# HG changeset patch
# User mingchen0919
# Date 1514341413 18000
# Node ID 74d362c8c0c3228708bba123e25ae0c0881a0df7
# Parent  571cc9a41c129ce2f0d0b9e5685544f1b8fa2e3a
test commit message

diff -r 571cc9a41c12 -r 74d362c8c0c3 tool1.xml
--- a/tool1.xml	Sun Dec 17 01:35:50 2017 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,40 +0,0 @@
-<tool id="tool_template" name="tool name" version="1.0.0">
-  <requirements>
-    <requirement type="package" version="1.15.0.6-0">pandoc</requirement>
-    <requirement type="package" version="1.20.0">r-getopt</requirement>
-    <requirement type="package" version="1.3">r-rmarkdown</requirement>
-    <requirement type="package" version="0.3.5">r-htmltools</requirement>
-    <requirement type="package" version="0.5.0">r-dplyr</requirement>
-  </requirements>
-  <description>some descriptions about the tool.</description>
-  <stdio>
-    <regex source="stderr" match="XXX" level="warning" description="Check the warnings_and_errors.txt file for more details."/>
-  </stdio>
-  <command><![CDATA[
-                    Rscript '${__tool_directory__}/tool_template_render.R'
-                        -e $echo
-                        -r $report
-                        -d $report.files_path
-                        -s $sink_message
-                        -t '${__tool_directory__}/tool_template.Rmd
-                    ]]></command>
-  <inputs>
-    <param type="integer" name="echo" label="Display analysis code in report?" optional="False" checked="False" truevalue="TRUE" falsevalue="FALSE"/>
-  </inputs>
-  <outputs>
-    <data name="report" format="html" label="tool name report" hidden="false"/>
-    <data name="sink_message" format="txt" label="Warnings and Errors" from_work_dir="warnings_and_errors.txt" hidden="false"/>
-  </outputs>
-  <help><![CDATA[some help text]]></help>
-  <citations>
-    <citation><![CDATA[
-                    @article{allaire2016rmarkdown,
-                        title={rmarkdown: Dynamic Documents for R, 2016},
-                        author={Allaire, J and Cheng, Joe and Xie, Yihui and McPherson, Jonathan and Chang, Winston and Allen, Jeff
-                        and Wickham, Hadley and Atkins, Aron and Hyndman, Rob},
-                        journal={R package version 0.9},
-                        volume={6},
-                        year={2016}
-                    ]]></citation>
-  </citations>
-</tool>