Mercurial > repos > mkim8 > mintest

diff offtarget/offtarget_wrapper.sh @ 0:94332d4947cb draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author mkim8
date Thu, 13 Mar 2014 19:43:26 -0400
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/offtarget/offtarget_wrapper.sh	Thu Mar 13 19:43:26 2014 -0400
@@ -0,0 +1,11 @@
+R --vanilla --slave --args $1 $2 $3 $4 $5 $6 $7 < /home/galaxy/galaxy-dist/tools/offtarget/offtarget_v7.R > dump
+
+if [ -f ${__tool_data_path__}CorrectedZScore.csv ]
+ then
+   mv dump log.txt
+   zip temp ${__tool_data_path__}*.*
+   mv ${__tool_data_path__}temp.zip $8 
+ else 
+   cat dump >&2
+fi
+