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6
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1 export TOOL_DIR='${__tool_directory__}' &&
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2
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3 Rscript '${__tool_directory__}/'search_contents_render.R
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4
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5 -o '$report'
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6 -d '$report.files_path'
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7 -u '$content_type_url'
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8
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9 #set $sep = ''
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10 #set $search_paths = ''
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11 #for $search_path in $search_section.search_field_repeat:
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12 #set $search_paths += $sep + str($search_path.field_path) + ';' + str($search_path.search_operator)
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13 #set $sep = '|'
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14 #end for
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15 -s '$search_paths'
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16
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17 #set $sep = ''
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18 #set $extract_paths = ''
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19 #for $extract_path in $extract_section.extract_field_repeat:
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20 #set $extract_paths += $sep + str($extract_path.field_path)
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21 #set $sep = '|'
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22 #end for
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23 -e '$extract_paths'
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24
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25 -l '$records_number'
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26 -r '$search_results'
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