view Visualize_Distrubution_of_polymorphism.loc @ 1:c325163e6eb9 draft

planemo upload

#This is a sample file distributed with Galaxy that enables tools
#to use a directory of BWA indexed sequences data files.  You will need
#to create these data files and then create a bwa_index.loc file 
#similar to this one (store it in this directory) that points to 
#the directories in which those files are stored. The bwa_index.loc 
#file has this format (white space characters are TAB characters):
#
#<build>	<file_base>
#
#So, for example, if you had phiX indexed stored in 
#/depot/data2/galaxy/phiX/base/, 
#then the bwa_index.loc entry would look like this:
#
#phiX	/depot/data2/galaxy/phiX/base/phiX.fa
#
#and your /depot/data2/galaxy/phiX/base/ directory
#would contain phiX.fa.* files:
#
#-rw-r--r--  1 james    universe 830134 2005-09-13 10:12 phiX.fa.amb
#-rw-r--r--  1 james    universe 527388 2005-09-13 10:12 phiX.fa.ann
#-rw-r--r--  1 james    universe 269808 2005-09-13 10:12 phiX.fa.bwt
#...etc...
#
#Your bwa_index.loc file should include an entry per line for each
#index set you have stored.  The "file" in the path does not actually
#exist, but it is the prefix for the actual index files.  For example:
#
#phiX	/depot/data2/galaxy/phiX/base/phiX.fa
#hg18	/depot/data2/galaxy/hg18/base/hg18.fa
Oryza sativa(IRGSPbuild5)	/disk/reference/ddbj/distribution_of_polymorphism/o_sativa.build5.fa
Oryza sativa(IRGSPbuild1.0)	/disk/reference/ddbj/distribution_of_polymorphism/o_sativa.build1.0.fa
Arabidopsis thaliana(TAIR10)	/disk/reference/ddbj/distribution_of_polymorphism/TAIR10.fa
Zea mays B73(RefGen_v2)	/disk/reference/ddbj/distribution_of_polymorphism/ZmB73.RefGen2.fa
Sorghum bicolor(phytozome_v9.0_Sbicolor_v1.4)	/disk/reference/ddbj/distribution_of_polymorphism/Sorbi.Sbi1.4.fa
Sorghum bicolor(phytozome_v9.0_Sbicolor_v2.1)	/disk/reference/ddbj/distribution_of_polymorphism/Sorbi.Sbi12.1.fa