Mercurial > repos > mingchen0919 > statonlab_fasta_splitter

annotate split_fasta.sh @ 2:38435c74e795 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
working version
author mingchen0919
date Mon, 09 Apr 2018 14:20:42 -0400
parents 3918528c19b4
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
3918528c19b4 planemo upload
mingchen0919
parents:
diff changeset
1 export TOOL_DIR='${__tool_directory__}' &&
3918528c19b4 planemo upload
mingchen0919
parents:
diff changeset
2
3918528c19b4 planemo upload
mingchen0919
parents:
diff changeset
3 Rscript '${__tool_directory__}/'split_fasta_render.R
3918528c19b4 planemo upload
mingchen0919
parents:
diff changeset
4
3918528c19b4 planemo upload
mingchen0919
parents:
diff changeset
5 -o '$report'
3918528c19b4 planemo upload
mingchen0919
parents:
diff changeset
6 -d '$report.files_path'
3918528c19b4 planemo upload
mingchen0919
parents:
diff changeset
7 -s '$sink_message'
3918528c19b4 planemo upload
mingchen0919
parents:
diff changeset
8 -A '$fasta_input'
3918528c19b4 planemo upload
mingchen0919
parents:
diff changeset
9 -B '$number'