diff search_contents_render.R @ 6:4bc7752bfd72 draft

resources summary + search

--- a/search_contents_render.R	Mon Mar 19 00:43:50 2018 -0400
+++ b/search_contents_render.R	Mon Mar 19 16:29:51 2018 -0400
@@ -10,6 +10,7 @@
 
 library(getopt)
 library(rmarkdown)
+library(jsonlite)
 #------------------------------------------------
 
 
@@ -17,13 +18,13 @@
 # load helper function
 source(paste0(Sys.getenv('TOOL_DIR'), '/helper.R'))
 # import getopt specification matrix from a csv file
-spec_csv = paste0(Sys.getenv('TOOL_DIR'), '/getopt_specification.csv')
-opt = getopt(getopt_specification_matrix(spec_csv))
+opt = getopt(getopt_specification_matrix('/search_contents.csv'))
 opt$X_t = Sys.getenv('TOOL_DIR')
+print(opt)
 #----------------------------------------------------
 
 
-#-----------using passed arguments in R 
+#-----------using passed arguments in R
 #           to define system environment variables---
 do.call(Sys.setenv, opt[-1])
 #----------------------------------------------------
@@ -34,7 +35,7 @@
 OUTPUT_DIR = opt$X_d
 TOOL_DIR =   opt$X_t
 OUTPUT_REPORT = opt$X_o
-RMD_NAME = ''
+RMD_NAME = 'search_contents.Rmd'
 
 # create the output associated directory to store all outputs
 dir.create(OUTPUT_DIR, recursive = TRUE)
@@ -48,4 +49,4 @@
 
 ##--------end of code rendering .Rmd templates----------------
 sink()
-##=========== End of sinking output=============================
\ No newline at end of file
+##=========== End of sinking output=============================