# HG changeset patch
# User mingchen0919
# Date 1514600665 18000
# Node ID 83d7158672a7012424d121cb74ba17315462b538
# Parent  f15179ab782b2a2d656c222edf95f1dd9e2bb201
update

diff -r f15179ab782b -r 83d7158672a7 rmarkdown_samtools_flagstat.xml
--- a/rmarkdown_samtools_flagstat.xml	Wed Dec 27 23:31:01 2017 -0500
+++ b/rmarkdown_samtools_flagstat.xml	Fri Dec 29 21:24:25 2017 -0500
@@ -13,8 +13,8 @@
   </stdio>
   <command><![CDATA[                    Rscript '${__tool_directory__}/rmarkdown_samtools_flagstat_render.R'
                         -e $echo
-                        -b $input_bam
-                        -n $input_bam.name
+                        -b '$input_bam'
+                        -n '$input_bam.name'
                         -r $report
                         -d $report.files_path
                         -s $sink_message