Mercurial > repos > mingchen0919 > statonlab_interprocan

comparison interproscan.Rmd @ 5:4aa0cec3399f draft default tip

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add log
author mingchen0919
date Tue, 03 Apr 2018 16:44:50 -0400
parents 10acf59ba351
children
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4:10acf59ba351 5:4aa0cec3399f
26 --disable-precalc ${X_C} \\ 26 --disable-precalc ${X_C} \\
27 --iprlookup ${X_D} \\ 27 --iprlookup ${X_D} \\
28 --goterms ${X_E} \\ 28 --goterms ${X_E} \\
29 --pathways ${X_F} \\ 29 --pathways ${X_F} \\
30 --tempdir ${X_d}/temp_dir \\ 30 --tempdir ${X_d}/temp_dir \\
31 --output-dir ${X_d}/output_dir > interproscan.log.txt 2>&1 31 --output-dir ${X_d}/output_dir > ${X_d}/interproscan.log.txt 2>&1
32 32
33 EOL 33 EOL
34 34
35 # remove empty input lines 35 # remove empty input lines
36 grep -v 'None' temp.sh |\ 36 grep -v 'None' temp.sh |\