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diff offtarget_wrapper.sh @ 0:b73bf7e5bb41 draft default tip

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author mkim8
date Fri, 14 Mar 2014 14:31:15 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/offtarget_wrapper.sh	Fri Mar 14 14:31:15 2014 -0400
@@ -0,0 +1,11 @@
+R --vanilla --slave --args $1 $2 $3 $4 $5 $6 $7 < /home/galaxy/galaxy-dist/tools/offtarget/offtarget_v7.R > dump
+
+if [ -f ${__tool_data_path__}CorrectedZScore.csv ]
+ then
+   mv dump log.txt
+   zip temp ${__tool_data_path__}*.*
+   mv ${__tool_data_path__}temp.zip $8 
+ else 
+   cat dump >&2
+fi
+