Mercurial > repos > mingchen0919 > rmarkdown_samtools_flagstat

diff rmarkdown_samtools_flagstat.xml @ 5:1c16536c70f5 draft

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update
author mingchen0919
date Wed, 27 Dec 2017 15:20:55 -0500
parents ec39bfeaf496
children f15179ab782b
line wrap: on
line diff
--- a/rmarkdown_samtools_flagstat.xml	Wed Dec 27 15:14:47 2017 -0500
+++ b/rmarkdown_samtools_flagstat.xml	Wed Dec 27 15:20:55 2017 -0500
@@ -14,6 +14,7 @@
   <command><![CDATA[                    Rscript '${__tool_directory__}/rmarkdown_samtools_flagstat_render.R'
                         -e $echo
                         -b $input_bam
+                        -n $input_bam.name
                         -r $report
                         -d $report.files_path
                         -s $sink_message