Mercurial > repos > mkim8 > mintest3

diff tool_dependencies.xml @ 0:b73bf7e5bb41 draft default tip

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author mkim8
date Fri, 14 Mar 2014 14:31:15 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri Mar 14 14:31:15 2014 -0400
@@ -0,0 +1,21 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="R_3_0_1" version="3.0.1">
+    	<repository changeset_revision="7302d8de5972" name="package_r_3_0_1" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="decoRNA" version="1.0">
+        <install version="1.0">
+            <actions>
+                <action type="setup_r_environment">
+		<repository changeset_revision="7302d8de5972" name="package_r_3_0_1" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"><package name="R" version="3.0.1" /></repository>
+                    <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/BiocGenerics_0.8.0.tar.gz</package>
+                    <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/Biobase_2.22.0.tar.gz</package>
+                    <package>http://bioinformatics.mdanderson.org/OOMPA/2.15/src/contrib/oompaBase_3.0.1.tar.gz</package>
+                    <package>http://bioinformatics.mdanderson.org/OOMPA/2.15/src/contrib/ClassComparison_3.0.0.tar.gz</package>
+                    <package>http://cran.r-project.org/src/contrib/glmnet_1.9-5.tar.gz</package>
+                </action>
+            </actions>
+        </install>
+        <readme>You need a FORTRAN compiler or perhaps f2c in addition to a C compiler to build R.</readme>
+    </package>
+</tool_dependency>