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comparison lib.r @ 10:2964f7864315 draft default tip

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planemo upload commit 00684d80f032fee5bd1cb86e05a477fcdcb1c3fc
author lecorguille
date Fri, 07 Apr 2017 08:49:46 -0400
parents fe21deb6b625
children
comparison
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9:fe21deb6b625 10:2964f7864315
120 y = 1:nrow(wl$wm) 120 y = 1:nrow(wl$wm)
121 conn = gibbs.samp(x, y, 5000, w, wl$wm) 121 conn = gibbs.samp(x, y, 5000, w, wl$wm)
122 ansConn = export.class.table(conn, reactionM, ionAnnot, DB=DB,html=listArguments[["html"]],filename="AnalysisExample",prob=listArguments[["prob"]]) 122 ansConn = export.class.table(conn, reactionM, ionAnnot, DB=DB,html=listArguments[["html"]],filename="AnalysisExample",prob=listArguments[["prob"]])
123 if(listArguments[["html"]]){ 123 if(listArguments[["html"]]){
124 #Zip the EICS plot 124 #Zip the EICS plot
125 system(paste('zip -r "Analysis_Report.zip" "AnalysisExample_fig"')) 125 system(paste('zip -rq "Analysis_Report.zip" "AnalysisExample_fig"'))
126 } 126 }
127 127
128 # calculate the correlations and partial correlations and cross reference then with reactions 128 # calculate the correlations and partial correlations and cross reference then with reactions
129 mw=which(w==1,arr.ind=TRUE) 129 mw=which(w==1,arr.ind=TRUE)
130 #reac2cor function : Use the intensity of putative molecules in repeated samples to calculate correlations and partial 130 #reac2cor function : Use the intensity of putative molecules in repeated samples to calculate correlations and partial