Mercurial > repos > mmonsoor > camera_combinexsannos
annotate planemo_test.sh @ 6:558f89a7c5dd draft
planemo upload commit 62670148178273a855c42e85438ce731548ada48-dirty
| author | lecorguille |
|---|---|
| date | Mon, 04 Jul 2016 08:50:29 -0400 |
| parents | d245f818f20a |
| children |
| rev | line source |
|---|---|
|
5
d245f818f20a
planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents:
diff
changeset
|
1 # Example of planemo command to launch test |
|
d245f818f20a
planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents:
diff
changeset
|
2 |
|
d245f818f20a
planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents:
diff
changeset
|
3 # Note: --galaxy_branch "dev" is set to deal with zip file |
|
d245f818f20a
planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents:
diff
changeset
|
4 |
|
d245f818f20a
planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents:
diff
changeset
|
5 |
|
d245f818f20a
planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents:
diff
changeset
|
6 # -- Use of conda dependencies |
|
d245f818f20a
planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents:
diff
changeset
|
7 planemo conda_init --conda_prefix /tmp/mc |
|
d245f818f20a
planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents:
diff
changeset
|
8 planemo conda_install --conda_prefix /tmp/mc . |
|
d245f818f20a
planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents:
diff
changeset
|
9 planemo test --install_galaxy --conda_prefix /tmp/mc --conda_dependency_resolution --galaxy_branch "dev" |
|
d245f818f20a
planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents:
diff
changeset
|
10 |
|
d245f818f20a
planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents:
diff
changeset
|
11 #All 1 test(s) executed passed. |
|
d245f818f20a
planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents:
diff
changeset
|
12 #abims_CAMERA_combinexsAnnos[0]: passed |
|
d245f818f20a
planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents:
diff
changeset
|
13 |
|
d245f818f20a
planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents:
diff
changeset
|
14 |
|
d245f818f20a
planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents:
diff
changeset
|
15 # -- Use of shed_test |
|
d245f818f20a
planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents:
diff
changeset
|
16 planemo shed_test --install_galaxy -t testtoolshed |
|
d245f818f20a
planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents:
diff
changeset
|
17 |
|
d245f818f20a
planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents:
diff
changeset
|
18 #All 1 test(s) executed passed. |
|
d245f818f20a
planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b
lecorguille
parents:
diff
changeset
|
19 #testtoolshed.g2.bx.psu.edu/repos/mmonsoor/camera_combinexsannos/abims_CAMERA_combinexsAnnos/2.0.4[0]: passed |
