# HG changeset patch
# User modencode-dcc
# Date 1358792927 18000
# Node ID 38367e8ee3b0e1ad236a088e78c9893c50bfab8f
# Parent  81c3a89e2a5308ffa0339b0348d083430e6e7a87
Uploaded

diff -r 81c3a89e2a53 -r 38367e8ee3b0 bamedit.py
--- a/bamedit.py	Mon Jan 21 13:24:33 2013 -0500
+++ b/bamedit.py	Mon Jan 21 13:28:47 2013 -0500
@@ -21,7 +21,7 @@
 	if('input3' in options):
 		cmdline = "samtools merge  %s %s %s %s" % ( options['bamout'], options['input1'], options['input2'], options['input3'] )
     elif (options['action'] == "split"):
-	cmdline = "bash %s/split.sh %s %s %s" % ( script__path, options['bamout'], options['bamout2'], options['input1'] )
+	cmdline = "bash %s/split.sh %s %s %s" % ( script_path, options['bamout'], options['bamout2'], options['input1'] )
     elif (options['action'] == "pileup"):
 	cmdline = "perl %s/pileup.pl %s %s %s %s %s" % ( script_path, options['input1'], options['input2'], options['bamout'], options['bamname'], options['refname'] )
     elif (options['action'] == "filter"):