
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20:1ab2b0a3f8ba 21:79a64169d959
31 <param name="sigvalue" type="select" label="Significant Value" value="p.value" help="Select p-value if the input peak files are generated by MAC. Select q-value if the input peak files are generated by SPP."> 31 <param name="sigvalue" type="select" label="Significant Value" value="p.value" help="Select p-value if the input peak files are generated by MAC. Select q-value if the input peak files are generated by SPP.">
32 <option value="p.value">p-value</option> 32 <option value="p.value">p-value</option>
33 <option value="q.value">q-value</option> 33 <option value="q.value">q-value</option>
34 <option value="signal.value">Significant Value</option> 34 <option value="signal.value">Significant Value</option>
35 </param> 35 </param>
36 <param name="gtable" type="select" label="Genome Table" value="$SCRIPT_PATH/genome_tables/genome_table.worm.ws220.txt"> 36 <param name="gtable" type="select" label="Genome Table" value="\$SCRIPT_PATH/genome_tables/genome_table.worm.ws220.txt">
37 <option value="$SCRIPT_PATH/genome_tables/genome_table.human.hg19.txt">human hg19</option> 37 <option value="\$SCRIPT_PATH/genome_tables/genome_table.human.hg19.txt">human hg19</option>
38 <option value="$SCRIPT_PATH/genome_tables/genome_table.mm9.txt">mouse mm9</option> 38 <option value="\$SCRIPT_PATH/genome_tables/genome_table.mm9.txt">mouse mm9</option>
39 <option value="$SCRIPT_PATH/genome_tables/genome_table.worm.ws220.txt">worm ws220</option> 39 <option value="\$SCRIPT_PATH/genome_tables/genome_table.worm.ws220.txt">worm ws220</option>
40 <option value="$SCRIPT_PATH/genome_tables/genome_table.dmel.r5.32.txt">dmel r5.32</option> 40 <option value="\$SCRIPT_PATH/genome_tables/genome_table.dmel.r5.32.txt">dmel r5.32</option>
41 </param> 41 </param>
42 </inputs> 42 </inputs>
43 <outputs> 43 <outputs>
44 <data format="txt" name="rout" label="IDR.Rout.txt"/> 44 <data format="txt" name="rout" label="IDR.Rout.txt"/>
45 <data format="txt" name="aboveIDR" label="IDR.npeaks-aboveIDR.txt"/> 45 <data format="txt" name="aboveIDR" label="IDR.npeaks-aboveIDR.txt"/>