view es_gene_search.Rmd @ 11:e5d245413f1b draft default tip

update

---
title: 'Tripal Database: gene search'
output:
    html_document:
      theme: cosmo
      highlight: tango
---

```{r setup, include=FALSE, warning=FALSE, message=FALSE}
knitr::opts_chunk$set(
  echo = FALSE,
  error = TRUE
)
```


# Search information

```{r, results='asis'}
cat('\n')
cat('* **Database URL**:', opt$X_U, '\n')
cat('* **Organism**:', opt$X_O, '\n')
cat('* **Keywords**:', opt$X_K, '\n')
```


```{r}
download_url = paste0(opt$X_U, '/elasticsearch/gene_download?',
             'organism=', URLencode(opt$X_O), '&',
             'search_term=', URLencode(opt$X_K))
download.file(download_url, destfile = opt$X_R)
```